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- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S416.g08467.01.t
Possible name(s)
COL11A1; COL11A2; COL5A3
Gene model
Location
S416 [28,441 / 51,631]
Amino acid sequence
Length: 1,538
>Phmamm.CG.MTP2014.S416.g08467.01.p
MATVRVNGDSIQPFLLRMKHQMTWQQFGIQIGENAELHYNDNSDEGPGRAIFEGVKLNDG
RWHKVAFSVYNNQVRLFVDCSRVGEVHISRDLSAYLDLNGIVIMGQQVGENIETFQGDIN
SLIFSDDPTHAALMCRKKFKLAPVCTAAAAIVEPPETAFVSQGEAREAAAIGDEDQAGLL
IPTGGPGGRGDGGDGNGTGGLKDTYVAGPPGPPGDPGLIGPPGFQGPMGEQGEHGDPGEP
GRDGISGEKGLPGPPGRHIMIPFRIATPDGQKGPGSNAPAEIQAQLSLTQARLALAGPPG
PRGVAGMPGAPGEFGPAGEKGESGEPGMMGQRGPRGPPGLDGQTGKRGRSGEDGLRGEPG
SVGMKGDRGFDGLPGLPGPKGHRGETGPAGLQGPPGENGERGEHGDSGPRGIPGPQGARG
ELGPRGTPGTQGQPGPQGDPGPPGQQGATGPQGINGPQGLMGPPGSKGPSGKPGLPGIPG
ADGMPGHPGNEGASGSKGSLGPPGPQGPQGYKGPRGVKGEGGVRGIKGNKGDDGPSGVNG
YKGDMGPKGDQGVSGLPGPRGEDGADGMKGREGPRGEIGPIGQPGIKGKIGAPGLNGYNG
RVGQKGSRGIPGALGRPGLKGRRGPEGKRGREGQRGPKGPRGKRGSRGPSGMTGTKGGRG
QDGPAGPVGERGPPGPQGANGPIGPKGPPGQPGKDGVAGHSGSRGEPGFQGKTGPPGPAG
VVGLQGSTGEVGPSGERGHPGPAGEPGPPGLSGSAGKEGAKGDRGPLGPPGKFGPPGPQG
YPGKRGDQGDRGSQGLKGNEGAPGPPGPSGSIGPQGPPGPSGQIGPQGRPGPQGPPGPAG
EKGSNGAQGGVGPVGRDGERGPSGLQGPPGDNGPRGEDGDKGEQGPPGDAGLKGSKGDGG
PPGPPGEQGPLGNPGPSGTDGVPGPRGQQGLYGAKGDEGERGYAGPPGPRGLQGLPGPSG
KKGDTGDPGSLGQPGPPGQRGSPGPQGADGPQGPSGSYGQPGKVGDKGESGQAGAPGSPG
DAGPQGMKGERGQKGEFGQLGPQGPPGDQGPRGDDGPQGFPGPIGQPGDTGPAGPAGAAG
NDGDVGDRGDDGDPGEPGPPGPMGESGPPGGPGRRGPAGQTGPEGKSGEKGEKGQSGSAG
PSGDGGPPGAQGKTGKQGVDGLQGIAGPVGGPGLPGSPGADGPPGPMGPSGLKGVKGDMG
VSGEKGDAGLTGITGAPGDPGEKGQQGPMGRHGPMGDKGEEGRNGPAGPVGPTGPPGLPG
GLGSKGNKGAAGPTGPKGDLGIPGPPGPPGPPGSITDAAPLMAGLNSEKGVTRSRRESGE
RTKRQVDMQDDFYDEYQQGLAEIFGAMESIKQELQMMREPLGRSSDNPGRSCKDIWLCHR
DSPSGNYWIDPNGGCAADAMEVYCDFQAEGDTCIEAINPSFDYNTSIPQFKFLRLLSSEA
RQLFTYKCVNSIGWEMDTGNYSKAVQLMGHNEEVLTYGSEHITLIEDSCKSGSETGQVVL
EIRTREVDLLPLVDYKALDFGTKAQRHGYHIGRVCFSG
Nucleotide sequence
Length: 4,617
>Phmamm.CG.MTP2014.S416.g08467.01.t
ATGGCCACTGTTCGTGTCAATGGCGATAGCATTCAGCCTTTTCTTCTGAGGATGAAGCAT
CAAATGACATGGCAACAATTTGGCATCCAAATTGGTGAAAATGCAGAGTTACACTACAAC
GACAATTCGGATGAGGGACCAGGAAGAGCAATATTTGAGGGGGTGAAGTTGAATGATGGA
AGATGGCATAAAGTTGCATTTTCTGTTTACAACAATCAAGTACGACTCTTTGTTGATTGT
TCACGGGTTGGAGAGGTCCATATATCACGGGACTTATCAGCCTATCTGGACTTGAACGGA
ATTGTGATTATGGGACAACAAGTTGGCGAGAATATTGAGACGTTTCAGGGAGATATTAAC
AGCCTTATCTTCTCTGATGACCCCACTCATGCTGCTTTAATGTGTCGCAAGAAATTTAAG
CTTGCTCCTGTCTGTACTGCAGCAGCTGCGATTGTGGAGCCCCCAGAAACAGCATTTGTT
TCACAGGGAGAAGCCAGAGAAGCTGCAGCAATCGGTGATGAAGATCAGGCCGGTTTGTTA
ATTCCAACTGGAGGACCAGGTGGTAGAGGGGATGGTGGCGATGGCAATGGTACAGGTGGA
TTAAAGGACACTTATGTCGCTGGCCCTCCTGGCCCGCCTGGAGACCCGGGTTTGATTGGG
CCGCCTGGTTTTCAAGGTCCTATGGGTGAACAAGGAGAGCACGGTGACCCGGGAGAGCCC
GGAAGAGATGGAATCTCTGGCGAAAAGGGTTTACCAGGACCACCTGGCCGACACATAATG
ATACCATTCCGAATTGCAACTCCTGATGGACAAAAGGGCCCTGGATCCAATGCTCCTGCT
GAGATTCAAGCACAACTGTCTCTAACCCAAGCTCGTCTTGCATTAGCTGGACCACCTGGA
CCAAGAGGTGTGGCAGGAATGCCAGGAGCACCAGGTGAATTTGGTCCAGCTGGTGAAAAG
GGAGAGTCTGGAGAGCCAGGAATGATGGGTCAACGTGGGCCAAGGGGACCACCTGGTTTG
GATGGCCAAACTGGAAAGAGGGGACGGTCCGGTGAGGACGGACTTCGTGGAGAACCAGGT
TCAGTTGGAATGAAGGGTGATCGCGGATTTGATGGTTTGCCTGGCTTACCGGGACCAAAA
GGACACAGGGGTGAAACAGGTCCAGCAGGTCTGCAAGGACCCCCAGGAGAAAATGGAGAA
AGGGGTGAACATGGTGATTCTGGACCCAGAGGAATTCCTGGACCACAGGGTGCTAGAGGT
GAACTGGGACCGCGGGGAACACCTGGGACACAAGGACAACCGGGACCGCAAGGTGACCCT
GGACCGCCTGGTCAGCAGGGAGCAACTGGTCCGCAGGGCATAAATGGACCTCAAGGTCTT
ATGGGTCCTCCTGGATCCAAGGGACCATCAGGAAAACCTGGTCTTCCAGGCATTCCAGGT
GCTGATGGGATGCCTGGTCACCCTGGCAACGAAGGAGCATCTGGTAGCAAGGGTTCATTG
GGTCCACCAGGACCACAAGGTCCACAAGGCTACAAAGGACCCAGAGGAGTTAAGGGTGAA
GGTGGTGTACGTGGAATCAAAGGAAACAAGGGTGACGATGGTCCTTCTGGGGTGAATGGA
TACAAAGGAGACATGGGCCCGAAAGGAGACCAGGGTGTTTCTGGTCTTCCTGGTCCGCGT
GGTGAAGATGGTGCTGATGGAATGAAGGGCAGAGAAGGGCCCAGAGGTGAAATTGGACCC
ATTGGACAGCCAGGAATTAAGGGCAAAATCGGAGCACCCGGTCTCAACGGTTACAACGGA
AGAGTCGGTCAAAAGGGTTCACGGGGAATCCCCGGTGCGCTGGGGCGACCTGGGCTTAAA
GGAAGAAGGGGTCCTGAAGGGAAACGAGGACGCGAAGGTCAAAGAGGTCCCAAGGGCCCC
CGAGGCAAACGTGGATCACGTGGTCCTTCTGGTATGACGGGAACCAAGGGTGGACGTGGA
CAAGACGGACCTGCAGGCCCAGTTGGAGAAAGGGGACCACCTGGACCCCAAGGTGCCAAC
GGACCGATTGGGCCAAAAGGACCACCTGGACAACCAGGAAAAGATGGAGTAGCAGGACAC
TCTGGAAGCCGCGGAGAACCTGGTTTCCAAGGAAAGACTGGACCTCCAGGCCCAGCCGGA
GTTGTCGGCCTTCAAGGTTCCACTGGTGAGGTTGGACCGTCTGGCGAACGAGGACACCCA
GGGCCCGCTGGAGAACCGGGCCCACCTGGATTGTCAGGCTCTGCAGGCAAAGAAGGAGCA
AAGGGTGACCGCGGACCACTAGGGCCACCCGGAAAGTTCGGACCTCCTGGACCACAGGGT
TATCCTGGAAAGAGAGGCGACCAAGGAGACAGGGGAAGTCAAGGTCTTAAAGGTAACGAG
GGTGCTCCGGGGCCACCTGGGCCATCGGGCTCAATTGGACCTCAAGGACCACCAGGCCCA
TCCGGACAGATCGGACCACAGGGTCGACCCGGACCCCAAGGCCCACCAGGTCCGGCTGGA
GAGAAAGGAAGCAATGGTGCTCAAGGTGGTGTTGGTCCAGTTGGACGGGACGGCGAACGA
GGTCCAAGCGGTCTTCAGGGACCACCTGGAGATAATGGCCCTCGCGGCGAAGATGGCGAC
AAGGGTGAACAAGGACCCCCTGGTGACGCCGGATTGAAGGGTTCCAAGGGTGATGGTGGA
CCCCCAGGCCCCCCTGGAGAACAAGGACCACTCGGAAATCCCGGACCCTCAGGAACAGAC
GGTGTACCAGGACCACGTGGACAACAGGGTCTGTATGGTGCTAAGGGAGACGAAGGCGAA
AGAGGTTATGCTGGACCACCGGGACCACGCGGTCTTCAGGGCTTGCCGGGACCATCAGGT
AAAAAGGGTGACACTGGAGACCCCGGAAGTTTGGGTCAACCTGGACCACCAGGTCAGCGT
GGTTCTCCCGGACCGCAAGGAGCTGATGGACCACAAGGACCTTCCGGATCGTACGGACAA
CCAGGAAAAGTTGGCGATAAGGGTGAATCAGGTCAAGCTGGTGCCCCCGGAAGTCCAGGT
GACGCAGGACCTCAGGGTATGAAAGGCGAACGAGGTCAGAAGGGCGAATTCGGACAACTT
GGGCCCCAAGGTCCCCCAGGTGATCAAGGACCAAGAGGTGATGACGGTCCCCAAGGGTTC
CCGGGTCCCATTGGACAACCTGGAGATACTGGACCTGCTGGACCCGCCGGGGCAGCTGGC
AACGACGGTGACGTGGGCGACAGAGGTGACGATGGAGACCCTGGCGAACCTGGACCACCT
GGACCAATGGGTGAATCTGGACCCCCTGGTGGACCTGGACGAAGAGGTCCTGCTGGTCAA
ACCGGTCCTGAGGGCAAATCCGGCGAGAAAGGAGAAAAGGGTCAATCAGGATCTGCTGGG
CCCTCTGGAGACGGCGGACCGCCTGGAGCCCAGGGCAAAACTGGAAAGCAAGGTGTCGAC
GGATTGCAAGGAATTGCTGGACCTGTGGGTGGCCCTGGCCTTCCTGGGAGTCCAGGTGCT
GACGGACCTCCAGGACCTATGGGTCCTTCTGGACTTAAGGGAGTAAAAGGAGATATGGGT
GTGTCAGGAGAAAAGGGAGACGCTGGACTTACTGGTATAACTGGAGCCCCTGGTGATCCT
GGAGAGAAGGGACAACAAGGCCCTATGGGACGACATGGACCTATGGGTGACAAGGGCGAA
GAGGGACGTAATGGACCTGCCGGCCCCGTTGGACCCACTGGACCCCCTGGTTTGCCTGGT
GGCCTTGGATCTAAAGGAAACAAGGGAGCTGCTGGTCCTACTGGACCAAAGGGAGATCTC
GGTATTCCGGGTCCGCCTGGACCACCGGGTCCACCTGGAAGCATCACAGACGCCGCTCCG
CTTATGGCTGGTCTAAACAGTGAGAAGGGAGTGACTAGAAGCAGAAGGGAATCCGGTGAA
CGGACCAAACGCCAAGTCGACATGCAGGATGACTTCTACGATGAATACCAACAAGGTTTG
GCTGAGATCTTCGGTGCCATGGAATCGATCAAACAGGAATTACAAATGATGCGCGAACCT
CTAGGGAGATCATCTGACAATCCCGGTCGCAGCTGTAAGGATATCTGGCTGTGTCACCGT
GATTCACCTTCAGGTAATTACTGGATTGATCCAAACGGAGGTTGTGCCGCTGATGCCATG
GAAGTTTATTGTGACTTCCAAGCTGAAGGGGACACCTGCATCGAAGCTATCAACCCAAGT
TTCGACTACAACACGAGCATTCCCCAGTTCAAATTCCTGCGTCTGCTCTCCTCTGAAGCC
AGGCAGTTGTTCACTTACAAGTGCGTCAACTCTATTGGATGGGAAATGGACACTGGAAAC
TACTCCAAAGCTGTACAGTTGATGGGTCACAACGAGGAGGTGCTGACCTATGGAAGCGAA
CATATTACCCTGATAGAGGATTCGTGCAAGAGCGGTAGCGAAACAGGTCAAGTTGTGCTT
GAAATACGCACAAGGGAAGTTGACCTTTTGCCTTTGGTCGACTACAAGGCTCTTGACTTC
GGCACCAAAGCTCAGCGACACGGCTATCACATCGGTCGTGTCTGCTTCAGTGGCTAA
| SMART |
Laminin_G (IPR001791) - T[1-128] 0.0073 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[1-145] 14.091 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[2-136] 6.73E-21 |
| Pfam |
Laminin_G (IPR001791) - T[29-123] 8.9E-7 |
| Pfam |
Collagen (IPR008160) - T[208-257] 7.7E-9 - T[297-352] 1.6E-8 - T[351-408] 2.5E-7 - T[1236-1294] 1.5E-7 |
| SMART |
Fib_collagen_C (IPR000885) - T[1340-1537] 3.0E-62 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1341-1421] 2.6E-26 - T[1424-1536] 6.7E-28 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1341-1537] 60.505 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1432-1536] 8.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 48.246 % | 518 | 2.97E-156 |
| COBA1_HUMAN | 58.437 % | 644 | 0 |
| CO5A3_HUMAN | 50.747 % | 622 | 0 |