- Transcript 'Phmamm.CG.MTP2014.S8...' >
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- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S366.g07866.02.t
Possible name(s)
PABPC3; TIA1; TIAL1
Gene model
Location
S366 [42,659 / 50,979]
Amino acid sequence
Length: 457
>Phmamm.CG.MTP2014.S366.g07866.02.p
MNINFNDDEAHPRTLYVGNLDPKVSESLIMELFGVIGPVKSCKMIQDEIRVNWATRPSGK
RDTSKGAVLAGHHHIFVGDLAPETTSDDLKLYFGRVADVSDARVMRDLTTNKSKGYGFVS
FVQYQDAQDIVEKKKVIPDALHGRQVRCNWAARKGGQTGSNFQKLDYQTVVSQSSMTNCT
VYLGGCMSGLTEQLMRETFVGFGNILEIRVFPDKGYAFIRFDNHNDAAQAITAKHGSCLE
GYTIKCSWGKEGASLGPGSNPGGGYTNGISQPSMDNMNMNMNQWSPAGNDMWSQMGQNQQ
QQYNQWTQWRNQGQQQNPWNTWTPNQMGSSNPWGAPSQSNTWGTNTSNQSMPQQQQQQQQ
QQQQQQQQPQQQQQQQQQQPNPWGWPTMGQPGGDGWGTATSQGNNQGEQMWSNSWNSQSL
GNVNQTNGGNPNALVSGSGDPGNPNHSQSQATNGFGL
Nucleotide sequence
Length: 1,374
>Phmamm.CG.MTP2014.S366.g07866.02.t
ATGAACATCAACTTTAATGATGATGAGGCTCACCCAAGAACACTGTATGTTGGGAACCTC
GATCCTAAAGTATCGGAATCCCTTATTATGGAGTTATTTGGTGTGATTGGTCCTGTCAAA
AGTTGTAAAATGATCCAAGACGAAATTCGTGTAAATTGGGCAACAAGACCATCAGGAAAA
CGAGACACAAGCAAAGGTGCTGTTCTTGCAGGTCACCATCATATTTTTGTGGGTGACTTG
GCTCCCGAGACGACTTCTGATGACTTAAAACTCTATTTTGGCAGAGTTGCTGATGTTTCA
GATGCAAGAGTGATGAGAGACTTGACCACAAATAAATCAAAAGGTTATGGATTTGTTTCT
TTTGTTCAATATCAGGATGCCCAGGACATCGTTGAAAAGAAGAAAGTAATTCCTGACGCT
CTCCACGGGCGTCAAGTCCGTTGTAACTGGGCTGCAAGGAAGGGCGGGCAAACTGGTTCA
AATTTCCAAAAGCTTGACTACCAGACCGTTGTGTCCCAATCGAGTATGACAAACTGTACA
GTTTACCTCGGAGGATGTATGTCAGGATTAACGGAACAACTGATGAGGGAGACCTTCGTT
GGATTTGGCAATATTCTTGAAATCAGAGTATTTCCAGATAAAGGTTATGCCTTCATCAGG
TTTGACAATCATAATGACGCAGCTCAAGCCATCACAGCGAAGCACGGCTCCTGTTTGGAG
GGTTACACGATCAAATGTTCTTGGGGTAAAGAGGGGGCTTCCCTGGGGCCTGGATCCAAC
CCTGGTGGAGGCTACACAAACGGGATTTCCCAACCTTCTATGGACAACATGAACATGAAT
ATGAACCAGTGGTCACCGGCAGGCAATGACATGTGGAGTCAAATGGGACAGAACCAACAG
CAACAATATAACCAGTGGACACAGTGGAGAAACCAAGGTCAACAACAAAACCCCTGGAAC
ACTTGGACCCCTAACCAAATGGGGTCAAGTAACCCTTGGGGGGCCCCAAGTCAAAGTAAC
ACTTGGGGAACCAACACTTCGAACCAGTCAATGCCACAACAACAACAACAGCAACAACAG
CAACAACAGCAGCAGCAGCAACAACCACAGCAACAACAACAGCAACAACAACAACAGCCT
AATCCATGGGGGTGGCCAACCATGGGCCAGCCTGGGGGCGATGGTTGGGGCACAGCTACA
AGTCAGGGAAACAACCAGGGTGAACAGATGTGGTCGAACTCATGGAACAGCCAAAGTCTT
GGAAATGTAAATCAAACAAACGGTGGAAATCCCAATGCACTCGTTTCAGGTTCGGGTGAC
CCTGGGAATCCCAATCACTCCCAATCCCAAGCCACCAACGGATTTGGACTTTAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-68] 1.5E-8 - T[70-157] 6.1E-19 - T[158-255] 4.1E-22 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[5-59] 2.42E-10 - T[74-250] 1.91E-36 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-66] 8.638 - T[73-153] 16.142 - T[179-251] 14.778 |
| SMART |
RRM_dom (IPR000504) - T[14-73] 0.66 - T[74-149] 3.2E-16 - T[180-247] 6.7E-15 |
| Pfam |
RRM_dom (IPR000504) - T[15-47] 8.2E-6 - T[75-133] 1.6E-15 - T[181-245] 1.3E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TIAR_HUMAN | 46.341 % | 250 | 2.28E-79 |
| TIA1_HUMAN | 47.038 % | 260 | 7.29E-83 |