- Molecular Tool 'Mitf>Wnt7' >
- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S3481.g17781.01.t
Possible name(s)
ADGRB3; HMCN1; SSPO
Gene model
Location
S3481 [5,660 / 9,552]
Amino acid sequence
Length: 605
>Phmamm.CG.MTP2014.S3481.g17781.01.p
MGWVGGVVHIQANYECQRRRGRRGRSRRQRRQDGGHRNGGRHGNDDDGHGNDDDSHGNDD
DRYGCDHRHGVDGRHGDGEHRDKKNRCDSRKRSLTWSSRSVSCGGGTQTARMSRHKDKCR
CCSVSSPRRCNAAMLFRFCLSYQVLKLTLLFVIFSDIVHCVWGEWENWGNFTSRCGGGTK
IRSRSQARSGSCGGTACSGPSSSSQRCNTHPCPFNFVSFNGCPVTCGGLKNLKNGYHLAD
ILTKTSFVAGDHEIYEKFQDGVNEATQSTNAKKDLYYQTKQDAETYDVWEIFNAISVQEK
INLKKTVYRSTCLFVTALTRAYDIEADSTFDAIDKLPEEVEEEISRHDIKYMLALACEVR
LKVYTSANAQADWHPSVLPNEQCYRQALLQLQKIEETQALEGDTMSGRAKCLSKLGLQNE
ALECYKAALKCSDLSDRPKVLRKAAKYSGADEAIKFREEALNILKKDNSCSDETVDEMLS
EISLDAQDLNNSKLFEDCLVDELDIREKMLKRETDVENKIEILLSIAGCQKQDPLNQESN
KTYQKVIKMVRRKNYPEMPADDHNTLAKCYKELENHAKAMKHFNAEINLMEKEKIYYTKT
DTKKK
Nucleotide sequence
Length: 1,818
>Phmamm.CG.MTP2014.S3481.g17781.01.t
ATGGGGTGGGTCGGGGGCGTGGTCCACATTCAGGCAAACTACGAATGCCAAAGGCGAAGA
GGTCGACGTGGACGAAGCAGAAGACAACGTAGGCAAGACGGCGGCCATAGAAACGGCGGT
AGGCATGGTAACGACGATGACGGTCATGGTAACGACGATGACAGTCATGGTAACGACGAT
GACAGGTATGGTTGTGACCATAGGCATGGAGTTGATGGTCGTCATGGTGACGGCGAACAC
AGGGACAAGAAAAACCGTTGCGACTCGCGCAAGCGCTCTTTGACCTGGAGCAGTCGTTCA
GTATCGTGCGGTGGAGGGACACAGACCGCACGAATGAGTCGACATAAAGACAAATGCCGT
TGTTGTTCTGTGTCTTCGCCAAGACGATGCAACGCCGCAATGCTGTTCAGGTTTTGTTTA
AGTTATCAGGTATTGAAACTAACTTTGTTGTTTGTTATATTCTCTGATATAGTTCACTGT
GTCTGGGGCGAATGGGAGAATTGGGGAAACTTTACAAGTCGGTGCGGAGGAGGAACAAAG
ATTCGATCCCGCTCTCAAGCCAGATCCGGATCTTGCGGAGGAACAGCTTGTTCTGGACCT
TCATCGTCTTCTCAGCGTTGCAATACACATCCTTGTCCATTCAATTTTGTAAGCTTCAAT
GGTTGTCCTGTCACTTGTGGTGGCCTCAAGAACCTCAAGAATGGCTACCACCTTGCTGAC
ATTCTGACCAAAACTAGTTTTGTGGCTGGAGACCATGAAATATATGAGAAGTTTCAAGAT
GGAGTGAATGAAGCAACACAATCCACCAATGCTAAAAAAGATTTGTATTATCAAACAAAA
CAAGATGCTGAAACCTATGATGTATGGGAGATTTTCAATGCAATAAGTGTTCAGGAAAAA
ATTAATTTGAAGAAAACAGTTTATAGAAGCACATGTTTATTTGTTACTGCATTAACCCGG
GCTTATGACATTGAAGCAGATTCGACCTTTGATGCAATTGATAAACTGCCTGAAGAAGTA
GAAGAAGAAATCTCAAGGCATGACATCAAATACATGCTTGCACTGGCATGTGAAGTTAGA
TTAAAAGTTTACACGTCAGCAAATGCCCAGGCTGATTGGCATCCTAGTGTTCTTCCTAAT
GAACAATGCTACAGACAAGCACTGCTACAATTACAAAAAATTGAAGAAACACAAGCATTA
GAAGGTGATACCATGTCTGGTAGAGCCAAATGCCTTTCAAAACTTGGGTTGCAAAACGAG
GCATTAGAATGCTACAAAGCAGCACTTAAATGTTCAGACTTAAGTGATCGCCCTAAAGTT
CTTCGTAAAGCAGCCAAATACAGCGGCGCAGATGAGGCAATAAAATTCAGGGAAGAGGCA
CTCAACATTTTGAAAAAAGACAACAGCTGCTCTGATGAAACTGTAGATGAAATGCTATCT
GAAATTTCTTTGGATGCACAGGATTTAAACAACTCCAAACTATTTGAAGATTGTCTTGTT
GATGAGTTGGACATTAGAGAAAAAATGTTGAAGAGGGAAACAGATGTAGAAAATAAAATT
GAAATTCTGTTAAGTATAGCAGGATGTCAAAAACAGGATCCCCTAAACCAAGAATCCAAT
AAAACTTATCAAAAAGTTATTAAGATGGTAAGGAGAAAAAATTATCCTGAAATGCCTGCT
GATGATCACAACACATTGGCTAAATGTTATAAGGAATTAGAAAATCATGCCAAAGCTATG
AAACATTTCAATGCTGAAATAAACCTGATGGAAAAGGAAAAAATATATTACACAAAAACA
GATACAAAGAAAAAATAA
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[158-212] 5.23E-8 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[158-212] 3.3E-8 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[159-213] 11.33 |
| SMART |
TSP1_rpt (IPR000884) - T[162-213] 0.0024 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[381-484] 9.1E-6 - T[486-602] 1.2E-5 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[382-471] 1.04E-5 - T[451-596] 2.11E-8 |
| SMART |
TPR_repeat (IPR019734) - T[402-435] 4.6 - T[560-593] 13.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|