- Transcript 'KH2012:KH.C8.506.v1....' >
- Transcript 'KH2012:KH.C1.1192.v1...' >
- Transcript 'KH2012:KH.C2.257.v2....' >
- Transcript 'KH2012:KH.C6.198.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S404.g08345.01.t
Possible name(s)
LINGO2; LRFN5; LRRC4B
Gene model
Location
S404 [120,852 / 125,041]
Amino acid sequence
Length: 844
>Phmamm.CG.MTP2014.S404.g08345.01.p
MAYFVTLVWIVLCLQCTITGAFKCHQFCQCEQLLPTSQHRVVCNGVDNEPTTNISLVNVT
EEKSCEDVLQVETLNFSFPIRHLEISCFHVSSQQKLDMFTTLHSLTITKTNLTSFSLKLV
QSNTNLQKLNLSSNMLKTFQAPYGAVLGNLQTLDLSDNALTNLDVAKSTLPQIVFLNLQN
NQLRTTVPLTLLTSLENIDISGNSFSTSLNLSTLTSIHTFTAKKVHSIYKFNVDTSCSKC
PMLPINAETVDLQNNALLQVPTCTGLLAGLFNFTQLQLDYNQISMLSENTFSGECFFYLS
SLYLSHNRLVKIDSSVTAVLSNIRFLDVSYNYLQHIDPKILQTFNKFVGNGSATIDNEVP
TIVINNNSWSCDCFLTTLQNWVVQTPQAKGKFVCQQPSQLYSRHLEDLVASDLVCHNASI
LQPHNVTAAEFQSGTLVCSVSGSPRPVVHWITPKKENISFASIAQSSNQQDCYSLSEFGD
MLTVHNVRLFKTGVYRCVADNNISTTEATVALSVLLGQTSTIILLSVACVAFMIAVVVNS
INMCMYICEHVERKRQYKKALQAQKEEEKINPPIKYRSKSLDESMASLNANRHYSRYDFT
CQQMFLDTVVKGAHTVKKTLYDARHSEFSNNMWGYAANLRDRLHIEMPSGVQLPSISMPS
ISMPSISMPTMPNIPTMQDINTNIEKLGSSVMHRSHNLATSVGSVFTLRRWMWQTQNNSS
DNESRDSDDNLLGDTGVTRVRVDVHPRHHRSYLSGSEPSVPNTEQPSSSKDDQAGPSYIK
VYRPTLQRSKSFTKNVRFDSDNRIEQQLPVERPLTSAIFSVHPNLNTISSTVDAVPLHSY
ETSV
Nucleotide sequence
Length: 3,324
>Phmamm.CG.MTP2014.S404.g08345.01.t
CAAATGTTACCGCGATTCCGGGTTTTAGAGGCGCTCAAATGTTATTGTGCTGAAATTTGT
TACAGCTTTTGCTAATTGTGGATTGAAAAATGTTGTTTCAAATGACTTTTCATTTTTTTA
AAGGTTTTTGGTGAAGAGGATGAAAATTTAAAGAAAAAATATCACTAATGCTACTAAAAG
TAAAAATATGGCATATTTTGTCACTTTAGTCTGGATAGTTCTGTGTCTACAATGTACAAT
CACAGGTGCATTCAAGTGCCATCAATTTTGCCAGTGTGAGCAGCTTCTTCCAACCTCACA
ACACAGGGTGGTTTGTAATGGTGTGGATAATGAACCCACAACAAACATATCTTTGGTTAA
TGTAACTGAAGAGAAAAGTTGTGAAGATGTGCTGCAGGTTGAAACACTAAACTTCAGTTT
TCCAATTAGGCACCTTGAAATTTCCTGTTTCCATGTTTCATCTCAACAGAAGCTTGATAT
GTTTACCACTTTGCATTCTCTCACTATTACGAAGACCAATTTGACTTCATTTTCTTTGAA
ACTTGTACAATCAAACACAAACCTACAAAAGCTTAATCTGTCCTCTAATATGTTGAAGAC
ATTTCAAGCACCTTATGGAGCGGTATTGGGAAATCTTCAAACCCTTGATCTTTCTGACAA
TGCACTTACAAACCTTGATGTAGCAAAAAGTACTTTGCCTCAGATTGTATTTTTAAATCT
GCAAAACAATCAGCTTAGAACCACTGTACCCTTGACTCTTCTAACGTCTCTGGAAAACAT
AGATATTTCTGGAAACTCGTTCAGTACCAGTTTGAACCTCTCGACGTTGACATCCATACA
CACATTTACAGCAAAGAAAGTCCATTCAATCTATAAGTTTAATGTTGACACCTCTTGCAG
CAAATGTCCTATGCTGCCAATAAATGCTGAAACCGTCGATCTTCAAAATAATGCTTTGTT
ACAAGTTCCAACATGCACAGGCCTGCTGGCAGGCTTGTTCAATTTTACACAGTTGCAGCT
GGACTACAACCAAATATCAATGCTGTCTGAGAATACCTTTTCTGGTGAATGCTTTTTTTA
TTTAAGTTCCTTATATTTATCTCACAACAGGCTTGTGAAGATTGATAGTTCAGTAACAGC
AGTTTTATCCAACATCCGTTTTTTGGATGTGTCTTACAATTACCTGCAGCATATTGACCC
GAAGATTTTGCAGACTTTCAACAAATTTGTTGGTAATGGCTCTGCAACAATTGACAATGA
AGTTCCAACCATTGTGATCAACAACAATTCTTGGTCATGTGACTGCTTTCTTACCACTTT
ACAAAACTGGGTTGTGCAGACCCCACAAGCAAAAGGAAAATTTGTTTGTCAGCAACCTAG
TCAACTCTATTCCAGGCATCTTGAAGATCTTGTTGCATCTGATTTAGTTTGCCATAATGC
CTCAATATTACAACCACACAATGTTACAGCTGCTGAATTTCAAAGTGGAACTTTAGTTTG
TTCTGTAAGTGGATCTCCAAGGCCCGTGGTTCACTGGATTACACCCAAGAAGGAAAACAT
TTCTTTCGCCAGCATTGCACAAAGCAGTAATCAACAAGATTGCTATTCCCTTTCTGAATT
TGGAGATATGCTTACTGTCCATAATGTTAGATTGTTCAAAACAGGGGTCTACAGATGTGT
AGCTGATAACAACATAAGCACAACTGAGGCAACAGTGGCATTGAGTGTTCTGCTTGGTCA
AACAAGTACAATCATTCTGTTATCAGTAGCATGTGTTGCTTTCATGATTGCAGTGGTGGT
GAATTCCATCAATATGTGCATGTACATATGTGAACATGTTGAGAGGAAGCGTCAGTACAA
AAAAGCTTTGCAAGCCCAAAAAGAAGAAGAGAAGATTAATCCACCGATTAAATACCGTTC
CAAGTCTCTTGATGAATCAATGGCCTCACTAAATGCAAACAGGCATTACAGTAGATATGA
TTTCACATGTCAGCAAATGTTTTTGGACACTGTCGTAAAAGGTGCACATACTGTCAAAAA
GACACTGTATGATGCAAGGCATTCTGAGTTCTCCAACAACATGTGGGGATATGCTGCTAA
TCTCAGGGACCGTCTCCACATTGAAATGCCGAGTGGTGTACAACTTCCCAGTATTTCTAT
GCCAAGTATCTCCATGCCAAGCATTTCTATGCCGACCATGCCCAACATACCCACCATGCA
GGACATCAACACAAATATAGAAAAGCTGGGCTCTAGTGTCATGCATAGAAGTCACAACTT
GGCCACATCAGTTGGGTCTGTTTTTACTCTCAGACGATGGATGTGGCAAACACAAAACAA
CTCAAGCGACAATGAAAGTAGAGATTCCGATGATAATCTTCTTGGGGACACTGGTGTTAC
TCGAGTAAGAGTGGATGTTCACCCGAGACATCATCGAAGCTACCTCAGTGGATCAGAACC
ATCAGTTCCCAACACTGAACAACCTTCAAGTAGCAAAGATGACCAGGCTGGCCCAAGTTA
TATTAAAGTCTACAGACCAACTTTGCAAAGATCAAAATCTTTTACAAAAAATGTCCGATT
TGATTCTGACAACAGAATCGAGCAGCAACTCCCAGTAGAGCGACCATTGACAAGTGCAAT
CTTTAGTGTCCATCCAAATTTAAACACCATTAGCTCAACAGTTGATGCAGTACCATTGCA
TTCATACGAAACCTCTGTTTAACAATGTGTACGAACTGCAGGTTGTAAATTAACCAGGGG
GGTTTCTTCAAGCATTTGTCTGGTAGAAAGGGTTTAAATCAGGGGTGGCAACCTTTGTTA
CTGTAGGGCCAATTATAAATGTCAAAATTGGATCACGGGCCGCACACATGCATAACAGAA
AGTGATTTTGCTTTGTTTAAGTATAATTCATATTTGATTCTAGCCACATTTTGCTACATC
GCAGAAAACTAGCATCAGGCGCATTAATCAGCTTAAAAATGTGTAATAATTGGACTTGTT
TGCCAATACTTTTGAAATCGAAGCGTCTCTGCGGGCCGCACAACCTTTAATGAAGGGCCG
CAGGTTTCCCACCCCTGGTTTAATTGAACATGTTATTTAAGGTGCATGACCAAGTAGTTG
ATGTTATTTCCATTCACCAAAAGGATGAAATAAGCTTTAGTTTCCATTGTCCTGTTTTCT
GTGAAAGTGGTGCTTTTTTGCATGCTTTTACAATCTCTTTTGATCTACATCTTGCACCTA
GCTTATATTATAGCTATACAATCCCATGTATTTTCATCAGTGATGATTGTCTATAGTTGT
TGTGAAAATATTTTGTGCAATAGT
| Gene3D |
LRR_dom_sf (IPR032675) - T[15-237] 3.4E-19 - T[238-417] 1.0E-25 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[125-146] 6.156 - T[149-170] 7.596 - T[172-193] 6.272 - T[194-215] 6.156 - T[246-267] 5.178 - T[272-293] 5.687 - T[298-319] 6.834 - T[322-343] 6.457 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[147-168] 13.0 - T[170-194] 53.0 - T[270-293] 1.8 - T[320-343] 7.1 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[367-416] 4.0E-4 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[397-513] 10.117 |
| Gene3D |
Ig-like_fold (IPR013783) - T[418-520] 2.7E-15 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[421-515] 2.61E-14 |
| SMART |
Ig_sub (IPR003599) - T[423-515] 2.2E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIGO2_HUMAN | 24.419 % | 84.3 | 1.06E-16 |