- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C5.254.v3....' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S3536.g17819.01.t
Possible name(s)
COL21A1; COL24A1; MARCO
Gene model
Location
S3536 [783 / 2,532]
Amino acid sequence
Length: 424
>Phmamm.CG.MTP2014.S3536.g17819.01.p
MLLQLTAIFLYYTSLVSGQQQCSYVTVPVCGDDVNNVTPGSLISGRGDRGVAGPPGKMGP
RGFTGQKGDFGAVGLKGDVGPPGEVGLRGFPGIKGDKGVVGQKGAVGLTGAVGPSGESGR
HGPIGPTGYKGDVGPPGEVGLRGFPGIKGDKGVVGQKGAVGLTGAVGPSGESGRHGPIGP
TGYKGDVGPPGEVGLRGFPGIKGDKGVVGQKGAVGLTGAAGSSGESGLQGPVGPKGDKGA
VGQKGEALDLEDFKREIRERLRGIDSLFPVSCSTSTVEGYQRLRDNKTGVCDDKWTGVVG
LTGSAGPSGESGLQGSVGPKGDKGAVGQKGEALDLEDFKREIRERLRGIDMLFPVSCSTS
SVEGYQRLRNNKTGVCDDKWTVFQRRFDGSVDFQRNWQEYKDGFGNMEGEFWLGEQIILF
KRVN
Nucleotide sequence
Length: 1,275
>Phmamm.CG.MTP2014.S3536.g17819.01.t
ATGTTGTTACAACTGACAGCAATTTTCCTGTATTATACGTCACTGGTCAGTGGACAGCAG
CAATGCAGTTACGTCACGGTTCCAGTATGCGGTGATGACGTCAATAATGTCACACCTGGG
AGTCTGATAAGTGGGAGGGGTGACAGAGGCGTCGCTGGGCCACCAGGAAAAATGGGACCT
AGGGGATTTACTGGGCAAAAAGGGGATTTCGGCGCCGTAGGTTTAAAAGGCGATGTTGGG
CCGCCCGGCGAAGTGGGTTTACGGGGATTTCCCGGAATAAAAGGCGATAAAGGAGTTGTT
GGACAAAAGGGAGCTGTTGGTTTGACTGGTGCGGTTGGGCCAAGCGGAGAATCTGGTCGG
CATGGTCCGATTGGGCCTACAGGATATAAGGGAGATGTGGGGCCACCCGGCGAAGTGGGT
TTGCGGGGATTTCCCGGAATAAAAGGCGATAAAGGAGTTGTTGGACAAAAGGGAGCTGTT
GGTTTGACTGGTGCGGTTGGGCCAAGCGGAGAATCTGGTCGGCATGGTCCGATTGGGCCT
ACAGGATATAAGGGAGATGTGGGGCCACCCGGCGAAGTGGGTTTGCGGGGATTTCCCGGA
ATAAAAGGCGATAAAGGAGTTGTTGGACAAAAGGGAGCTGTTGGTTTGACTGGTGCGGCA
GGGTCAAGCGGAGAATCTGGTTTACAAGGTCCGGTGGGTCCTAAAGGGGATAAAGGGGCT
GTTGGGCAAAAAGGAGAAGCCTTAGACTTGGAAGATTTCAAGCGAGAAATAAGAGAAAGA
CTTCGAGGCATTGATAGTTTGTTTCCTGTCAGCTGTTCGACGTCAACAGTGGAAGGTTAC
CAGCGATTACGTGATAACAAAACTGGGGTCTGTGACGACAAATGGACAGGAGTTGTTGGT
TTGACTGGTTCGGCAGGGCCAAGCGGAGAATCTGGATTACAAGGTTCTGTTGGTCCTAAA
GGCGATAAAGGGGCTGTTGGGCAAAAGGGAGAAGCCTTAGACTTAGAAGATTTCAAGCGA
GAAATAAGAGAAAGACTTCGAGGCATTGATATGTTGTTTCCTGTCAGCTGTTCAACGTCA
TCAGTGGAAGGTTACCAGCGATTACGTAACAACAAAACAGGGGTCTGTGACGACAAATGG
ACGGTTTTTCAACGACGGTTTGACGGAAGTGTGGATTTTCAGCGAAACTGGCAGGAATAT
AAAGATGGATTCGGAAACATGGAAGGAGAATTCTGGCTCGGTGAACAAATAATTTTGTTT
AAACGCGTAAATTGA
| Pfam |
Collagen (IPR008160) - T[47-104] 9.2E-10 - T[98-152] 4.4E-8 - T[149-206] 3.1E-8 - T[188-246] 4.6E-9 |
| Gene3D |
Fibrinogen_a/b/g_C_1 (IPR014716) - T[338-419] 5.1E-19 |
| ProSiteProfiles |
Fibrinogen_a/b/g_C_dom (IPR002181) - T[348-424] 16.288 |
| SUPERFAMILY |
Fibrinogen-like_C (IPR036056) - T[361-418] 1.23E-19 |
| Pfam |
Fibrinogen_a/b/g_C_dom (IPR002181) - T[378-417] 1.1E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 37.542 % | 115 | 1.24E-27 |
| MARCO_HUMAN | 40.52 % | 111 | 1.42E-26 |
| COOA1_HUMAN | 39.103 % | 115 | 1.34E-27 |