- Region 'REG00001456' >
- Transcript 'KH2012:KH.C3.87.v1.A...' >
- Transcript 'KH2012:KH.C1.274.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S345.g07597.01.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
S345 [127,538 / 137,480]
Amino acid sequence
Length: 990
>Phmamm.CG.MTP2014.S345.g07597.01.p
MAGFGEDLFNVFDEDPCDKGNSGSKLGNKRSGNVELSAPDEKKTKKEELDTKQTLVSEQL
PPLETDAKDDAENLASVLESLPKVETKSLSALISGCTHEVAFLSGTEVAQLRPREGKAAK
DYKFILDPFQQEALMCLDNNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKAL
SNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEGAFREDNFNTAMSVLRDAGDNARS
DFNRRGKRGGQQVLFATETFSMGVNMPAHTVVFTSIRKYDGKDFRWITGGEYIQMSGRAG
RRGMDEKGIVIMVVDEKLSPSVGKALVKVCLLLQNSEERKLVQEVFDNAMDSLSDEDRKL
PQVEASLPFLLNGIGIHHGGLLPILKETIEILFSEGLIKVLFATETFSMGVNMPAHTVVF
TSIRKYDGKDFRWITGGEYIQMSGRAGRRGMDEKGIVIMVVDEKLSPSVGKALVKGSPDP
LDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEKIEIDCKKKDWIIGVLIN
SFIYPEEVAALEKQYATLKIKDEDESMTYYRIRQQLNKLGMQLEEFIHMPKYCLPFLQPG
RLVKVRNGDHEFGWGVVVNFQKKQPKPTGRLRAEEEPPPEYVVDVLLNCDKDSIHPSSSR
IPRPAKGNDRQNEMAVVPVLVQLIKAMSSIRLFLPKDLRPLDNRQSLLRSLEEVHKRFPD
GLPLLDPLEDMCIKDERLKSIVRKIEAFERRMYKHPLHTKKEVTEIYEMCERKTKLGADV
KEAKRELKKSRTILQMDELKCRKRVLRRLDYATVSDVIETKGRVACEISAADELLLTEMV
FNGVFNTLSAAQCCALLSCFVFDEKSKSIPKLSEDLASPLRQMHEAARRIAKVSIEAKLP
LDEEDYVQSFKTMLMDVVYMWCNGSTFSQIAEITDTFEGSIIRCMRRLEELLREMCHAAK
AIGNTQLENKFAEGIRLIKRDIIFAASLYL
Nucleotide sequence
Length: 2,973
>Phmamm.CG.MTP2014.S345.g07597.01.t
ATGGCAGGTTTTGGTGAAGACCTGTTCAACGTGTTTGATGAAGATCCTTGTGATAAGGGA
AACTCTGGTTCAAAGCTAGGAAACAAACGATCTGGTAATGTGGAACTATCCGCTCCAGAC
GAAAAGAAGACAAAGAAAGAAGAATTAGACACCAAACAAACACTGGTGAGTGAACAACTT
CCTCCATTAGAAACTGATGCAAAAGATGATGCTGAAAACTTGGCCAGTGTCCTGGAATCT
TTGCCCAAAGTGGAAACAAAGTCACTGAGTGCATTAATAAGTGGCTGTACACATGAAGTG
GCTTTTCTATCTGGTACCGAAGTTGCCCAACTGCGTCCAAGGGAAGGTAAAGCTGCCAAG
GATTACAAGTTTATTCTGGATCCATTTCAGCAAGAAGCCTTGATGTGTCTGGACAATAAC
CAATCTGTCCTGGTTTCTGCTCACACTTCTGCTGGCAAAACTGTTGTGGCAGAATATGCA
ATTGCGATGTCACTCAGAGATAAGCAGCGTGTGATATACACAACTCCAATCAAGGCATTG
AGCAACCAGAAGTATCGTGACTTGTATGAGGAGTTTTCTGATGTGGGACTTATGACCGGA
GATGTTACAATCAATCCTACTGCCTCCTGCTTGGTGATGACAACAGAGGGTGCATTTAGA
GAAGATAACTTTAACACAGCTATGTCTGTGCTAAGAGATGCCGGTGACAATGCACGAAGT
GACTTCAACAGAAGAGGCAAAAGAGGTGGACAGCAGGTTTTGTTTGCAACTGAGACCTTT
TCCATGGGTGTCAACATGCCAGCTCACACTGTTGTTTTCACAAGTATTCGGAAATATGAT
GGAAAGGATTTTAGATGGATCACTGGTGGTGAATATATTCAAATGAGTGGTAGAGCAGGG
CGTCGTGGTATGGATGAGAAGGGGATTGTCATCATGGTTGTGGACGAAAAACTTTCTCCT
AGTGTTGGAAAAGCACTTGTCAAAGTATGTTTACTTTTACAAAACTCTGAAGAGAGGAAG
CTAGTACAAGAAGTTTTTGACAATGCTATGGACTCTTTATCAGATGAAGATCGCAAACTT
CCACAGGTGGAAGCTAGTTTACCATTTCTTCTCAATGGTATTGGTATTCACCATGGTGGA
CTTTTGCCTATACTGAAGGAAACCATTGAGATATTATTTTCTGAGGGCCTGATTAAAGTT
TTGTTTGCAACTGAGACCTTTTCCATGGGTGTCAACATGCCAGCTCACACTGTTGTTTTC
ACAAGTATTCGGAAATATGATGGAAAGGATTTTAGATGGATCACTGGTGGTGAATATATT
CAAATGAGTGGTAGAGCAGGGCGTCGTGGAATGGATGAGAAGGGAATTGTAATCATGGTA
GTGGACGAAAAACTTTCTCCCAGTGTTGGAAAAGCACTTGTCAAAGGTTCACCAGATCCA
TTGGACTCTGCTTTCCGATTAACATACAACATGGTGCTGAACCTACTCCGTGTGGAAGAA
ATAAACCCCGAGTACATGCTTGAAAAGTCTTTCTACCAATTCCAACACTACACTGCCATT
CCTGAAAAGATTGAAATTGATTGCAAGAAAAAAGATTGGATAATTGGTGTATTAATAAAT
TCATTTATTTATCCTGAAGAGGTGGCTGCTTTGGAGAAGCAATATGCCACACTGAAGATC
AAAGATGAGGATGAATCTATGACTTATTATCGCATACGACAACAACTTAACAAGCTTGGA
ATGCAACTGGAGGAGTTTATCCACATGCCAAAATACTGTTTGCCTTTTCTGCAACCAGGA
AGACTTGTCAAGGTTCGCAATGGAGATCATGAGTTTGGTTGGGGTGTGGTGGTGAACTTC
CAGAAGAAGCAGCCCAAACCAACAGGACGACTCAGGGCAGAAGAGGAGCCACCGCCGGAG
TATGTTGTCGATGTCCTTCTCAACTGTGACAAGGACAGCATCCACCCTTCATCGTCAAGA
ATCCCACGACCTGCCAAAGGCAATGACCGCCAAAATGAAATGGCCGTCGTGCCGGTCTTA
GTGCAACTGATCAAAGCCATGAGCAGCATACGTCTGTTTCTTCCCAAGGACTTACGACCT
CTGGACAACCGTCAATCCCTCTTACGTTCGCTTGAGGAGGTCCACAAACGCTTTCCGGAT
GGTTTGCCGCTGCTCGATCCATTAGAAGATATGTGTATTAAAGACGAGCGGCTTAAATCA
ATTGTGCGCAAGATTGAAGCGTTTGAACGTCGAATGTACAAACACCCGCTACACACCAAG
AAAGAAGTGACGGAAATTTACGAAATGTGCGAGAGAAAAACCAAGCTCGGCGCCGACGTG
AAAGAGGCGAAACGGGAGTTGAAGAAATCGCGTACGATTTTACAAATGGACGAACTGAAA
TGTCGAAAGCGAGTTCTCCGCCGACTCGATTACGCCACTGTGTCCGATGTCATTGAGACC
AAAGGACGTGTTGCTTGTGAGATCAGCGCAGCAGACGAACTTCTGCTAACAGAGATGGTT
TTCAACGGTGTCTTCAACACTCTGTCGGCTGCCCAGTGTTGTGCGTTGCTTAGCTGTTTC
GTGTTCGACGAAAAGTCCAAAAGCATTCCGAAACTGAGTGAGGATCTCGCAAGTCCATTA
AGACAAATGCACGAGGCGGCCAGAAGAATTGCTAAGGTTTCCATTGAAGCAAAACTTCCG
CTTGATGAAGAAGATTACGTTCAGTCTTTCAAGACGATGTTGATGGATGTTGTTTACATG
TGGTGCAACGGATCCACTTTTTCACAAATTGCAGAAATAACCGACACTTTTGAAGGAAGC
ATCATTCGATGTATGAGAAGACTGGAAGAGCTGCTACGCGAAATGTGTCATGCGGCGAAA
GCGATCGGCAACACACAACTCGAAAACAAATTCGCCGAGGGAATCCGCCTCATCAAGCGT
GACATCATTTTTGCAGCCAGCCTTTATCTGTGA
| PIRSF |
Ski2-like (IPR016438) - T[13-220] 4.5E-66 - T[216-252] 78.0 - T[246-330] 1.3E-41 - T[329-990] 8.0E-226 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[122-287] 9.6E-5 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[128-196] 1.1E-7 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[134-278] 11.735 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[140-317] 1.78E-23 - T[367-464] 1.29E-31 |
| SMART |
Helicase_C (IPR001650) - T[213-303] 1.0E-5 - T[361-450] 2.3E-16 |
| CDD |
Helicase_C (IPR001650) - T[247-313] 1.92902E-9 - T[358-460] 2.56514E-15 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[325-499] 12.351 |
| Pfam |
Helicase_C (IPR001650) - T[374-450] 2.7E-6 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[504-789] 2.7E-77 |
| SMART |
Ski2_C (IPR012961) - T[813-990] 6.9E-93 |
| Pfam |
Ski2_C (IPR012961) - T[816-985] 4.0E-55 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 54.419 % | 1100 | 0 |
| SKIV2_HUMAN | 32.382 % | 305 | 3.25E-87 |