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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S441...' > 
  2. Clone 'cicl031g06' > 
  3. Transcript 'Cisavi.CG.ENS81.R90....' > 
  4. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S353.g07679.01.t

Possible name(s)

SMG5; SMG6; SMG7

Gene model

Phmamm.CG.MTP2014.S353.g07679

Location

S353 [10,271 / 20,684]

Sequences

Amino acid sequence

Length: 868

>Phmamm.CG.MTP2014.S353.g07679.01.p
MSRSSADYSAKHTVSPEVKSISAKRLYRGVLECVKKLDAGHQHRRSLISLFQPNQVKLRH
KLREACERLLFTYPNEYGRKAEELLWKKVYYDVIHTVKSGRKFQSNAPGALQQRHLEPHF
RQFLYSAMGFYHYLLLRLQSKVSSGLVEIDFSLATRPLHGRSNLSSGHTNYGMSKNSQDE
DEKDLEEWMISTSYRILVCLGDLSRYQMEFGGSRSRPNRFYQLALLARPNSGMPHNQMAT
LSGHHSWWGLVAAYHYCRALHAEITFEGAEGNLQKLLDRNKKLFYQLPTEALDTIVSADV
YKKEHTRIFIISFLYLCDLLRPKTYATDVEIAGLCKRLIDALIVCLTNINNDPQDSEADA
VEEKSMRLADTTSNVNNSRHVGNTKRNSAGAHKQESTAGNLVNQHTNKYHHHMQQHRLNE
SIVFKICVLSLVNVHDLQTCRSNRSSAAIAFALAFFSHLLGHLVQCLSKAELADSALSNG
TDSKAEGDGKSGKSRKSKVRMRRRRRVGGRKGGVDGDLSEGEDTMAGGDAVSDPELTEDS
DSDSDTFSESSGSGTRLSQEDLSSHDGEESDTPDAEHPDKKFQPPETKKSSSQSGELPQQ
NVASLQDLSNKMFQPSSLRRKITLAPSFLQHLSSPAKPAKVAEKDKTDDVLATSHSTLKV
GDKEKDETTSKMNDDNNTEKKPVQVERTDAEKEASVRRLRHLSRHHHVTAAMKLLADWLW
ANERVAVACAKSSRALWSRLVCFVNLLPTEKEMMTIDEIRDDPILSEQLKSITAQSEPEK
GENEKENQSSNCPKPESGDTDSKQVGGKTKISIQKREKDTAVEASRWRQTRPLPEDHVVY
NMNAVRDANVKSGINLSKSYTDMSDIQQ

Nucleotide sequence

Length: 2,847

>Phmamm.CG.MTP2014.S353.g07679.01.t
GCAGCTACAAGAGTTGTAATATTAAGAAACAATTTTTAAATTCGTGCCGAAAAAGAAATA
AAGATGAAAGATTGCTCATGAAAAACTTTGTTATGTGCAAAACAATAAAACGAATCCGAA
TGATTTAAAGCTTTTTGACTGACCATACATTTCAAACATGGACAATAATTTAACGATCTT
TGCAGAAATAACGGTCAGAATGTGACGAACCGAACAGTAGAGGATAAAAAATAAAAAAGT
TATGTCTCGTTCAAGTGCAGATTACTCGGCGAAGCACACAGTCTCTCCTGAGGTGAAAAG
CATTTCTGCAAAGAGACTATATCGAGGAGTCTTGGAGTGTGTTAAAAAGCTGGATGCCGG
TCACCAACATCGACGAAGTTTGATCAGCCTTTTTCAACCCAATCAAGTAAAGTTAAGGCA
TAAACTAAGAGAAGCATGTGAACGTTTGTTGTTCACTTATCCAAATGAATATGGAAGAAA
GGCAGAAGAACTTTTGTGGAAGAAAGTTTATTACGATGTCATACATACAGTGAAATCTGG
TCGAAAATTCCAATCAAATGCCCCTGGTGCTCTGCAACAACGCCACTTGGAGCCACATTT
CCGTCAGTTTCTCTACTCTGCGATGGGATTCTATCATTACTTGTTACTGCGCTTACAATC
AAAAGTCAGCTCTGGTCTTGTTGAAATTGATTTTTCCCTTGCAACGAGGCCTCTGCATGG
GCGAAGCAACCTGTCATCAGGTCACACCAATTATGGCATGTCCAAAAATTCTCAGGATGA
GGATGAAAAAGATTTAGAGGAATGGATGATCAGCACGAGTTACAGGATTCTTGTCTGTCT
TGGTGATTTGAGCAGGTACCAGATGGAATTTGGAGGTTCTCGTTCACGTCCTAACCGTTT
CTACCAGCTGGCTTTGTTGGCGCGGCCCAATTCTGGGATGCCACACAACCAAATGGCCAC
ACTTTCTGGTCATCACTCTTGGTGGGGTCTGGTTGCTGCTTATCACTATTGTAGAGCACT
TCATGCTGAAATTACATTTGAGGGAGCAGAGGGCAACTTACAAAAACTCCTTGATCGCAA
CAAGAAGCTTTTTTACCAACTGCCAACTGAAGCTTTGGACACAATTGTGTCTGCAGATGT
ATATAAAAAAGAACATACAAGAATTTTTATCATATCGTTTTTGTATCTTTGTGACCTTTT
ACGACCAAAGACTTACGCTACTGATGTAGAGATTGCAGGCTTGTGCAAGCGACTTATCGA
TGCTCTAATTGTGTGCCTTACAAATATTAATAACGACCCACAAGATTCTGAAGCAGATGC
AGTAGAAGAAAAATCTATGCGCTTAGCTGACACAACTTCTAACGTAAACAACAGTCGACA
CGTTGGAAATACGAAACGAAACTCGGCTGGCGCCCACAAACAAGAATCAACCGCTGGAAA
CTTAGTGAACCAACACACCAATAAATACCATCACCACATGCAGCAGCACAGACTCAACGA
ATCAATCGTTTTTAAGATTTGTGTACTCAGCCTAGTAAATGTTCACGATCTTCAGACGTG
CCGATCAAACCGATCGTCAGCCGCAATTGCATTTGCCCTTGCCTTCTTTTCTCATCTTCT
TGGGCATCTGGTGCAGTGTTTATCCAAAGCAGAGCTCGCCGATAGTGCTTTGTCCAACGG
GACTGACTCGAAAGCTGAAGGCGATGGAAAGAGTGGCAAGAGCAGAAAGAGCAAAGTGAG
AATGCGTCGGAGGAGAAGAGTGGGAGGAAGAAAGGGCGGAGTGGATGGAGATCTTAGTGA
GGGAGAAGATACTATGGCTGGTGGAGATGCAGTTTCTGATCCTGAACTTACCGAAGACTC
TGATTCCGACTCTGACACGTTTTCCGAGTCGAGCGGATCCGGAACTCGCCTCAGTCAGGA
AGATCTCTCCTCTCATGATGGGGAAGAGAGCGATACTCCGGATGCAGAACATCCCGATAA
AAAATTCCAGCCTCCTGAAACCAAGAAATCGTCATCACAATCGGGGGAACTCCCTCAGCA
GAATGTAGCCAGCCTGCAAGATTTGTCCAACAAAATGTTTCAGCCTTCGTCTTTACGTCG
TAAGATCACACTGGCCCCGTCTTTCCTGCAACACCTCAGCTCACCAGCAAAACCTGCGAA
GGTCGCTGAAAAAGACAAGACCGATGACGTCCTTGCTACGTCACACTCAACTTTAAAAGT
GGGCGACAAAGAGAAAGACGAAACTACCTCGAAGATGAATGACGATAATAATACTGAGAA
GAAACCTGTCCAAGTCGAACGAACTGATGCAGAAAAAGAAGCTTCGGTCAGGCGTTTACG
TCATCTTTCACGTCATCACCACGTCACTGCAGCAATGAAGCTGCTTGCTGATTGGCTGTG
GGCTAACGAGAGAGTAGCGGTGGCCTGTGCGAAAAGTTCGCGGGCTTTATGGAGTCGCCT
GGTTTGTTTTGTGAACTTGCTCCCAACGGAGAAAGAAATGATGACGATTGATGAAATCCG
AGACGATCCGATTTTATCCGAACAACTAAAAAGCATCACAGCTCAATCCGAACCAGAAAA
AGGCGAAAACGAGAAAGAAAATCAATCCAGTAACTGTCCGAAACCAGAGTCCGGTGACAC
CGATAGTAAGCAAGTTGGAGGGAAAACAAAAATATCCATACAGAAAAGAGAGAAAGACAC
AGCTGTGGAAGCCAGCAGGTGGCGACAGACGCGCCCGCTACCCGAAGATCACGTGGTTTA
CAACATGAATGCAGTTCGTGACGCGAATGTAAAGAGTGGCATCAATTTGAGCAAATCCTA
CACAGATATGTCCGATATACAACAGGT

InterProScan

SUPERFAMILY
TPR-like_helical_dom_sf (IPR011990) - T[27-847] 7.96E-46
Pfam
EST1 (IPR019458) - T[80-210] 2.2E-20
Pfam
DNA/RNA-bd_Est1-type (IPR018834) - T[219-469] 6.4E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMG5_HUMAN 30.631 % 290 6.65E-84