- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S404.g08345.02.t
Possible name(s)
LINGO2; LRFN5; LRRC4B
Gene model
Location
S404 [121,441 / 124,439]
Amino acid sequence
Length: 661
>Phmamm.CG.MTP2014.S404.g08345.02.p
MLKTFQAPYGAVLGNLQTLDLSDNALTNLDVAKSTLPQIVFLNLQNNQLRTTVPLTLLTS
LENIDISGNSFSTSLNLSTLTSIHTFTAKKVHSIYKFNVDTSCSKCPMLPINAETVDLQN
NALLQVPTCTGLLAGLFNFTQLQLDYNQISMLSENTFSGECFFYLSSLYLSHNRLVKIDS
SVTAVLSNIRFLDVSYNYLQHIDPKILQTFNKFVGNGSATIDNEVPTIVINNNSWSCDCF
LTTLQNWVVQTPQAKGKFVCQQPSQLYSRHLEDLVASDLVCHNASILQPHNVTAAEFQSG
TLVCSVSGSPRPVVHWITPKKENISFASIAQSSNQQDCYSLSEFGDMLTVHNVRLFKTGV
YRYICEHVERKRQYKKALQAQKEEEKINPPIKYRSKSLDESMASLNANRHYSRYDFTCQQ
MFLDTVVKGAHTVKKTLYDARHSEFSNNMWGYAANLRDRLHIEMPSGVQLPSISMPSISM
PSISMPTMPNIPTMQDINTNIEKLGSSVMHRSHNLATSVGSVFTLRRWMWQTQNNSSDNE
SRDSDDNLLGDTGVTRVRVDVHPRHHRSYLSGSEPSVPNTEQPSSSKDDQAGPSYIKVYR
PTLQRSKSFTKNVRFDSDNRIEQQLPVERPLTSAIFSVHPNLNTISSTVDAVPLHSYETS
V
Nucleotide sequence
Length: 1,986
>Phmamm.CG.MTP2014.S404.g08345.02.t
ATGTTGAAGACATTTCAAGCACCTTATGGAGCGGTATTGGGAAATCTTCAAACCCTTGAT
CTTTCTGACAATGCACTTACAAACCTTGATGTAGCAAAAAGTACTTTGCCTCAGATTGTA
TTTTTAAATCTGCAAAACAATCAGCTTAGAACCACTGTACCCTTGACTCTTCTAACGTCT
CTGGAAAACATAGATATTTCTGGAAACTCGTTCAGTACCAGTTTGAACCTCTCGACGTTG
ACATCCATACACACATTTACAGCAAAGAAAGTCCATTCAATCTATAAGTTTAATGTTGAC
ACCTCTTGCAGCAAATGTCCTATGCTGCCAATAAATGCTGAAACCGTCGATCTTCAAAAT
AATGCTTTGTTACAAGTTCCAACATGCACAGGCCTGCTGGCAGGCTTGTTCAATTTTACA
CAGTTGCAGCTGGACTACAACCAAATATCAATGCTGTCTGAGAATACCTTTTCTGGTGAA
TGCTTTTTTTATTTAAGTTCCTTATATTTATCTCACAACAGGCTTGTGAAGATTGATAGT
TCAGTAACAGCAGTTTTATCCAACATCCGTTTTTTGGATGTGTCTTACAATTACCTGCAG
CATATTGACCCGAAGATTTTGCAGACTTTCAACAAATTTGTTGGTAATGGCTCTGCAACA
ATTGACAATGAAGTTCCAACCATTGTGATCAACAACAATTCTTGGTCATGTGACTGCTTT
CTTACCACTTTACAAAACTGGGTTGTGCAGACCCCACAAGCAAAAGGAAAATTTGTTTGT
CAGCAACCTAGTCAACTCTATTCCAGGCATCTTGAAGATCTTGTTGCATCTGATTTAGTT
TGCCATAATGCCTCAATATTACAACCACACAATGTTACAGCTGCTGAATTTCAAAGTGGA
ACTTTAGTTTGTTCTGTAAGTGGATCTCCAAGGCCCGTGGTTCACTGGATTACACCCAAG
AAGGAAAACATTTCTTTCGCCAGCATTGCACAAAGCAGTAATCAACAAGATTGCTATTCC
CTTTCTGAATTTGGAGATATGCTTACTGTCCATAATGTTAGATTGTTCAAAACAGGGGTC
TACAGGTACATATGTGAACATGTTGAGAGGAAGCGTCAGTACAAAAAAGCTTTGCAAGCC
CAAAAAGAAGAAGAGAAGATTAATCCACCGATTAAATACCGTTCCAAGTCTCTTGATGAA
TCAATGGCCTCACTAAATGCAAACAGGCATTACAGTAGATATGATTTCACATGTCAGCAA
ATGTTTTTGGACACTGTCGTAAAAGGTGCACATACTGTCAAAAAGACACTGTATGATGCA
AGGCATTCTGAGTTCTCCAACAACATGTGGGGATATGCTGCTAATCTCAGGGACCGTCTC
CACATTGAAATGCCGAGTGGTGTACAACTTCCCAGTATTTCTATGCCAAGTATCTCCATG
CCAAGCATTTCTATGCCGACCATGCCCAACATACCCACCATGCAGGACATCAACACAAAT
ATAGAAAAGCTGGGCTCTAGTGTCATGCATAGAAGTCACAACTTGGCCACATCAGTTGGG
TCTGTTTTTACTCTCAGACGATGGATGTGGCAAACACAAAACAACTCAAGCGACAATGAA
AGTAGAGATTCCGATGATAATCTTCTTGGGGACACTGGTGTTACTCGAGTAAGAGTGGAT
GTTCACCCGAGACATCATCGAAGCTACCTCAGTGGATCAGAACCATCAGTTCCCAACACT
GAACAACCTTCAAGTAGCAAAGATGACCAGGCTGGCCCAAGTTATATTAAAGTCTACAGA
CCAACTTTGCAAAGATCAAAATCTTTTACAAAAAATGTCCGATTTGATTCTGACAACAGA
ATCGAGCAGCAACTCCCAGTAGAGCGACCATTGACAAGTGCAATCTTTAGTGTCCATCCA
AATTTAAACACCATTAGCTCAACAGTTGATGCAGTACCATTGCATTCATACGAAACCTCT
GTTTAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[3-87] 7.3E-11 - T[100-283] 5.8E-26 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[13-34] 13.0 - T[36-60] 53.0 - T[136-159] 1.8 - T[186-209] 7.1 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[15-36] 7.596 - T[38-59] 6.272 - T[60-81] 6.156 - T[112-133] 5.178 - T[138-159] 5.687 - T[164-185] 6.834 - T[188-209] 6.457 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[233-282] 4.0E-4 |
| Gene3D |
Ig-like_fold (IPR013783) - T[284-387] 7.6E-9 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[287-362] 2.21E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|