- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S339.g07497.01.t
Possible name(s)
CIAO1; ELP2; PAFAH1B1
Gene model
Location
S339 [26,066 / 28,226]
Amino acid sequence
Length: 719
>Phmamm.CG.MTP2014.S339.g07497.01.p
MDLCLVPPPQGSDMTLSKAVTFQGHGSAVTCLDGTIFESGILVASAGADSTMKLWTGTMN
MESLDCLQTFEFGYGFVLGVCLHVTPSSNIPILACACDDFSVKLYTPSSCVQDEPNKLWT
NVLSLKGHEDWVRGVDFTTVGNELFLASCSQDSFIRLWKIYETHTKETIAEDETFDLRLK
QHNFTTIDNVGNEIKYTVMIDAVLSGHENWVNSAQWSSSNAETVKDLLLVSSSMDKTVVI
WKFDEEQKLWVDGERMGEVGGNTLGFYGALFSKDAKYIISHSFNGALHAWRKNKESEWQP
AITVSGHSSSVSDIDWEPKCGRFLLSTSEDQTTRLFAEWQSVEGTKTWHEIARPQIHGYD
LNCIHMLSSVRFVSGADEKVLRVFDASQNFVTNLLNLTSHKIIDNIAEAAVGASVPALGL
SNKAVYTNEPAPESGKKHASEQYIENLFIPVDLKQPPPETHLSQNSLWPECRKLYGHVYG
LFCVTCNHAGTLIASAAKSSQPKYSEIILWEAGSWNQVASLPGHALTVTQMEFSPNDKYL
LSVSRDRTWVLHYVEKTENGIVTNIAAASDKKLGHARIIWSCSWSVDSKFFATASRDKKV
MVWELSDEDSSHKVVVTRKSVNNCQQPVTAVAYALKSFETKSHILAVGLESGQIKIVSIC
EANNYSFVDMLCFDVNMSHCLPLKRLKWRPSDKPSESDDTLFLASCSQDHQIKLFKLYF
Nucleotide sequence
Length: 2,160
>Phmamm.CG.MTP2014.S339.g07497.01.t
ATGGATTTGTGCTTGGTACCCCCCCCCCAAGGCAGTGATATGACATTGTCCAAAGCAGTG
ACCTTTCAAGGTCATGGAAGTGCTGTGACGTGTTTGGATGGAACGATTTTTGAATCTGGA
ATATTAGTTGCTTCTGCTGGGGCAGATTCAACAATGAAATTATGGACGGGAACAATGAAT
ATGGAATCGTTAGATTGTTTGCAAACTTTTGAGTTTGGATATGGATTTGTGCTTGGTGTT
TGTTTGCATGTTACACCTTCAAGTAATATTCCAATACTTGCTTGTGCATGTGATGACTTC
TCTGTTAAACTCTATACTCCCTCTAGTTGTGTTCAAGATGAGCCCAATAAACTGTGGACC
AACGTGCTAAGCTTAAAGGGACATGAAGATTGGGTTCGAGGTGTCGACTTTACAACAGTT
GGTAATGAACTGTTTCTGGCAAGTTGCTCACAAGATTCATTCATAAGATTGTGGAAAATT
TATGAAACACACACTAAGGAGACTATAGCAGAGGATGAAACGTTTGACCTAAGGCTGAAA
CAACACAACTTTACTACAATTGACAATGTTGGAAATGAAATAAAATACACAGTGATGATT
GATGCTGTACTTTCAGGGCATGAAAACTGGGTTAACAGCGCCCAATGGAGTTCATCTAAT
GCTGAAACTGTGAAGGATTTATTACTGGTTTCTTCATCAATGGATAAGACTGTGGTAATT
TGGAAGTTTGATGAGGAACAAAAGCTGTGGGTTGACGGAGAGAGAATGGGTGAAGTTGGG
GGAAACACCCTGGGGTTTTATGGGGCTTTGTTCAGCAAAGATGCCAAATACATTATTTCA
CACAGCTTCAATGGAGCTCTTCATGCTTGGAGGAAAAACAAAGAGTCTGAATGGCAACCT
GCAATTACTGTAAGTGGACATTCGTCCAGTGTCAGTGACATTGATTGGGAGCCAAAGTGT
GGAAGATTTTTACTGAGCACAAGCGAAGATCAGACAACAAGATTATTTGCAGAATGGCAA
AGTGTAGAAGGGACAAAAACGTGGCATGAAATAGCCAGGCCTCAAATTCATGGGTATGAC
CTAAACTGCATTCACATGCTCAGCAGTGTAAGGTTCGTGTCTGGAGCAGATGAGAAAGTG
TTACGAGTGTTCGATGCATCGCAGAACTTTGTAACAAACCTTCTTAACTTAACTTCACAC
AAAATTATTGATAATATTGCTGAAGCAGCAGTAGGGGCATCTGTACCAGCACTGGGTCTT
TCCAACAAAGCCGTCTACACAAACGAACCAGCACCAGAAAGTGGCAAAAAACATGCAAGT
GAACAATACATTGAAAACCTGTTTATCCCTGTTGATTTAAAACAGCCACCTCCTGAAACA
CATCTGTCACAAAACAGTCTGTGGCCTGAGTGCAGAAAGTTGTATGGACATGTATATGGG
TTGTTTTGTGTCACATGTAATCATGCTGGGACACTGATTGCCTCTGCTGCTAAGTCCTCA
CAGCCAAAGTACTCTGAGATTATTCTGTGGGAGGCTGGGAGTTGGAATCAGGTAGCATCT
CTACCAGGGCACGCATTGACTGTCACACAAATGGAGTTTTCACCAAACGACAAATATTTA
CTTTCAGTGTCGCGCGACAGAACGTGGGTTTTGCATTATGTTGAGAAAACTGAAAATGGA
ATTGTTACTAATATTGCTGCTGCGAGTGACAAGAAACTTGGCCATGCAAGGATAATTTGG
TCTTGTTCATGGTCTGTGGATTCCAAGTTTTTTGCCACTGCATCGAGGGACAAAAAGGTG
ATGGTTTGGGAACTGTCAGATGAAGACTCGTCACATAAAGTTGTTGTGACACGCAAGTCG
GTGAACAACTGCCAGCAACCTGTGACTGCTGTCGCTTATGCGTTAAAATCATTTGAAACA
AAGTCCCACATCCTGGCGGTTGGTCTCGAGAGCGGACAGATTAAAATTGTCTCAATTTGT
GAGGCCAATAATTATTCTTTTGTTGACATGCTTTGTTTTGATGTGAACATGTCACATTGT
TTACCACTGAAAAGGTTAAAATGGCGACCATCTGATAAACCTAGTGAAAGCGATGACACA
CTTTTCTTGGCATCCTGCAGCCAGGATCATCAAATTAAACTGTTCAAACTTTACTTTTGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[6-189] 1.4E-22 - T[190-300] 5.2E-15 - T[301-415] 1.6E-10 - T[459-562] 6.9E-13 - T[563-718] 2.4E-15 |
| SMART |
WD40_repeat (IPR001680) - T[15-56] 0.093 - T[63-106] 12.0 - T[118-159] 6.3E-6 - T[197-242] 2.0E-5 - T[252-291] 180.0 - T[297-337] 0.0039 - T[347-385] 26.0 - T[467-511] 3.8 - T[514-553] 1.5E-4 - T[566-604] 7.5E-4 - T[669-716] 0.86 |
| PANTHER |
Elp2 (IPR037289) - T[17-718] 1.5E-250 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[19-290] 3.2E-26 - T[574-716] 6.23E-13 |
| Pfam |
WD40_repeat (IPR001680) - T[21-55] 0.001 - T[120-159] 0.0016 - T[203-242] 7.7E-4 - T[515-548] 0.023 - T[574-603] 1.1E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[22-55] 8.67 - T[125-168] 10.341 - T[204-251] 10.308 - T[304-336] 9.64 - T[572-613] 11.712 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[125-168] 10.021 - T[204-336] 15.083 - T[507-613] 13.791 |
| SUPERFAMILY |
Quinoprotein_ADH-like_supfam (IPR011047) - T[202-613] 2.0E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ELP2_HUMAN | 42.685 % | 567 | 0 |