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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S338.g07485.01.t

Possible name(s)

AP002373.1; RBM11; RBM7

Gene model

Phmamm.CG.MTP2014.S338.g07485

Location

S338 [96,024 / 96,684]

Sequences

Amino acid sequence

Length: 219

>Phmamm.CG.MTP2014.S338.g07485.01.p
MSDTNCTLFVGNLSDKVTEEILFELFLQAGPVKTVCIPKDNKTGRQRNFGFITFKHEVSV
KYSIELLNGIKLFNLPLNVNVRRNRNGAESPQPSNDERMQTPRDLRSQVMNGQMFHAQMM
HQEMPQGSAVYYQQQVVMNSPWSVPQYVHEEQFRVRPNQTPRQHSYHDRRHGREAEDDRY
GNGGDHDRRKKSRHGMNRSQSGPSSNRDRDYRKQPYRRR

Nucleotide sequence

Length: 660

>Phmamm.CG.MTP2014.S338.g07485.01.t
ATGTCAGATACAAACTGTACACTTTTTGTTGGCAATCTAAGTGACAAGGTCACAGAAGAA
ATCTTGTTCGAACTTTTTCTTCAAGCTGGTCCGGTGAAAACTGTTTGCATACCGAAGGAC
AACAAAACAGGCAGACAACGCAACTTTGGGTTCATCACTTTCAAACATGAAGTGTCTGTT
AAATATTCCATTGAACTATTAAATGGAATCAAACTTTTTAATCTGCCTCTGAATGTTAAT
GTAAGACGAAATCGCAACGGTGCAGAGAGTCCACAACCATCAAACGACGAAAGAATGCAG
ACACCACGAGATTTACGCTCTCAAGTCATGAATGGGCAAATGTTCCATGCCCAAATGATG
CACCAAGAGATGCCACAAGGTTCTGCTGTTTACTACCAGCAACAAGTTGTAATGAATTCA
CCATGGTCAGTACCTCAGTATGTCCATGAGGAACAATTCAGAGTCCGACCAAACCAGACT
CCACGGCAGCATTCTTACCATGACAGACGACATGGCCGTGAAGCTGAGGATGATCGCTAT
GGTAACGGTGGTGACCATGACAGGCGGAAAAAGAGCAGACATGGCATGAACCGAAGCCAG
TCTGGGCCGTCATCAAATCGTGACAGAGACTATAGAAAACAGCCATACAGAAGAAGATAA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-101] 7.0E-23
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[3-93] 3.63E-25
ProSiteProfiles
RRM_dom (IPR000504) - T[6-84] 16.142
SMART
RRM_dom (IPR000504) - T[7-80] 5.9E-22
Pfam
RRM_dom (IPR000504) - T[8-75] 6.9E-16

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SF3B4_HUMAN 43.902 % 81.3 5.19E-18
RBM7_HUMAN 56.322 % 103 6.56E-27
RBM11_HUMAN 52.941 % 95.1 1.28E-23