- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Moocci.CG.ELv1_2.S65...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S3925.g18103.01.t
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
S3925 [572 / 5,350]
Amino acid sequence
Length: 512
>Phmamm.CG.MTP2014.S3925.g18103.01.p
MGGSSKFDKTPWGFRVTKKTVGLTASPGSGKSNSVEQGCKHIFKLLANLDVKIPPVQVKE
NRDELSAFTTNEDFVLEDFKFNVPDRRGHQVYENEVIDFREKSKLLEERELSHHFHIYAN
HLKIYNDALLINEHVRESDAIKYIEENLFQTFHDIEMKLRELYDKSEISKLAKNTPSPLL
QKLIEIIHQNFSSNPNSRCIIFARTRDIATSLVTCLADSQPLMGFNLNPDYLTGSGAKNS
QGGLTKPLQDDKLKRFRDGKSKVMIATSIADEGIDIKECNLVITYNHCSSEIAQVQRKGR
GRAKQSKMFILAYSDHHYIERERLNRDRNELTRQTLEYLQTMDRRKILAEIEEIQEKNSK
VDVPTTSGQQRTDDIWKLSCSKCRREVTTSDQFSRVKKHYVCVDKEFPSKAFKCDMRTVR
VSSEELVSGKLLCGEITCRQEWGSQMIYKHHKVYVLAIKNFVLSNGKVTKVAKKWKDAPF
QVETSYDDLIGSQGSDVELDEDIDDDIYEFEF
Nucleotide sequence
Length: 1,539
>Phmamm.CG.MTP2014.S3925.g18103.01.t
ATGGGGGGTTCCTCAAAGTTTGACAAAACACCTTGGGGGTTCCGTGTCACTAAGAAGACT
GTCGGCTTAACAGCATCTCCAGGTTCAGGAAAATCAAACAGCGTCGAACAAGGATGCAAA
CATATTTTTAAGCTTCTTGCAAATTTGGATGTTAAAATTCCACCAGTTCAAGTGAAGGAA
AATCGTGATGAACTCTCGGCTTTTACTACAAACGAAGACTTCGTTTTGGAAGACTTTAAA
TTCAACGTCCCTGACCGTCGAGGACATCAGGTGTATGAAAATGAAGTCATTGATTTTAGA
GAGAAAAGCAAACTACTTGAGGAACGTGAACTTTCACACCATTTTCATATTTATGCAAAC
CATCTTAAAATTTACAATGATGCACTTCTGATAAATGAACATGTCCGAGAATCCGATGCG
ATCAAATACATCGAGGAGAATTTATTTCAAACATTCCACGACATCGAGATGAAACTCCGA
GAACTCTATGACAAAAGTGAAATATCGAAATTGGCCAAAAACACCCCCAGTCCACTGCTA
CAGAAGCTCATAGAAATCATACATCAAAATTTCTCTTCCAATCCCAATTCTCGTTGTATT
ATCTTCGCACGAACGCGGGACATCGCAACTTCACTGGTGACTTGTCTCGCTGATTCACAA
CCGCTGATGGGATTTAATCTCAATCCTGATTATTTGACGGGATCTGGTGCAAAAAACTCC
CAGGGAGGTTTAACCAAGCCTCTACAAGACGACAAACTGAAAAGATTCCGAGATGGGAAA
AGCAAAGTGATGATTGCAACTTCGATTGCTGATGAAGGGATTGATATTAAAGAATGCAAT
CTTGTGATCACATACAACCATTGCAGCAGTGAAATTGCACAAGTGCAAAGAAAAGGACGT
GGTCGAGCTAAGCAGAGCAAAATGTTCATTCTCGCATATAGTGATCATCACTATATTGAA
AGAGAGCGTCTGAACAGGGATAGAAATGAACTGACTCGCCAAACTCTTGAATATCTGCAA
ACTATGGATCGAAGAAAAATCCTGGCAGAGATCGAGGAAATCCAAGAGAAAAATTCCAAG
GTTGATGTTCCCACCACCAGTGGTCAGCAGAGAACAGATGACATTTGGAAACTTTCGTGC
AGCAAATGCAGAAGGGAAGTGACTACATCAGATCAGTTCAGCAGAGTGAAAAAGCATTAT
GTTTGTGTGGACAAAGAGTTCCCATCTAAAGCATTCAAGTGTGATATGAGGACAGTAAGA
GTGTCGTCAGAAGAACTTGTCAGTGGAAAATTATTGTGCGGGGAAATAACCTGCAGACAA
GAATGGGGATCGCAAATGATCTACAAACATCATAAGGTCTATGTGTTGGCGATTAAAAAC
TTTGTTTTGAGTAATGGCAAAGTGACAAAGGTGGCAAAGAAATGGAAAGATGCTCCATTC
CAAGTGGAAACATCTTATGATGACCTCATCGGCTCGCAGGGGTCGGATGTTGAGTTGGAT
GAAGACATAGATGATGATATCTATGAGTTTGAGTTTTAA
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[18-318] 2.96E-23 |
| CDD |
Helicase_C (IPR001650) - T[167-307] 3.79582E-13 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[179-359] 14.647 |
| Pfam |
Helicase_C (IPR001650) - T[184-303] 7.5E-16 |
| SMART |
Helicase_C (IPR001650) - T[230-304] 2.9E-11 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[366-492] 22.143 |
| Gene3D |
RLR_C_sf (IPR038557) - T[366-506] 2.5E-23 |
| Pfam |
RLR_CTR (IPR021673) - T[376-483] 6.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 30.469 % | 190 | 3.92E-53 |
| DDX58_HUMAN | 29.112 % | 182 | 2.07E-49 |
| IFIH1_HUMAN | 26.531 % | 159 | 1.36E-41 |