- Clone 'cijv049l14' >
- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'KH2012:KH.L63.13.v1....' >
- Clone 'AHC0AAA133YB11' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S345.g07593.01.t
Possible name(s)
CCDC88C; HMCN1; SEMA5A
Gene model
Location
S345 [82,727 / 93,566]
Amino acid sequence
Length: 1,409
>Phmamm.CG.MTP2014.S345.g07593.01.p
MNLVEQLGVDRVLGRLRQTKMMSKEVLDDMKEWETDYEKRVALLGFLVSPEGKRAFGALF
ELAKVHEEQVKMQEEQEKLRQEQLAQQPPPTETKRPAPGHSGNSRSNADHRTNASSNMKS
KLRAQMHKKRTVNTAPSQQQDSPNAGNNGKSKKGSKKSEDKDDPLLEEAARTLEEAERLE
KEKKRLAAFRTQLAASEAQDQPGSTSNRNLRQVKFFMPVKNGGSPRRTPTPSTMSETQED
NVSDISKPHKKRDERSPSTEREPTSPSSIKRVRKASESSASPVQKHVNFKIEPEATPKAL
NDFARQKQEAVGAESPTPEDRRHSTKEEINEEPEYHEPDRERLPPEGENLTDLEPKQADN
VFNDDGRTEHVEERSRTNSMSNERCSSSDEMPAADIFATPTKLMNTLAPIVDRDIDLNEV
RGLLLADIVAEWRMLRKEREKFIAGVQGQAKLVKHLKDELRALGDERDKMQKEKDKFVFK
EFELQQKLSDLQQKHRSLREDHDALKQGNHQIQQNSKKANKIHQDMKRKIAKLESKIKLM
DKVTVRRGTQTDDQLDKNVHEALRMAEESLAVNQNELTSAQGKLKNAQQEVDDLKKQVNL
KGREINKRERKSKKDEEQIRMVSRERDAMESKLRKVSEQMEYYKTMMEMKVKGSKRPPQE
KKEVKVQRCASGRHVVIKSVPTGITASSCHTNDNDNQNDGALKSPGRRPSTVKIQQQAKA
KSDADKAPTTPRKSGSQQNSQPQKDTTSDSQKQSTSEGTPRQNTKQLVKAKPSNGNGNSS
GTKSAVSTPRSTVSNSDNTPGTPKGPSDQSTNGDNKVKAPTTPRKGPSTSAEESKTVANS
ETKTVPSIQIVGLVGQLIAVAFNRTDTEETSQRRISGAGSRVLDVDPSQATFIWRKQKIF
APLAGLAAICIIGVGCVLVVFLGVPQSSQEAATGRVRLGRMFMPQFGMEVEEPIDDTPDF
GSMMNDLSGVMSDAFDTISNAMDEQLKVREDEMAAHEETQPQFSGEFVDPVVIQPAEIIL
PKDAAINPPAPTPAPPVPISVKHCTQIERVFTVRIDHPYKSNIYYPGDTWTLPSGMKCRC
ADDGFTECHDPKMCFGHALGEVFCSGLGIEFAQECSFPEATERKLPGAYVGMGKTKTYHV
PECSACVVPGCITWNGRWSTWVAWSQCTAGCGTGLRRRFRHCSQGERCFGEDTEEEECII
KPCTGWTSDGKMYRYRGVAEMITYKAKMDARPPQYYITGKDTARSYYAEVRYYDWKNPGK
KIDHYTGSYVVGHFTQLLWMSTERIGCGVARSDEPIDDGMYVYFSVCHYSSGGNDALVPE
EWEEQVPYFNEELICQAECGPNKCYSFTGVDSNSGSTSSCTCTDAVSPTCSTPCLAFCPG
AEWNKMCYGEHDCHCTSKAAVCDGLPVVE
Nucleotide sequence
Length: 4,230
>Phmamm.CG.MTP2014.S345.g07593.01.t
ATGAACCTGGTGGAGCAGTTGGGAGTGGACCGAGTTCTGGGAAGATTGAGACAAACAAAA
ATGATGAGCAAGGAGGTCTTGGATGACATGAAGGAATGGGAAACGGATTATGAAAAACGG
GTTGCTCTGCTTGGATTTCTTGTTTCTCCTGAAGGGAAGCGCGCATTTGGTGCCTTGTTC
GAACTTGCAAAAGTTCACGAAGAGCAGGTAAAGATGCAGGAAGAGCAAGAAAAGTTACGA
CAGGAACAACTTGCTCAGCAGCCTCCACCAACGGAGACAAAGCGACCAGCACCGGGGCAT
TCGGGTAACAGCAGGTCTAACGCCGACCACCGGACCAATGCCAGTTCCAATATGAAAAGT
AAATTGCGCGCACAAATGCACAAGAAACGTACAGTCAACACCGCACCGAGTCAACAACAG
GATTCTCCAAACGCCGGGAACAATGGGAAGAGCAAGAAGGGATCCAAAAAGTCGGAGGAT
AAAGACGACCCCTTGCTGGAGGAAGCTGCCAGGACGTTGGAGGAGGCGGAGCGGCTCGAG
AAGGAAAAGAAGCGACTGGCAGCGTTCAGAACCCAACTTGCTGCGAGTGAAGCACAAGAC
CAACCTGGAAGCACAAGCAATCGCAATCTCAGGCAAGTAAAATTTTTTATGCCAGTCAAA
AATGGTGGAAGTCCGCGAAGAACTCCGACGCCATCGACAATGTCTGAAACACAAGAAGAC
AATGTTAGCGACATTTCAAAACCACACAAAAAGAGAGACGAAAGATCGCCGAGCACAGAG
CGCGAGCCAACATCACCCAGTTCCATAAAGAGAGTACGAAAGGCAAGTGAAAGTTCAGCG
TCACCCGTTCAGAAGCATGTCAACTTTAAGATCGAGCCAGAGGCAACCCCTAAAGCACTT
AACGACTTTGCCCGACAAAAACAAGAGGCCGTTGGTGCTGAGAGCCCAACCCCCGAAGAC
AGAAGACATTCTACAAAGGAGGAGATAAATGAAGAACCAGAGTACCATGAGCCTGATAGG
GAACGACTGCCTCCGGAGGGCGAAAACTTGACAGATCTAGAGCCAAAACAAGCGGACAAT
GTGTTTAATGATGACGGTCGCACAGAACATGTCGAAGAAAGATCGAGAACGAATTCTATG
TCCAATGAAAGATGCTCCTCCAGCGATGAGATGCCTGCAGCAGACATATTTGCCACCCCG
ACGAAACTGATGAACACCTTAGCACCGATTGTGGACCGGGACATAGATCTGAACGAGGTG
AGGGGTTTGCTACTGGCCGACATTGTTGCTGAATGGAGAATGCTCCGCAAAGAGAGAGAA
AAGTTTATTGCTGGGGTGCAAGGCCAAGCAAAACTCGTTAAACATCTGAAAGACGAACTC
CGCGCTTTGGGAGACGAAAGAGACAAAATGCAGAAAGAAAAAGACAAATTTGTCTTTAAA
GAGTTCGAATTGCAGCAAAAGTTAAGTGATCTTCAGCAGAAACATCGTTCCTTAAGGGAA
GACCACGATGCTCTAAAACAAGGAAATCACCAAATTCAGCAGAATTCTAAGAAAGCCAAC
AAAATACACCAGGATATGAAGAGAAAAATTGCTAAGCTTGAATCGAAAATTAAACTTATG
GACAAAGTTACTGTGAGACGGGGAACGCAGACCGATGATCAGCTTGACAAGAATGTACAT
GAAGCACTTCGCATGGCAGAGGAATCTCTAGCAGTCAATCAAAACGAGCTCACAAGCGCC
CAAGGAAAGTTGAAAAACGCACAGCAAGAGGTCGACGATCTAAAGAAGCAAGTAAACCTC
AAGGGTCGGGAGATCAACAAACGCGAGCGAAAGAGCAAAAAAGATGAAGAGCAAATCCGC
ATGGTGTCGCGCGAGAGAGATGCGATGGAATCCAAACTGCGCAAGGTTTCTGAACAAATG
GAATATTACAAGACCATGATGGAAATGAAGGTAAAAGGTTCAAAACGTCCACCGCAAGAA
AAGAAGGAGGTCAAAGTTCAACGATGCGCCAGTGGTCGTCACGTCGTGATTAAGTCAGTA
CCCACTGGCATCACCGCCTCATCTTGCCACACAAACGATAATGATAACCAAAACGACGGA
GCATTAAAATCACCTGGAAGGCGACCGTCAACAGTTAAGATCCAACAACAAGCAAAAGCC
AAATCGGATGCTGACAAAGCACCAACAACTCCAAGAAAGTCTGGATCACAACAAAATTCA
CAGCCTCAAAAAGATACCACGAGCGACAGTCAGAAACAGTCGACTTCTGAAGGCACTCCA
AGACAAAACACCAAACAACTTGTTAAAGCTAAACCCAGCAACGGTAATGGCAACAGTTCA
GGTACCAAATCAGCAGTAAGCACACCACGATCAACAGTATCCAATAGTGACAATACACCT
GGCACTCCCAAAGGACCATCGGATCAAAGCACTAATGGTGACAACAAAGTAAAAGCCCCA
ACCACGCCACGTAAAGGGCCCAGCACATCAGCTGAAGAATCCAAAACTGTTGCAAATTCA
GAAACAAAAACTGTCCCTTCGATCCAGATTGTCGGCCTTGTAGGACAGCTCATTGCAGTT
GCATTTAACAGGACAGACACGGAAGAAACCTCGCAACGTAGAATTTCAGGAGCAGGCAGT
CGAGTTTTGGACGTTGACCCATCACAAGCCACATTTATATGGAGAAAACAAAAGATATTT
GCGCCCCTTGCGGGTCTTGCAGCAATCTGTATTATAGGCGTTGGCTGTGTTTTGGTTGTG
TTTTTGGGAGTTCCACAATCCTCCCAAGAAGCAGCTACCGGCAGGGTTAGGTTGGGTCGA
ATGTTTATGCCACAGTTTGGAATGGAAGTAGAAGAACCGATAGACGACACCCCCGATTTC
GGTTCCATGATGAACGACCTCTCTGGTGTTATGTCGGACGCTTTTGATACGATTTCAAAT
GCTATGGATGAACAACTGAAAGTTCGCGAAGATGAAATGGCTGCACACGAGGAAACCCAA
CCACAATTTTCAGGCGAATTTGTTGATCCCGTTGTCATACAACCAGCAGAAATCATTTTG
CCGAAAGATGCGGCAATAAATCCTCCAGCTCCAACGCCTGCTCCGCCAGTTCCCATTTCG
GTGAAGCATTGCACACAAATCGAGCGGGTGTTTACTGTACGGATAGACCACCCTTACAAG
TCAAACATCTACTATCCCGGGGACACTTGGACCTTGCCATCGGGAATGAAATGTCGTTGC
GCTGACGACGGATTTACGGAATGCCACGACCCAAAGATGTGTTTTGGACACGCGTTGGGA
GAAGTATTCTGTTCTGGACTCGGGATAGAGTTTGCACAAGAATGTAGTTTTCCTGAGGCG
ACAGAACGAAAACTACCCGGGGCATATGTTGGAATGGGAAAGACAAAGACTTACCACGTG
CCAGAATGTTCAGCTTGTGTGGTACCAGGATGTATAACATGGAATGGTCGATGGTCAACT
TGGGTTGCATGGTCGCAGTGCACGGCTGGATGTGGCACAGGATTGAGACGTAGATTTCGG
CATTGTTCCCAAGGAGAGCGTTGTTTTGGGGAGGATACTGAAGAAGAAGAATGCATCATC
AAACCATGTACAGGCTGGACTTCGGATGGAAAAATGTATAGATATCGGGGAGTTGCCGAA
ATGATAACCTACAAAGCAAAGATGGACGCAAGGCCTCCACAATACTACATCACTGGCAAG
GACACAGCTCGAAGCTACTACGCTGAAGTTCGCTATTACGACTGGAAAAACCCTGGAAAG
AAGATTGACCATTATACGGGAAGTTACGTCGTCGGTCATTTTACTCAACTGCTGTGGATG
TCGACGGAACGCATAGGATGTGGTGTGGCAAGATCAGATGAACCGATAGACGACGGAATG
TACGTTTACTTTTCTGTCTGTCACTACAGTTCCGGGGGAAACGACGCACTTGTGCCAGAA
GAATGGGAGGAGCAAGTGCCCTATTTTAATGAAGAGCTCATCTGCCAAGCTGAATGCGGA
CCAAACAAATGTTATTCCTTCACTGGAGTTGACTCAAATTCCGGGTCAACTTCGTCCTGC
ACTTGCACGGACGCTGTTTCTCCAACCTGCTCTACACCTTGTCTTGCCTTCTGTCCTGGT
GCAGAATGGAACAAAATGTGCTACGGGGAACACGACTGCCACTGCACGTCTAAGGCAGCA
GTGTGCGACGGTTTACCAGTGGTCGAATAA
| ProSiteProfiles |
CARD (IPR001315) - T[1-61] 9.5 |
| SUPERFAMILY |
DEATH-like_dom_sf (IPR011029) - T[2-64] 5.36E-5 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[1151-1203] 4.58E-8 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[1155-1200] 1.8E-8 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[1155-1204] 11.707 |
| SMART |
TSP1_rpt (IPR000884) - T[1158-1204] 1.9E-8 |
| Pfam |
TSP1_rpt (IPR000884) - T[1159-1203] 7.4E-5 |
| PANTHER |
Allrgn_V5/Tpx1 (IPR001283) - T[1171-1341] 1.5E-12 |
| SMART |
CAP_domain (IPR014044) - T[1193-1317] 3.1E-4 |
| Gene3D |
CAP_sf (IPR035940) - T[1201-1350] 1.5E-13 |
| Pfam |
CAP_domain (IPR014044) - T[1231-1309] 1.2E-7 |
| SUPERFAMILY |
CAP_sf (IPR035940) - T[1237-1314] 1.83E-16 |
| ProSitePatterns |
Allrgn_V5/Tpx1_CS (IPR018244) - T[1272-1282] . |
| Protein Name | Identity | Bit Score | e-value |
|---|