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  1. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S354.g07691.01.t

Possible name(s)

NDC1

Gene model

Phmamm.CG.MTP2014.S354.g07691

Location

S354 [24,630 / 34,814]

Sequences

Amino acid sequence

Length: 641

>Phmamm.CG.MTP2014.S354.g07691.01.p
MDSHWLILHEFKFRTYSALFWSWTTNFLFLQVFFFLWVINPWNHVYVVHDYVLRLLSFHV
WLVIFTLAFVSATYIALFANHFSVVPKVEVSHYETLKKCFHGKHVMYVLCHSLLAIVIFT
FVSLLVPSQYSSPLTDCSAQASTGEICFNEHWLLLLLFSGFVGTVNFIANEKEQKYCLSF
PLVQQTRLLYLKCNFSTIVKNATISCTRLLRNFVMFYYFLGFVPRDLIAGFLGLKTCDYH
VISVMNIFAILPILWTLLLCGTLLLVFHDVSWNLFNLCNTKRYNFLLESVFPEDATKILT
ANLNGKQPPLVQHLAFQHLSHVTCHSANVRKQIFSLERGGVGNRSSKWNVIADECLLCIK
NLTNALTDHNLKHSSLFDNDQKGISRLSSKSSTSSQSSTDEKSPFLSVSTLRRRPLQSDA
SNSPNMSYFDVSSLDATTTNSGNVNSPYRSGPNLVIPTPKLWTRQLYKGSFSNSPVTQNA
DGYNEKVDQHQLNTQMSGLFARIEKLAKKFSIVSYLIKKMPDRSAANLFSGRCVCKWALQ
SISIVVEASFTEDNFGVVQRRLHEIIAVLLDLHTALEKYNKLPVASSSQAVLSLLREIRG
LRNECKNAIYRITNTFGSHLDAVPINPDHKRKLRGFVEHKE

Nucleotide sequence

Length: 2,087

>Phmamm.CG.MTP2014.S354.g07691.01.t
GCGCGGGCCACACAAATTTTGCAGCGTGTAACTTACTAACTTGTTATTGAAGCACTTGCT
TTTAATTTCAGTCTTACAAACGTCGCTTTTTGGATCTTACTTATGAGCCATGACATAAAC
CATCGAAAATGGATTCACATTGGCTAATTTTACACGAATTTAAATTTCGAACATATTCTG
CACTGTTCTGGTCATGGACAACAAACTTTCTTTTCCTACAAGTGTTTTTCTTTTTGTGGG
TGATCAATCCTTGGAATCATGTTTACGTGGTTCATGATTATGTTCTACGCTTATTGTCAT
TTCATGTGTGGTTAGTAATATTCACTTTGGCTTTTGTAAGTGCAACCTACATTGCATTGT
TTGCCAACCACTTCTCAGTTGTTCCCAAGGTAGAAGTTTCTCATTATGAAACACTTAAAA
AATGTTTCCATGGAAAACATGTGATGTACGTCTTGTGCCATAGTTTGCTGGCTATTGTCA
TTTTTACCTTTGTGTCTTTGTTGGTACCAAGTCAGTATTCTTCACCTCTTACTGACTGCT
CTGCTCAAGCATCAACTGGAGAAATATGCTTCAATGAGCACTGGTTGTTGCTGCTTCTGT
TCAGTGGCTTTGTTGGGACTGTCAATTTCATAGCCAATGAAAAAGAACAAAAATATTGCT
TGAGTTTTCCATTAGTTCAACAAACAAGGCTACTGTATTTGAAATGCAACTTTTCAACAA
TTGTAAAGAATGCCACAATTTCATGCACAAGACTTCTTCGCAATTTTGTAATGTTTTATT
ACTTCTTGGGATTTGTGCCCAGAGATTTAATAGCAGGTTTTCTTGGCCTTAAAACATGTG
ATTACCATGTGATAAGTGTTATGAACATATTTGCAATTCTACCAATCCTTTGGACATTGC
TTCTTTGTGGAACTTTACTATTGGTTTTTCATGATGTGTCTTGGAATTTATTCAACCTGT
GCAACACGAAGCGATATAATTTCTTGCTCGAGTCAGTGTTTCCAGAGGATGCAACCAAGA
TCCTCACTGCCAATTTGAATGGGAAACAGCCCCCACTTGTACAGCATTTGGCATTCCAGC
ATCTCAGTCATGTCACTTGCCACTCAGCAAATGTTCGAAAACAAATATTTTCTTTGGAAA
GGGGAGGTGTTGGTAACAGGTCCTCAAAGTGGAATGTGATTGCCGATGAGTGTTTGCTTT
GTATCAAAAACTTGACCAATGCCTTGACCGACCACAATCTTAAACATTCAAGCCTCTTTG
ATAATGACCAGAAGGGCATTTCTCGCCTTTCCTCAAAATCATCAACCTCATCTCAGTCTA
GCACAGATGAAAAATCTCCATTTTTATCTGTTTCCACGTTGCGTCGACGTCCATTGCAAT
CTGATGCAAGCAATTCTCCAAACATGTCATACTTCGATGTATCTTCTTTGGACGCCACCA
CAACAAACTCGGGCAACGTAAATTCGCCTTATCGCAGTGGACCAAATCTGGTTATCCCGA
CGCCAAAGTTGTGGACACGACAGCTGTATAAGGGGAGCTTCAGCAATTCACCAGTGACAC
AAAATGCAGATGGTTATAACGAAAAGGTCGACCAGCACCAGTTAAATACACAAATGAGCG
GCCTTTTTGCAAGGATCGAGAAATTGGCCAAGAAGTTCTCCATCGTTTCTTACTTAATTA
AAAAGATGCCAGACCGTAGCGCTGCCAACTTGTTTTCCGGGCGATGCGTGTGTAAATGGG
CACTGCAGAGCATTTCGATTGTGGTGGAAGCCTCATTTACCGAGGACAATTTTGGCGTGG
TGCAGCGCCGACTTCATGAGATTATAGCAGTGCTTCTGGATCTCCACACTGCCCTGGAAA
AATACAACAAACTGCCAGTAGCTTCTTCATCGCAAGCAGTACTTTCCCTATTGCGAGAAA
TTCGTGGCTTGAGGAACGAATGCAAAAACGCGATTTATCGCATCACTAACACGTTTGGCT
CCCACCTTGACGCCGTTCCCATCAACCCCGACCATAAACGCAAGCTACGGGGGTTTGTTG
AACACAAGGAATGATTTGTGATTGTATGAAGTAAATTTGATTCGGTT

InterProScan

PANTHER
Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[2-641] 4.8E-100
Pfam
Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[20-634] 7.0E-70

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NDC1_HUMAN 29.711 % 234 5.73E-68