- Transcript 'KH2012:KH.C4.24.v1.A...' >
- Transcript 'KH2012:KH.C7.190.v1....' >
- Transcript 'KH2012:KH.C4.584.v1....' >
- Transcript 'Mooccu.CG.ELv1_2.S41...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S39.g01511.01.t
Possible name(s)
LRP4; LRP6
Gene model
Location
S39 [45,740 / 55,014]
Amino acid sequence
Length: 1,226
>Phmamm.CG.MTP2014.S39.g01511.01.p
MNGSHVEDFISVGLESLEGLAVDWIGRNVYWSDAATKRIEVARMDGTSRRPIIWENLDDL
RSLAVDPSNGYIYWSQWGPDPCIMRAELDGSNPVEINENPVGRPNSLTIDYAEQRLYFVD
LEIRTIVSTNMNGSDLREVVRGKSNQTFFSLTLFGDYIYWSDSTKKSIERANKITGNNSR
VIEKGLSDLEDMLVYHASRQSGVTACSHLNGGCQHLCLSLHAGRHKCSCPAHYTLNPDNV
TCAAPKNFLLVSRNKYITRIIFESSNGQVGVVPGGVMGNRGSSKRQQPQPVTIKPGPDAV
LPIRGIKEAFAIDYDPIDQRVYWLDYKLAQIWSSRPNGTDRRILLDGNRTGHKPYDIAVD
PYSRAMYWTDAANNTINLIKLNGTVVGTVLTGPIKPGVSGRSSFEAMPRKLAVDPMRGRM
YFTNICRDVKSCRLKIVVATIDGSDPIVLIPRSLRNVTALAVDSKSKQLFWADRNIIEKS
TLDGKERTAFIQTGLLAPVGLTVFGENLYWVDAEVSYLNRMFLKREQQFESRCFVTTDKH
PCKTDNGGCSHICLPNEDGTSKCLCPNHLTKSDEFVCIEPPTCPPNHFTCSSRNGCVPIN
WLCDGKPECDDKSDEMDCPPCAPDQFQCGSIVSTADHAGNNKLLLDKLVEAAGSQCVPKD
ARCNGQIDCRDSSDEIHCDCLENEFECASGECIPLSKKCNQKKDCSDGSDEICSSQGTAQ
SDPDNTYVIVIGIFCGCVLLIGIVVFLRHCMAHNNSSYSTPVFLWSPGNLNSNLNVNLEF
QQHVDPADPASHRTSASGNSGDAGHKKASSNGPSHSTTSFNVSIVHPRGRSAAHSKGIPL
RVIHPGVNSALAAPWPGYPYAVRGNETVVVDRPGIPGASSSSSSKTVVNCFPETWNPPPS
PATDRSEGKSGECYYPEAPLPRPPYHHKCRSSRGHRRQHHRNTGPPPPTPCTTEDNCDDA
EVCSKSRAYVNTSKRGAAGSRSGGSSGGSVPHDPPPPYFRHHHHQCCYHCPQHYSGHQQR
GCHHFSPAYHHSRCDGMENSSSSSSRCQSCDCQNSDTADCSCTEASQPSCPPSYHGRQRS
SRRRSARKYTSDLNYDSDPFAPPPTPHSQYLSECCYTHGETTEADEPLEDDIPEQANREV
EEITSRIDEGSESDRLLEGAAEPDFFDPNELDEIEEEDEEGRTTDDADTVLLAPRQGGDV
SARTSPSITERSFFARNPPPSPVSSS
Nucleotide sequence
Length: 3,681
>Phmamm.CG.MTP2014.S39.g01511.01.t
ATGAACGGCTCTCACGTGGAAGATTTCATCAGTGTTGGACTTGAATCCCTCGAAGGTTTG
GCTGTTGACTGGATTGGACGCAACGTGTATTGGTCCGATGCTGCCACCAAGCGGATCGAG
GTGGCACGAATGGACGGTACCAGTAGGAGACCTATTATCTGGGAGAACTTGGACGACTTG
CGCAGTTTGGCAGTGGACCCAAGTAACGGTTACATTTACTGGTCACAGTGGGGCCCAGAC
CCTTGTATAATGCGAGCCGAGCTGGACGGTTCAAATCCGGTAGAAATAAATGAAAACCCG
GTGGGTCGACCCAACTCACTCACCATCGATTATGCCGAACAGAGACTTTACTTCGTGGAT
CTTGAGATCAGAACAATCGTTTCAACCAACATGAATGGTAGCGACCTTCGAGAAGTCGTT
CGTGGCAAAAGCAACCAGACTTTCTTCAGTCTAACCTTATTTGGCGATTACATCTACTGG
TCAGACAGCACCAAGAAGTCCATAGAGAGAGCCAACAAAATCACTGGCAACAACAGCCGT
GTCATTGAGAAAGGTTTGAGTGACTTGGAAGACATGCTGGTGTACCATGCATCTCGTCAA
AGCGGCGTTACAGCCTGCTCACATCTCAACGGAGGTTGCCAACATCTGTGTCTGAGTTTG
CACGCCGGGCGACATAAGTGTTCCTGCCCTGCTCACTACACTCTCAACCCCGACAATGTT
ACTTGTGCTGCCCCGAAAAACTTTCTTCTTGTGAGTCGCAACAAATATATTACCCGCATC
ATCTTCGAGTCATCGAACGGTCAAGTTGGAGTTGTGCCCGGTGGCGTTATGGGCAACAGA
GGCTCGTCAAAGAGACAACAGCCCCAACCAGTCACCATCAAACCTGGCCCTGACGCCGTG
CTACCAATCAGAGGCATAAAGGAGGCATTTGCCATTGACTACGACCCGATTGATCAACGA
GTTTATTGGTTAGATTACAAACTCGCTCAAATTTGGAGTTCTCGACCAAACGGAACAGAT
CGTCGAATTCTGTTGGATGGAAATCGCACTGGCCACAAGCCCTACGACATAGCAGTGGAT
CCTTACAGCAGGGCAATGTACTGGACAGATGCAGCTAACAACACGATTAACTTGATCAAG
TTGAACGGCACTGTGGTAGGAACGGTACTGACTGGCCCGATTAAACCTGGTGTATCTGGT
CGTTCATCATTTGAAGCTATGCCAAGAAAGTTGGCCGTCGATCCAATGAGAGGTCGAATG
TACTTTACCAACATTTGTCGGGACGTTAAGTCGTGTCGTCTCAAAATCGTGGTTGCCACA
ATCGACGGTTCAGATCCAATTGTATTGATTCCACGCAGTTTGCGCAACGTCACTGCTCTT
GCGGTCGACAGCAAATCAAAACAACTGTTTTGGGCGGATCGTAATATCATTGAGAAGTCG
ACTCTAGATGGAAAGGAACGTACCGCGTTCATACAAACCGGTCTTCTTGCCCCAGTCGGT
CTCACTGTGTTTGGCGAAAACCTGTACTGGGTCGACGCGGAGGTTTCCTACTTAAACCGT
ATGTTTTTAAAAAGAGAGCAGCAATTTGAAAGTCGGTGTTTTGTTACAACAGATAAACAT
CCGTGTAAGACTGATAATGGAGGATGTTCGCATATTTGCTTGCCCAACGAAGACGGAACA
AGTAAATGTCTTTGCCCAAACCATCTCACCAAGTCTGATGAGTTTGTTTGCATTGAACCA
CCAACTTGTCCTCCAAACCACTTTACGTGCAGTAGCCGAAACGGGTGTGTCCCGATCAAC
TGGCTTTGCGACGGTAAACCCGAATGCGACGATAAATCCGATGAGATGGACTGTCCACCT
TGCGCGCCTGATCAGTTCCAGTGCGGGTCCATAGTGTCCACTGCTGACCACGCCGGCAAC
AACAAACTGCTACTTGACAAGCTGGTTGAAGCCGCTGGCAGTCAGTGTGTGCCGAAGGAC
GCACGGTGCAACGGTCAAATTGACTGCAGAGACAGCAGCGATGAAATTCATTGTGATTGC
CTTGAAAACGAGTTTGAGTGTGCATCGGGTGAATGTATTCCTCTATCGAAGAAATGCAAC
CAGAAGAAAGATTGCAGTGATGGATCCGACGAAATATGCTCATCTCAAGGTACCGCCCAG
TCAGACCCTGACAACACGTATGTGATTGTGATCGGGATTTTCTGTGGATGTGTCTTACTC
ATCGGGATCGTTGTCTTCCTTCGTCATTGTATGGCGCACAACAACTCTTCCTACTCGACT
CCGGTGTTTCTGTGGTCACCGGGTAATCTTAACTCGAACCTCAACGTCAATCTCGAGTTC
CAACAGCACGTGGATCCCGCGGACCCGGCGAGTCATCGCACAAGCGCGAGTGGCAACAGT
GGAGACGCAGGCCACAAGAAAGCATCAAGCAACGGGCCTTCCCATTCAACTACATCATTT
AACGTGTCTATTGTCCACCCCAGAGGCCGGTCTGCGGCCCATTCTAAAGGCATTCCGTTG
CGTGTAATACACCCCGGAGTCAATTCGGCGTTGGCGGCTCCCTGGCCCGGTTATCCCTAT
GCCGTAAGAGGCAACGAAACTGTGGTAGTGGATAGACCTGGAATCCCCGGCGCGTCGAGC
AGTTCAAGCTCCAAAACGGTGGTGAATTGCTTTCCGGAGACCTGGAACCCACCACCCTCC
CCCGCAACAGACAGGTCTGAAGGAAAGAGTGGTGAGTGTTATTACCCTGAAGCTCCTCTA
CCACGCCCTCCCTACCACCACAAGTGCAGGAGCAGTCGAGGACACAGACGCCAACACCAT
CGGAATACTGGACCACCGCCACCAACACCTTGCACCACTGAAGACAACTGCGACGACGCT
GAAGTCTGCAGCAAATCGCGTGCGTATGTCAACACAAGCAAACGTGGGGCTGCAGGAAGT
CGTTCTGGTGGTAGCAGCGGCGGTAGCGTTCCCCATGATCCACCGCCACCCTATTTCCGC
CATCACCACCATCAGTGCTGCTATCATTGCCCGCAACACTACAGCGGTCACCAGCAGAGA
GGATGCCACCACTTCTCGCCTGCTTACCACCATTCGCGCTGTGACGGTATGGAAAACTCG
TCAAGCTCGTCGTCGCGTTGCCAATCATGCGACTGCCAAAACTCAGATACGGCTGACTGT
TCGTGTACTGAGGCATCGCAGCCGTCCTGTCCTCCTTCCTACCACGGCAGGCAGCGATCC
AGTAGGAGGCGCTCGGCGCGCAAATACACGAGCGATTTGAATTACGATTCGGATCCGTTT
GCGCCGCCGCCCACCCCACACAGTCAGTATTTGTCCGAGTGCTGCTATACGCATGGTGAA
ACGACAGAGGCCGACGAACCCTTGGAGGACGACATCCCTGAGCAGGCCAATCGGGAAGTG
GAAGAGATCACATCTCGGATAGACGAAGGGTCGGAATCAGATAGACTGCTTGAAGGCGCT
GCGGAGCCAGACTTTTTTGATCCTAACGAGTTGGATGAAATTGAAGAGGAGGACGAGGAA
GGAAGAACAACGGATGATGCAGACACAGTTTTGCTCGCTCCCAGACAAGGTGGGGATGTT
TCCGCCCGGACGTCCCCATCCATTACGGAGCGGAGCTTTTTTGCTCGTAACCCCCCACCA
TCTCCAGTGTCATCTTCCTAA
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[1-231] 4.2E-83 - T[232-581] 5.2E-73 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[1-26] 6.467 - T[27-69] 15.029 - T[70-113] 12.245 - T[114-140] 6.699 - T[156-198] 9.553 - T[319-363] 12.825 - T[364-384] 7.975 - T[418-466] 7.882 - T[467-507] 11.386 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[7-49] 4.4E-14 - T[50-93] 2.7E-8 - T[94-136] 9.6E-4 - T[137-178] 2.5 - T[299-341] 1.4E-4 - T[342-386] 8.1E-4 - T[395-446] 110.0 - T[447-487] 3.6E-5 - T[488-528] 2.0 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[27-67] 1.4E-10 - T[70-111] 8.1E-5 - T[319-361] 1.2E-6 |
| SMART |
EGF-like_dom (IPR000742) - T[205-243] 0.049 - T[541-578] 22.0 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[581-618] 1.27E-9 - T[653-680] 9.42E-6 - T[680-712] 2.36E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[582-619] 13.163 - T[620-679] 12.05 - T[679-714] 13.0 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[582-618] 9.1E-12 - T[653-678] 7.8E-6 - T[679-711] 9.2E-10 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[582-620] 1.2E-12 - T[621-678] 0.011 - T[679-715] 1.4E-11 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[583-618] 4.87523E-10 - T[621-678] 1.48303E-7 - T[680-711] 3.98914E-11 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[594-615] 2.2E-18 - T[654-675] 2.2E-18 - T[690-711] 2.2E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 29.301 % | 313 | 1.45E-87 |
| LRP4_HUMAN | 32.736 % | 316 | 1.56E-88 |
| LRP6_HUMAN | 39.535 % | 559 | 7.47E-175 |