- Clone 'AJ493958' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S342.g07541.01.t
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
S342 [1,321 / 7,774]
Amino acid sequence
Length: 564
>Phmamm.CG.MTP2014.S342.g07541.01.p
MLGTEYSGFGSAREKLVTISDFTLLIIDECHHTVKDDPYNNIMKIYLDKRLDASSDVSLP
QIVGLTASPGMGKAKKMSQAEENIKTLMANLDVTKAPTQVNLSTRNLKTFQNETRDHLGG
EIKFNLHARKGSQDYEAWVITLRNRSKTLANDDLSHKLMMFAEHLLAYNTALVLNDHVRS
SDAEDQLFELMEKYKSENPVVLRLRQIYDTNKVEPLKQVNDLLLKLHKVLLDEFSRQNDS
RCIIFVRTRSIAGGVITYMEEEQDLMKFGLNPKLLTGAGVSGDKGGMTKREQESTLGAFR
QGKCKVIVATSVAEEGLDIQACNLIITYNYSTNEVGHVQRKGRGRAANSQIVTLAYDDSG
HVQKERENKIRVELTEEMLGTIRGIPPKTLKDQIREIQIKAKKERDLERKIKARLKPRKK
SDEIFNLQCLWCKQHATTTQHLRHINKQHRVIVDPGFVQRAVFKTEKDPQKWKKLADDHF
VTGKMFCANQCCRNHLGYRMKHKHLTLSVPKVTCFLFTDQSGSRETFEKWSQVTFKVNEL
NEQDLAELLPLGNLDNEIEDVDYD
Nucleotide sequence
Length: 1,695
>Phmamm.CG.MTP2014.S342.g07541.01.t
ATGCTCGGTACCGAGTACTCGGGTTTTGGCTCGGCTCGAGAGAAACTTGTGACAATCAGT
GATTTTACGTTGCTGATTATTGATGAGTGCCATCACACAGTGAAAGATGATCCTTACAAC
AATATCATGAAGATATATCTCGACAAACGACTCGATGCAAGCAGTGATGTTTCCCTACCA
CAGATTGTTGGTCTGACAGCTTCACCAGGAATGGGAAAAGCAAAGAAAATGTCTCAAGCT
GAAGAGAACATCAAAACTTTGATGGCAAATTTGGATGTCACCAAAGCCCCAACTCAAGTT
AATTTGTCAACGAGAAATCTCAAAACATTTCAGAACGAAACCAGAGACCACTTGGGGGGT
GAAATTAAATTCAACCTTCACGCTCGAAAAGGCAGCCAAGATTACGAAGCTTGGGTGATC
ACGTTGAGAAATAGGAGCAAGACTTTAGCGAACGATGATTTGAGCCACAAGTTGATGATG
TTTGCGGAACACTTATTGGCATACAACACAGCACTAGTACTGAACGATCATGTCAGAAGC
TCAGATGCTGAAGACCAACTTTTCGAACTGATGGAAAAATATAAATCGGAAAATCCCGTT
GTTCTTCGTTTGAGGCAAATTTATGATACTAACAAGGTTGAACCGTTGAAACAAGTGAAT
GATCTTTTGCTGAAACTGCACAAAGTTTTATTGGATGAATTCAGTCGGCAAAACGATTCC
CGTTGTATTATATTTGTGAGAACGCGCAGCATCGCTGGTGGAGTGATCACTTACATGGAA
GAAGAACAGGATCTGATGAAGTTTGGTTTGAATCCGAAATTGCTCACTGGCGCCGGAGTC
AGCGGAGATAAAGGAGGAATGACGAAACGTGAACAGGAAAGTACGTTGGGGGCATTTCGT
CAGGGAAAGTGTAAAGTTATAGTTGCAACGTCCGTGGCTGAGGAAGGTCTGGATATTCAG
GCATGTAACCTAATCATCACTTATAACTATTCAACCAACGAAGTGGGACATGTACAGCGT
AAAGGTCGCGGCAGAGCAGCTAACAGTCAGATTGTGACGTTGGCTTATGACGACAGTGGT
CACGTGCAAAAAGAGCGGGAAAATAAGATTCGGGTTGAACTCACAGAGGAAATGCTGGGC
ACGATCAGGGGAATCCCCCCGAAAACCTTGAAGGATCAGATCCGCGAGATTCAGATCAAA
GCGAAGAAGGAGCGCGACCTCGAGCGGAAAATCAAAGCTCGTTTGAAACCGAGAAAGAAA
AGCGACGAAATTTTCAACCTCCAGTGTTTGTGGTGTAAACAACATGCCACAACCACTCAA
CACCTGCGCCACATCAACAAACAGCATCGCGTTATTGTGGATCCTGGATTCGTGCAGCGT
GCTGTTTTCAAAACCGAGAAAGATCCCCAAAAGTGGAAGAAACTGGCGGACGATCATTTT
GTGACCGGGAAAATGTTTTGCGCGAATCAGTGCTGCAGAAACCACTTGGGATATCGAATG
AAACATAAACATCTTACACTGTCCGTTCCCAAGGTAACCTGTTTCCTTTTCACCGACCAA
TCAGGAAGCAGGGAGACGTTCGAGAAATGGAGTCAGGTCACTTTCAAGGTCAACGAGTTG
AACGAGCAGGATTTGGCCGAACTTCTGCCGTTGGGAAATCTCGACAATGAGATAGAAGAT
GTTGATTACGACTGA
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[1-87] 10.157 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[16-360] 9.13E-30 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[218-398] 15.692 |
| Pfam |
Helicase_C (IPR001650) - T[230-346] 1.2E-17 |
| CDD |
Helicase_C (IPR001650) - T[236-349] 9.74539E-14 |
| SMART |
Helicase_C (IPR001650) - T[259-347] 5.0E-15 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[415-547] 24.804 |
| Gene3D |
RLR_C_sf (IPR038557) - T[422-551] 7.4E-23 |
| Pfam |
RLR_CTR (IPR021673) - T[426-542] 1.2E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 31.673 % | 218 | 9.96E-63 |
| DDX58_HUMAN | 28.471 % | 215 | 1.4E-60 |
| IFIH1_HUMAN | 29.966 % | 234 | 6.38E-67 |