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TRANSCRIPT CARD

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  1. EST 'AHC0AAA226YJ02_RM1' > 
  2. Transcript 'Harore.CG.MTP2014.S5...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S40.g01557.02.t

Possible name(s)

COPA; COPB2; PAFAH1B1

Gene model

Phmamm.CG.MTP2014.S40.g01557

Location

S40 [201,701 / 210,337]

Sequences

Amino acid sequence

Length: 565

>Phmamm.CG.MTP2014.S40.g01557.02.p
MIKLGREEPAMSMDANGKIIWAKHSEIQQANLKALTDMDVKDGERLQLQVKDMGSCEVYP
QNLNHNANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWANDSTEYAVRESNSTVKLF
KNFKERKSFKPDFGAEGIYGGHFLGVRTSQGLAFYDWESLDLIRRIEINPKNVFWSDNGD
LVCITTEESFYILKFNQSKLEESKENPDLVTEDGVTDVFSEDIGEIEEIVRTGLWVGDCF
IYTNSVNRLNYYVGGEIVTIAHLDRTLYLLGYIPNDNRLYLGDKELNVVSYSLLLSVLEY
QTAVMRQDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDPEHKFELALNLGDL
KIAYDLAKEAQAEQKWKQLAELATSKCEFGLAQECLRQAQDFGGLLLLATAAGNSNMVKS
LAENAETGGKNNVAFLSYFITGQTQKCLDLLISSNRLPEAAFFARTYLPSEVSRVVQLWK
EGLSKSNKKAGDALADPSQYENLFPGMADSLVAQQYLAATEKQRPAAHYPLTPSNDDRDI
LAESEGFEGTSQDVPVKVILCEDSV

Nucleotide sequence

Length: 2,313

>Phmamm.CG.MTP2014.S40.g01557.02.t
TAGGGATCCAACAACATTGCACTTGGATATGATGAGGGAAGTATAATGATCAAACTTGGC
CGGGAAGAGCCAGCAATGTCCATGGATGCCAATGGCAAAATTATTTGGGCAAAACATTCG
GAAATACAACAGGCTAATCTGAAGGCACTTACAGATATGGATGTAAAGGATGGTGAAAGG
TTGCAACTTCAAGTTAAAGATATGGGCAGTTGTGAAGTTTATCCACAAAACCTGAACCAC
AATGCTAACGGAAGATTTGTTGTTGTGTGTGGAGACGGAGAATACATCATTTACACTGCG
ATGGCATTGAGAAACAAAGCATTCGGATCAGCCTTGGAATTTACCTGGGCAAATGATTCA
ACGGAGTACGCTGTTCGAGAGAGCAATTCTACTGTGAAGTTGTTTAAGAATTTCAAGGAA
AGAAAATCTTTCAAGCCTGACTTTGGAGCTGAGGGAATTTATGGAGGCCACTTTCTTGGT
GTTCGTACCTCGCAAGGACTGGCATTCTATGACTGGGAAAGCTTGGATTTGATCCGAAGA
ATTGAAATTAACCCCAAAAATGTTTTTTGGTCTGACAATGGAGACCTGGTTTGCATCACA
ACCGAAGAGTCATTTTACATTCTCAAGTTCAACCAAAGCAAACTGGAGGAGTCGAAGGAG
AATCCTGATCTAGTTACTGAGGACGGAGTGACTGATGTTTTCAGCGAGGACATTGGTGAA
ATTGAAGAAATAGTTCGAACTGGCCTCTGGGTGGGAGACTGCTTCATTTATACAAACTCG
GTAAACAGGCTCAACTACTATGTTGGTGGTGAAATTGTCACCATTGCACATCTCGACAGA
ACATTGTATCTGCTCGGATATATTCCAAACGACAATCGCTTGTATCTTGGTGACAAAGAA
CTGAATGTGGTGAGTTACTCTCTTCTGCTATCTGTACTTGAATACCAAACTGCTGTCATG
CGTCAAGATTTCGAGACAGCTGATAAAGTATTGCCATCGATTCCCAAAGAGCAGAGAACA
AGAGTTGCACACTTCCTTGAAAAACAGGGCTTCAAACCTCAAGCTATGGCTGTTACCAGC
GACCCTGAACATAAGTTTGAGCTTGCTCTTAATCTGGGTGACCTTAAAATTGCCTATGAC
CTTGCCAAAGAAGCACAGGCTGAACAGAAATGGAAGCAACTCGCCGAGCTCGCCACAAGC
AAATGTGAGTTTGGATTGGCCCAGGAATGTTTGAGACAAGCTCAAGACTTCGGTGGTCTC
CTGCTTCTTGCCACTGCAGCAGGCAACAGCAATATGGTCAAATCCCTTGCTGAGAATGCT
GAAACCGGAGGCAAGAACAACGTTGCTTTCCTGAGTTATTTCATCACTGGACAAACCCAG
AAATGTCTCGATCTTCTCATCAGCTCAAATCGACTGCCTGAAGCTGCATTTTTCGCTCGA
ACTTATTTGCCCAGTGAAGTGTCCAGAGTTGTCCAGCTTTGGAAAGAAGGTTTATCAAAG
AGCAACAAAAAAGCTGGTGATGCATTGGCTGATCCTTCCCAGTATGAAAATCTATTTCCT
GGCATGGCTGACAGTCTTGTTGCACAACAATACTTGGCTGCTACTGAAAAACAAAGACCA
GCAGCACATTACCCTCTTACACCGAGTAACGATGATCGAGATATTTTAGCCGAGTCTGAA
GGTTTTGAAGGAACTTCACAAGATGTGCCGGTTAAGGTAATATTGTGTGAGGACTCTGTG
TGATACGTGCATCAAGCAATCATTTATTAAACATATTAAATTTAAGTTCAAAATTCTGTT
TCCAAATTTGTTTATTCTTTTGTTCATATATACAGCAGGGGTTCCCAACCTTTTTATGAT
CTCGTACCACTTGGACACTCTTTACTGCCACGCGTACCACTTCTAGCAGAACAACTTATT
TGTTTAAATCATATTTTTTTCAAGAGAATAATATTGGCCTACTAAAATAACACTAAAGAA
CCACAACTAATTTGTTTTGTTTACTGTTCACCAATTGGTCAACAAAACCAGATAAATAAA
TGATAAAGTTGTGAATCTAGGTTTTTGTGAAAAACCGGATGCTACTAACGTACCACCTGA
AAAACCTTCACGTACCACAGGTTGGGAACTCCTGATATACAGATATGGCATGTTTTTGTT
TAAATCGATGTTTTCCAAAACTTGTTGTACAGCCCCCTTGTCTCATAACAGCTTACTAAT
TTCAAAATACTCTTGCCCCCTAAAGTAAAAAAATATTCGTTTTACTATCCAACGGCCTTT
TAATATTGCAAATTTGCTTTGAGAACCACTGCT

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-122] 1.3E-8
Pfam
Coatomer_WD-assoc_reg (IPR006692) - T[24-468] 8.0E-169
SUPERFAMILY
Quino_amine_DH_bsu (IPR011044) - T[42-291] 1.88E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COPB2_HUMAN 72.495 % 860 0