- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Boleac.CG.SB_v3.S395...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S4125.g18237.01.t
Possible name(s)
ADGRB2; ADGRB3; HMCN1
Gene model
Location
S4125 [12 / 5,606]
Amino acid sequence
Length: 460
>Phmamm.CG.MTP2014.S4125.g18237.01.p
MRNVALLIARGETGVISVIAPKEQEVNLQLLAVDLNALDQKRTPGLAMGHVVQLIASTEI
GMIGPSVLTAECGGNCESSVESRPCNIGCCPVNCLWDDWSAYGECSETCGGGTQVRTRGN
TPASCGGSDCSGLSEESKECNTQCCPVDCQYGDWNPWSECTLACGGGTQDRFREIVSEAI
CGGECSSSVESQSCNPECCPVDCVWSDWTEWDDCSATCGDGTQSRTRFVVSASDCGGTDC
TGPDEQTQTCNDGCCPVDCVVSDWGEWSACELGCNEAETSTRMRSIISADECGGQECPVE
LSENRGCNTVCLNGGLYDDMTCQCPEGWTGECCEEDVDECLERTAECNRLAYCENTVGSY
SCICISGYTGDGFDCTDVNECDENHNCPENTKCVDHIGEYSCVCEDGFEGSNANCQDIDE
CARGVHNCHSNSLCENTDGGFTCTCNAGYSGNGTHCIVAP
Nucleotide sequence
Length: 1,383
>Phmamm.CG.MTP2014.S4125.g18237.01.t
ATGCGCAATGTTGCCCTGTTGATTGCACGTGGGGAAACTGGGGTGATTTCGGTGATTGCT
CCGAAAGAACAAGAAGTAAATCTGCAGCTTCTTGCGGTGGATCTGAATGCTCTGGATCAG
AAAAGGACACCAGGTCTTGCGATGGGCCATGTTGTCCAGTTGATTGCCAGTACAGAGATT
GGAATGATTGGTCCATCTGTTCTCACTGCAGAGTGCGGAGGAAACTGTGAATCTTCGGTG
GAAAGTCGACCTTGCAATATAGGGTGTTGCCCTGTGAATTGCTTGTGGGATGACTGGTCA
GCATACGGGGAATGCAGCGAAACATGCGGTGGAGGAACACAGGTCAGAACTAGAGGTAAC
ACACCTGCATCTTGTGGTGGTTCTGACTGTTCTGGTTTAAGTGAAGAGTCAAAGGAATGC
AATACCCAATGCTGTCCTGTGGATTGCCAATACGGAGACTGGAACCCATGGTCTGAATGC
ACATTGGCCTGTGGTGGTGGAACACAAGACAGATTCAGAGAGATTGTGTCTGAAGCAATA
TGCGGCGGAGAATGTTCATCGTCTGTTGAAAGCCAAAGTTGTAACCCAGAATGCTGCCCT
GTCGACTGTGTATGGAGTGATTGGACAGAATGGGATGATTGCAGTGCGACATGTGGAGAT
GGTACGCAGAGCAGGACCAGATTTGTCGTTTCAGCAAGTGATTGTGGTGGTACGGATTGC
ACAGGTCCTGACGAACAAACTCAAACATGTAACGATGGATGCTGCCCAGTCGATTGCGTT
GTTTCTGATTGGGGAGAATGGAGTGCATGCGAACTTGGCTGCAATGAAGCTGAGACCTCG
ACTCGTATGAGAAGTATAATATCAGCAGATGAATGCGGAGGACAGGAATGTCCTGTCGAA
CTGTCAGAAAATCGTGGATGCAATACTGTTTGTCTCAACGGCGGTTTATATGACGATATG
ACTTGCCAATGTCCAGAAGGATGGACTGGAGAGTGCTGTGAAGAAGATGTGGATGAATGC
CTTGAGAGAACGGCGGAATGTAACAGACTTGCATATTGTGAAAACACTGTAGGAAGTTAC
AGTTGCATCTGTATTTCGGGATACACTGGTGACGGTTTTGATTGCACAGATGTAAATGAA
TGTGATGAAAATCACAACTGTCCAGAAAACACCAAGTGTGTTGATCACATCGGCGAATAT
TCTTGCGTCTGTGAAGACGGGTTTGAAGGTTCTAATGCAAACTGTCAAGACATTGACGAG
TGTGCCCGGGGAGTTCACAACTGTCATTCAAACTCGTTGTGCGAAAACACAGATGGTGGG
TTTACTTGCACCTGCAACGCAGGATATTCTGGCAATGGAACGCATTGCATCGTTGCACCA
TAA
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[89-145] 1.01E-11 - T[144-199] 9.81E-10 - T[198-255] 2.49E-14 - T[254-309] 2.09E-8 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[91-145] 1.3E-11 - T[147-194] 1.3E-10 - T[200-255] 1.7E-14 - T[257-307] 8.1E-9 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[93-146] 11.862 - T[148-200] 10.365 - T[202-256] 13.449 - T[258-312] 9.291 |
| SMART |
TSP1_rpt (IPR000884) - T[96-146] 5.4E-10 - T[151-200] 1.4E-7 - T[205-256] 2.0E-13 - T[261-312] 0.0017 |
| Pfam |
TSP1_rpt (IPR000884) - T[98-145] 7.1E-7 - T[152-199] 1.5E-6 - T[206-255] 2.7E-12 - T[262-309] 0.08 |
| PANTHER |
FBN (IPR011398) - T[290-412] 3.8E-61 - T[321-457] 3.8E-61 |
| SMART |
EGF-like_dom (IPR000742) - T[296-334] 45.0 - T[339-376] 0.66 - T[380-416] 0.0052 - T[420-457] 6.8E-4 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[322-333] . - T[322-333] . - T[402-415] . - T[443-456] . |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[323-457] 6.43E-14 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[336-375] 1.0E-9 - T[377-415] 2.6E-7 - T[417-456] 2.2E-11 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[336-374] 13.67 - T[377-416] 15.107 - T[417-457] 16.678 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[336-376] 6.5E-7 - T[377-416] 4.0E-7 - T[417-457] 1.7E-9 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[353-364] . - T[393-404] . - T[434-445] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[417-443] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 37.45 % | 142 | 2.64E-36 |
| AGRB2_HUMAN | 32 % | 111 | 4.61E-26 |
| AGRB3_HUMAN | 37.438 % | 124 | 3.22E-30 |