Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S407.g08369.01.t

Possible name(s)

CDCP2; PCOLCE; PCOLCE2

Gene model

Phmamm.CG.MTP2014.S407.g08369

Location

S407 [260 / 3,657]

Sequences

Amino acid sequence

Length: 452

>Phmamm.CG.MTP2014.S407.g08369.01.p
TCGSLLSGTSGTFETPNYPGDYPEDTTCKWVIEVPTGSIVELKFSTFQTESLEKNCEESD
LVQIFDGNSESSPVLHSRLCGSNIPRDFVSTGNSMTVVFKSTEDSFGEKGFAATYSAKSG
SEKQCVINECGGQIELASSCKLVSPSYPSGYAANQNCSWTIIAPEGANVQVEFKELMLET
LSSKCSKNNVTLYDGTTTHDKIIYEPVCDMEDNSLDGEVPVLFESTGSKMLIQFRTSQSS
TSTTGFFADINILLPSTISSAAVTSASTVSPTTSSSSPTTTTSTTKESSTTTTTTTTTKE
SSTTTLYKKISSMKPSANPTTETVSVASSPSEETVTSQASVKTPKPATERSDAKTTSTDK
ADVPIASNPAAVSGLVIGGIIGLVIIVFAILLIVAFVHWRRQNHRFNIRLREEDAQSDVN
TLISNTDSRETVYKGKKYGKIVRISTAEEFPL

Nucleotide sequence

Length: 1,359

>Phmamm.CG.MTP2014.S407.g08369.01.t
ACCTGCGGCTCTCTTCTTTCGGGAACTTCAGGAACTTTTGAAACTCCAAATTACCCTGGA
GATTACCCTGAAGATACCACATGCAAATGGGTAATTGAGGTTCCAACAGGCTCCATTGTT
GAGCTAAAATTTTCAACTTTTCAAACCGAGTCATTGGAGAAAAACTGTGAAGAATCAGAT
TTGGTTCAAATATTTGATGGCAACAGTGAATCCAGTCCTGTTCTACACTCCAGACTATGT
GGAAGTAATATTCCAAGGGACTTTGTAAGCACTGGGAATTCCATGACAGTTGTTTTCAAG
TCAACAGAGGATTCATTTGGTGAAAAGGGTTTTGCTGCTACATATAGTGCTAAATCAGGC
AGTGAAAAGCAATGTGTAATAAACGAATGTGGTGGACAAATCGAGCTGGCCAGTTCTTGC
AAATTAGTGTCCCCTAGCTACCCAAGTGGTTATGCTGCAAACCAAAACTGCTCTTGGACC
ATTATTGCTCCAGAAGGGGCAAATGTTCAAGTTGAGTTTAAAGAATTAATGCTTGAAACC
CTCAGTTCCAAATGCTCCAAAAACAATGTAACCCTGTATGATGGAACCACCACGCATGAC
AAAATCATATATGAACCTGTTTGTGATATGGAGGACAACAGTTTGGATGGGGAAGTGCCA
GTTTTGTTTGAAAGCACAGGTTCCAAGATGTTGATTCAATTTCGTACATCTCAAAGTTCC
ACATCTACAACTGGATTCTTTGCTGACATAAATATACTGCTGCCAAGCACTATATCCTCT
GCTGCAGTCACTTCTGCCAGCACTGTGTCACCAACTACATCTTCATCCAGTCCTACCACT
ACCACCAGTACCACAAAAGAGTCATCCACCACCACCACCACCACCACCACCACAAAAGAG
TCATCCACCACCACTTTGTACAAAAAGATCAGTTCAATGAAGCCTTCAGCGAACCCCACA
ACCGAAACAGTTTCAGTTGCTTCATCACCATCAGAGGAAACTGTTACCAGCCAAGCCTCT
GTGAAAACACCAAAACCAGCAACAGAGCGTTCAGATGCCAAAACCACATCGACAGATAAA
GCAGATGTCCCAATTGCAAGCAACCCTGCTGCAGTATCTGGATTGGTGATTGGTGGTATT
ATTGGTCTTGTCATCATTGTCTTTGCAATCTTGCTCATAGTGGCCTTTGTTCATTGGAGA
AGGCAGAACCATAGATTTAACATCAGACTTCGTGAAGAAGATGCACAAAGTGACGTCAAC
ACGCTTATTTCCAACACTGACTCACGCGAAACTGTCTACAAAGGAAAAAAGTATGGCAAA
ATTGTAAGGATTTCAACTGCTGAAGAGTTCCCACTATAA

InterProScan

Gene3D	Sperma_CUB_dom_sf (IPR035914) - T[2-121] 2.8E-33 - T[124-253] 6.6E-23
ProSiteProfiles	CUB_dom (IPR000859) - T[2-118] 23.591 - T[130-253] 19.593
Pfam	CUB_dom (IPR000859) - T[2-115] 3.3E-25 - T[130-247] 3.5E-16
SMART	CUB_dom (IPR000859) - T[2-118] 2.2E-34 - T[130-253] 9.2E-19
SUPERFAMILY	Sperma_CUB_dom_sf (IPR035914) - T[2-117] 3.01E-30 - T[129-248] 3.79E-20
CDD	CUB_dom (IPR000859) - T[2-117] 7.41799E-35 - T[130-235] 5.1638E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CDCP2_HUMAN	31.557 %	112	5.86E-27
PCOC1_HUMAN	32.157 %	111	1.26E-26
PCOC2_HUMAN	28.669 %	108	6.05E-26