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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'
  2. Transcript 'KH2012:KH.C10.558.v1...'
  3. Transcript 'KH2012:KH.C5.42.v1.A...'
  4. Transcript 'Moocci.CG.ELv1_2.S48...'
  5. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S39.g01511.01.t

Possible name(s)

LRP4; LRP6

Location

S39 [45,740 / 55,014]

Sequences

Amino acid sequence

Length: 1,226

>Phmamm.CG.MTP2014.S39.g01511.01.p
MNGSHVEDFISVGLESLEGLAVDWIGRNVYWSDAATKRIEVARMDGTSRRPIIWENLDDL
RSLAVDPSNGYIYWSQWGPDPCIMRAELDGSNPVEINENPVGRPNSLTIDYAEQRLYFVD
LEIRTIVSTNMNGSDLREVVRGKSNQTFFSLTLFGDYIYWSDSTKKSIERANKITGNNSR
VIEKGLSDLEDMLVYHASRQSGVTACSHLNGGCQHLCLSLHAGRHKCSCPAHYTLNPDNV
TCAAPKNFLLVSRNKYITRIIFESSNGQVGVVPGGVMGNRGSSKRQQPQPVTIKPGPDAV
LPIRGIKEAFAIDYDPIDQRVYWLDYKLAQIWSSRPNGTDRRILLDGNRTGHKPYDIAVD
PYSRAMYWTDAANNTINLIKLNGTVVGTVLTGPIKPGVSGRSSFEAMPRKLAVDPMRGRM
YFTNICRDVKSCRLKIVVATIDGSDPIVLIPRSLRNVTALAVDSKSKQLFWADRNIIEKS
TLDGKERTAFIQTGLLAPVGLTVFGENLYWVDAEVSYLNRMFLKREQQFESRCFVTTDKH
PCKTDNGGCSHICLPNEDGTSKCLCPNHLTKSDEFVCIEPPTCPPNHFTCSSRNGCVPIN
WLCDGKPECDDKSDEMDCPPCAPDQFQCGSIVSTADHAGNNKLLLDKLVEAAGSQCVPKD
ARCNGQIDCRDSSDEIHCDCLENEFECASGECIPLSKKCNQKKDCSDGSDEICSSQGTAQ
SDPDNTYVIVIGIFCGCVLLIGIVVFLRHCMAHNNSSYSTPVFLWSPGNLNSNLNVNLEF
QQHVDPADPASHRTSASGNSGDAGHKKASSNGPSHSTTSFNVSIVHPRGRSAAHSKGIPL
RVIHPGVNSALAAPWPGYPYAVRGNETVVVDRPGIPGASSSSSSKTVVNCFPETWNPPPS
PATDRSEGKSGECYYPEAPLPRPPYHHKCRSSRGHRRQHHRNTGPPPPTPCTTEDNCDDA
EVCSKSRAYVNTSKRGAAGSRSGGSSGGSVPHDPPPPYFRHHHHQCCYHCPQHYSGHQQR
GCHHFSPAYHHSRCDGMENSSSSSSRCQSCDCQNSDTADCSCTEASQPSCPPSYHGRQRS
SRRRSARKYTSDLNYDSDPFAPPPTPHSQYLSECCYTHGETTEADEPLEDDIPEQANREV
EEITSRIDEGSESDRLLEGAAEPDFFDPNELDEIEEEDEEGRTTDDADTVLLAPRQGGDV
SARTSPSITERSFFARNPPPSPVSSS

Nucleotide sequence

Length: 3,681

>Phmamm.CG.MTP2014.S39.g01511.01.t
ATGAACGGCTCTCACGTGGAAGATTTCATCAGTGTTGGACTTGAATCCCTCGAAGGTTTG
GCTGTTGACTGGATTGGACGCAACGTGTATTGGTCCGATGCTGCCACCAAGCGGATCGAG
GTGGCACGAATGGACGGTACCAGTAGGAGACCTATTATCTGGGAGAACTTGGACGACTTG
CGCAGTTTGGCAGTGGACCCAAGTAACGGTTACATTTACTGGTCACAGTGGGGCCCAGAC
CCTTGTATAATGCGAGCCGAGCTGGACGGTTCAAATCCGGTAGAAATAAATGAAAACCCG
GTGGGTCGACCCAACTCACTCACCATCGATTATGCCGAACAGAGACTTTACTTCGTGGAT
CTTGAGATCAGAACAATCGTTTCAACCAACATGAATGGTAGCGACCTTCGAGAAGTCGTT
CGTGGCAAAAGCAACCAGACTTTCTTCAGTCTAACCTTATTTGGCGATTACATCTACTGG
TCAGACAGCACCAAGAAGTCCATAGAGAGAGCCAACAAAATCACTGGCAACAACAGCCGT
GTCATTGAGAAAGGTTTGAGTGACTTGGAAGACATGCTGGTGTACCATGCATCTCGTCAA
AGCGGCGTTACAGCCTGCTCACATCTCAACGGAGGTTGCCAACATCTGTGTCTGAGTTTG
CACGCCGGGCGACATAAGTGTTCCTGCCCTGCTCACTACACTCTCAACCCCGACAATGTT
ACTTGTGCTGCCCCGAAAAACTTTCTTCTTGTGAGTCGCAACAAATATATTACCCGCATC
ATCTTCGAGTCATCGAACGGTCAAGTTGGAGTTGTGCCCGGTGGCGTTATGGGCAACAGA
GGCTCGTCAAAGAGACAACAGCCCCAACCAGTCACCATCAAACCTGGCCCTGACGCCGTG
CTACCAATCAGAGGCATAAAGGAGGCATTTGCCATTGACTACGACCCGATTGATCAACGA
GTTTATTGGTTAGATTACAAACTCGCTCAAATTTGGAGTTCTCGACCAAACGGAACAGAT
CGTCGAATTCTGTTGGATGGAAATCGCACTGGCCACAAGCCCTACGACATAGCAGTGGAT
CCTTACAGCAGGGCAATGTACTGGACAGATGCAGCTAACAACACGATTAACTTGATCAAG
TTGAACGGCACTGTGGTAGGAACGGTACTGACTGGCCCGATTAAACCTGGTGTATCTGGT
CGTTCATCATTTGAAGCTATGCCAAGAAAGTTGGCCGTCGATCCAATGAGAGGTCGAATG
TACTTTACCAACATTTGTCGGGACGTTAAGTCGTGTCGTCTCAAAATCGTGGTTGCCACA
ATCGACGGTTCAGATCCAATTGTATTGATTCCACGCAGTTTGCGCAACGTCACTGCTCTT
GCGGTCGACAGCAAATCAAAACAACTGTTTTGGGCGGATCGTAATATCATTGAGAAGTCG
ACTCTAGATGGAAAGGAACGTACCGCGTTCATACAAACCGGTCTTCTTGCCCCAGTCGGT
CTCACTGTGTTTGGCGAAAACCTGTACTGGGTCGACGCGGAGGTTTCCTACTTAAACCGT
ATGTTTTTAAAAAGAGAGCAGCAATTTGAAAGTCGGTGTTTTGTTACAACAGATAAACAT
CCGTGTAAGACTGATAATGGAGGATGTTCGCATATTTGCTTGCCCAACGAAGACGGAACA
AGTAAATGTCTTTGCCCAAACCATCTCACCAAGTCTGATGAGTTTGTTTGCATTGAACCA
CCAACTTGTCCTCCAAACCACTTTACGTGCAGTAGCCGAAACGGGTGTGTCCCGATCAAC
TGGCTTTGCGACGGTAAACCCGAATGCGACGATAAATCCGATGAGATGGACTGTCCACCT
TGCGCGCCTGATCAGTTCCAGTGCGGGTCCATAGTGTCCACTGCTGACCACGCCGGCAAC
AACAAACTGCTACTTGACAAGCTGGTTGAAGCCGCTGGCAGTCAGTGTGTGCCGAAGGAC
GCACGGTGCAACGGTCAAATTGACTGCAGAGACAGCAGCGATGAAATTCATTGTGATTGC
CTTGAAAACGAGTTTGAGTGTGCATCGGGTGAATGTATTCCTCTATCGAAGAAATGCAAC
CAGAAGAAAGATTGCAGTGATGGATCCGACGAAATATGCTCATCTCAAGGTACCGCCCAG
TCAGACCCTGACAACACGTATGTGATTGTGATCGGGATTTTCTGTGGATGTGTCTTACTC
ATCGGGATCGTTGTCTTCCTTCGTCATTGTATGGCGCACAACAACTCTTCCTACTCGACT
CCGGTGTTTCTGTGGTCACCGGGTAATCTTAACTCGAACCTCAACGTCAATCTCGAGTTC
CAACAGCACGTGGATCCCGCGGACCCGGCGAGTCATCGCACAAGCGCGAGTGGCAACAGT
GGAGACGCAGGCCACAAGAAAGCATCAAGCAACGGGCCTTCCCATTCAACTACATCATTT
AACGTGTCTATTGTCCACCCCAGAGGCCGGTCTGCGGCCCATTCTAAAGGCATTCCGTTG
CGTGTAATACACCCCGGAGTCAATTCGGCGTTGGCGGCTCCCTGGCCCGGTTATCCCTAT
GCCGTAAGAGGCAACGAAACTGTGGTAGTGGATAGACCTGGAATCCCCGGCGCGTCGAGC
AGTTCAAGCTCCAAAACGGTGGTGAATTGCTTTCCGGAGACCTGGAACCCACCACCCTCC
CCCGCAACAGACAGGTCTGAAGGAAAGAGTGGTGAGTGTTATTACCCTGAAGCTCCTCTA
CCACGCCCTCCCTACCACCACAAGTGCAGGAGCAGTCGAGGACACAGACGCCAACACCAT
CGGAATACTGGACCACCGCCACCAACACCTTGCACCACTGAAGACAACTGCGACGACGCT
GAAGTCTGCAGCAAATCGCGTGCGTATGTCAACACAAGCAAACGTGGGGCTGCAGGAAGT
CGTTCTGGTGGTAGCAGCGGCGGTAGCGTTCCCCATGATCCACCGCCACCCTATTTCCGC
CATCACCACCATCAGTGCTGCTATCATTGCCCGCAACACTACAGCGGTCACCAGCAGAGA
GGATGCCACCACTTCTCGCCTGCTTACCACCATTCGCGCTGTGACGGTATGGAAAACTCG
TCAAGCTCGTCGTCGCGTTGCCAATCATGCGACTGCCAAAACTCAGATACGGCTGACTGT
TCGTGTACTGAGGCATCGCAGCCGTCCTGTCCTCCTTCCTACCACGGCAGGCAGCGATCC
AGTAGGAGGCGCTCGGCGCGCAAATACACGAGCGATTTGAATTACGATTCGGATCCGTTT
GCGCCGCCGCCCACCCCACACAGTCAGTATTTGTCCGAGTGCTGCTATACGCATGGTGAA
ACGACAGAGGCCGACGAACCCTTGGAGGACGACATCCCTGAGCAGGCCAATCGGGAAGTG
GAAGAGATCACATCTCGGATAGACGAAGGGTCGGAATCAGATAGACTGCTTGAAGGCGCT
GCGGAGCCAGACTTTTTTGATCCTAACGAGTTGGATGAAATTGAAGAGGAGGACGAGGAA
GGAAGAACAACGGATGATGCAGACACAGTTTTGCTCGCTCCCAGACAAGGTGGGGATGTT
TCCGCCCGGACGTCCCCATCCATTACGGAGCGGAGCTTTTTTGCTCGTAACCCCCCACCA
TCTCCAGTGTCATCTTCCTAA

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[1-231] 4.2E-83 - T[232-581] 5.2E-73
ProSiteProfiles
LDLR_classB_rpt (IPR000033) - T[1-26] 6.467 - T[27-69] 15.029 - T[70-113] 12.245 - T[114-140] 6.699 - T[156-198] 9.553 - T[319-363] 12.825 - T[364-384] 7.975 - T[418-466] 7.882 - T[467-507] 11.386
SMART
LDLR_classB_rpt (IPR000033) - T[7-49] 4.4E-14 - T[50-93] 2.7E-8 - T[94-136] 9.6E-4 - T[137-178] 2.5 - T[299-341] 1.4E-4 - T[342-386] 8.1E-4 - T[395-446] 110.0 - T[447-487] 3.6E-5 - T[488-528] 2.0
Pfam
LDLR_classB_rpt (IPR000033) - T[27-67] 1.4E-10 - T[70-111] 8.1E-5 - T[319-361] 1.2E-6
SMART
EGF-like_dom (IPR000742) - T[205-243] 0.049 - T[541-578] 22.0
SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[581-618] 1.27E-9 - T[653-680] 9.42E-6 - T[680-712] 2.36E-8
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[582-619] 13.163 - T[620-679] 12.05 - T[679-714] 13.0
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[582-618] 9.1E-12 - T[653-678] 7.8E-6 - T[679-711] 9.2E-10
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[582-620] 1.2E-12 - T[621-678] 0.011 - T[679-715] 1.4E-11
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[583-618] 4.87523E-10 - T[621-678] 1.48303E-7 - T[680-711] 3.98914E-11
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[594-615] 2.2E-18 - T[654-675] 2.2E-18 - T[690-711] 2.2E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LRP1_HUMAN 29.301 % 313 1.45E-87
LRP4_HUMAN 32.736 % 316 1.56E-88
LRP6_HUMAN 39.535 % 559 7.47E-175