- Clone 'cien30017' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S33.g01276.01.t
Possible name(s)
PCDH11X; PCDH11Y; PCDH9
Gene model
Location
S33 [13,090 / 16,969]
Amino acid sequence
Length: 983
>Phmamm.CG.MTP2014.S33.g01276.01.p
EVFSFIYSMELIYLVLACLCALDYCQAQDHIYRTNEETGKGHYVGNVPQDIGLAPLPPNG
QKRSYRIMNGGDKISVDAVSGDLKTAMQLDREVLCPDNPDRCEINVEVLVVPPFRLLNLL
FIVNDLNDNAPKFPTEIIKKDISESAIVGSAIRLDSAIDPDLKLNSIQNYKISSSPPSRK
DKNGVSVPYFRLDIIQNIDGTKIPQLNLTQSLDREQVDSYELLLYAIDGGSTALTGTATV
QISVTDSNDNQPEFPQDSYVREIPESMQPGSLVIQVTASDLDAGSNADIEYTFPTVVNDH
DRSLFDLDSETGAITIKEPGLDFENKNIHHLTVEARDRGPNPASAYTTVTVKVLDVNDEA
PHIDVSFMDFVEKKIDDTGSVAPNSVLIKEDIANETYIAFVTVTDRDTGKNGRVVCHIKQ
PSSFELKDLDQDQNRYLIRTKNLLDRETERYHKIEIVATDEGSPSLSNTTTVLVELLDIN
DNAPKFGKPEYIVDVSENVDHGERVTEILAQDPDAGANAQITYSIRPTYENTVTPFTIDA
DTGIVRFANDATKLDAENATEPFALTVTATDNGDPRLSSTTLLTIKVMDENDNVPVFRKK
IYDFRIREDSKRGTYVGQVIADDADVDKTTNARITYSFAHDSNEPNPFTLKEETGEIHFD
GEQSQIDREARDSRPYILTVEAWDNGKDPTSDRATVEIYLEDVNDNSPSIVFPNVTRDIA
IVYIVPQQEMDETLSEAVDGTDAPSDEEAMDYLLESSELSVAQQVIRIGTSESPMQSHPP
LQVPVLVTQIRAVDRDASENGHVRYSLVDGNVNDYFSVDMSSGNITLNLKNEDALRAMKR
GCHVIKISVSDLGKPVPMTTPAWVNIYITDSTPGTVNISDAMKDCQNNSFFPVIFAPDDD
EIGAASSSNLLFILIVTFVAVFAIILIITIALLIKYKCRCAKDKKSRTYNCQQAADVYSE
HSYAQGSPIVKKGRGKGSPFGDR
Nucleotide sequence
Length: 2,951
>Phmamm.CG.MTP2014.S33.g01276.01.t
GGAGGTTTTCAGTTTCATTTACTCCATGGAGCTGATATACTTGGTGTTAGCATGCCTTTG
TGCGTTGGATTACTGTCAAGCACAGGACCATATTTACAGGACAAATGAAGAGACCGGCAA
AGGCCATTATGTGGGAAATGTACCACAGGACATTGGCCTTGCACCCTTGCCGCCGAATGG
CCAGAAACGCTCGTATCGTATCATGAATGGCGGTGACAAAATTAGTGTAGATGCTGTCAG
TGGTGATTTGAAAACAGCCATGCAACTGGATCGCGAAGTTTTGTGCCCCGACAACCCGGA
CCGGTGTGAAATCAACGTCGAAGTGTTAGTTGTGCCACCGTTTCGACTTCTAAATCTGCT
GTTCATTGTGAATGACCTAAACGACAACGCACCCAAATTTCCAACTGAAATCATTAAAAA
GGATATTTCCGAAAGTGCTATCGTCGGTTCAGCGATTCGATTAGACAGCGCCATCGACCC
TGACCTTAAATTAAACTCCATCCAAAACTACAAGATATCTTCATCTCCACCGAGCCGCAA
GGACAAAAATGGTGTCAGCGTCCCATATTTTCGCCTGGACATTATCCAAAATATCGACGG
CACAAAGATACCTCAGCTGAACCTAACTCAGTCTCTTGATAGGGAACAGGTCGACTCGTA
TGAACTTCTGCTTTACGCCATTGATGGGGGTTCCACAGCCTTGACCGGGACAGCTACAGT
ACAAATAAGCGTCACAGACTCAAATGACAACCAACCTGAATTTCCACAGGACAGCTATGT
GCGAGAAATACCTGAGAGTATGCAACCTGGCTCGTTGGTCATCCAGGTCACAGCAAGCGA
TTTAGATGCTGGTTCAAATGCCGATATCGAATACACCTTCCCAACAGTGGTTAATGATCA
TGACCGTTCACTGTTTGACCTTGACTCTGAAACCGGGGCCATCACTATAAAGGAACCAGG
TTTGGACTTTGAAAACAAGAATATACATCACCTGACTGTAGAAGCTAGAGACAGAGGCCC
CAACCCTGCGTCTGCTTACACCACTGTCACCGTTAAAGTACTGGATGTAAATGATGAAGC
TCCTCATATAGATGTAAGCTTTATGGATTTTGTTGAAAAGAAGATAGACGATACAGGCAG
TGTTGCACCAAACAGCGTCCTCATCAAAGAAGATATTGCTAACGAAACTTACATCGCATT
TGTGACCGTCACTGACCGAGATACCGGTAAAAATGGTCGGGTTGTTTGTCACATAAAACA
ACCCTCCAGTTTTGAGCTTAAGGATTTAGATCAGGACCAAAATAGGTATCTGATACGAAC
AAAGAACCTTCTCGACCGAGAAACAGAACGATATCACAAAATAGAGATTGTAGCAACAGA
CGAAGGCTCGCCTTCACTCAGTAACACAACAACGGTTCTTGTGGAGTTACTTGACATCAA
CGATAATGCACCCAAGTTTGGCAAGCCGGAATATATCGTGGATGTTAGTGAGAATGTCGA
CCACGGCGAAAGGGTCACAGAAATATTAGCACAAGACCCAGATGCGGGAGCAAATGCCCA
AATCACGTATTCGATTCGGCCAACATATGAAAACACAGTTACTCCCTTCACTATCGATGC
AGATACCGGGATTGTGCGATTTGCAAACGATGCAACTAAATTGGATGCTGAGAATGCTAC
CGAACCGTTCGCGCTAACTGTGACCGCCACTGATAACGGAGACCCACGGCTGAGCTCAAC
CACATTGCTAACAATCAAAGTCATGGATGAAAACGACAACGTACCCGTGTTCCGGAAGAA
GATATACGACTTTCGGATTCGCGAGGACAGTAAACGCGGGACTTACGTTGGTCAAGTGAT
TGCTGATGACGCTGATGTTGACAAGACAACTAACGCTCGCATCACATACAGCTTTGCACA
CGACTCAAATGAACCTAACCCGTTTACACTGAAGGAGGAAACTGGTGAAATTCATTTCGA
TGGCGAACAAAGTCAAATAGACAGAGAAGCCCGCGATTCCAGACCCTACATCCTCACTGT
TGAGGCCTGGGACAACGGGAAAGACCCGACAAGCGACAGAGCCACTGTTGAAATATATCT
GGAAGATGTTAACGACAACAGCCCATCTATAGTGTTCCCCAACGTAACACGGGATATTGC
GATTGTGTACATCGTGCCGCAACAGGAGATGGACGAAACTCTCTCGGAAGCTGTCGACGG
AACAGACGCACCAAGTGATGAAGAAGCGATGGATTATCTGCTGGAGAGCAGTGAGTTATC
GGTCGCGCAGCAAGTCATCCGCATCGGGACGTCGGAATCCCCGATGCAGAGTCATCCTCC
TCTGCAAGTCCCCGTGCTTGTGACGCAAATACGCGCAGTGGACCGAGACGCAAGTGAAAA
TGGTCACGTGAGGTACTCGTTAGTCGACGGCAACGTAAACGATTACTTTTCGGTGGATAT
GTCGTCGGGAAACATCACTCTGAATCTGAAAAACGAAGATGCTCTGCGCGCAATGAAACG
TGGATGTCACGTGATCAAGATCTCGGTCAGCGATCTCGGCAAACCCGTTCCCATGACAAC
ACCTGCTTGGGTTAACATCTACATAACAGACTCCACCCCTGGCACAGTGAACATTTCCGA
TGCGATGAAAGATTGCCAGAATAACAGCTTCTTCCCTGTGATATTCGCTCCAGACGATGA
TGAAATAGGAGCAGCTTCATCCAGCAATCTGCTTTTCATACTCATTGTAACATTCGTTGC
GGTGTTTGCGATTATTTTGATTATCACGATTGCTTTGTTGATCAAGTACAAGTGCCGTTG
CGCTAAGGACAAGAAATCAAGGACTTATAATTGCCAGCAAGCGGCTGATGTGTACAGCGA
ACACTCTTATGCCCAGGGATCACCAATCGTCAAGAAAGGAAGAGGAAAAGGATCGCCTTT
TGGAGACAGGA
| Pfam |
Cadherin_N (IPR013164) - T[32-110] 5.4E-10 |
| SMART |
Cadherin (IPR002126) - T[54-131] 0.11 - T[155-252] 2.3E-16 - T[276-361] 1.5E-25 - T[401-484] 2.6E-21 - T[508-595] 3.2E-20 - T[619-708] 1.5E-13 - T[790-873] 6.2E-8 |
| PRINTS |
Cadherin (IPR002126) - T[72-91] 1.4E-28 - T[133-162] 1.4E-28 - T[219-231] 1.4E-28 - T[233-252] 1.4E-28 - T[252-265] 1.4E-28 - T[311-337] 1.4E-28 - T[468-485] 1.4E-28 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[127-246] 4.57E-18 - T[242-368] 2.54E-30 - T[385-479] 4.45E-18 - T[479-589] 1.44E-23 - T[585-715] 5.05E-26 - T[783-870] 1.16E-13 |
| Pfam |
Cadherin (IPR002126) - T[142-245] 5.6E-11 - T[259-354] 4.4E-18 - T[386-476] 4.2E-13 - T[492-587] 4.1E-14 - T[602-700] 7.1E-15 - T[784-868] 6.2E-9 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[242-252] . - T[474-484] . - T[585-595] . - T[698-708] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PC11Y_HUMAN | 31.53 % | 397 | 9.31E-120 |
| PCDH9_HUMAN | 36.193 % | 379 | 6.47E-114 |
| PC11X_HUMAN | 31.738 % | 402 | 1.31E-121 |