- Transcript 'KH2012:KH.S555.1.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S418.g08489.01.t
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
S418 [3,069 / 17,045]
Amino acid sequence
Length: 800
>Phmamm.CG.MTP2014.S418.g08489.01.p
MADEGQLLSYFHTYVASIRRHLPYICCYVQSFHVDMLVNVLAAEDTITPESFEELAKSPD
GEKAKVLFDQLLMLQSPIWCQTVLQMMRQMGLDEVVDVIEGIKIQPAMAIPEIAESSKSS
HQNVKELHNVSDVTTAMKPLPLATMSLFAEPARTDSYKKFEAEFFETLDSDSSGSYNVCE
DSDLNALDDESSGGNESRGGNELKLRRYQLELAEPALTGENCVIVAPTGCGKTFVALHIA
LEHLVRRNGRKVVFLVHKVPLVQQQFDLFKRFISPKGFDVEQLSSANSTSTPAVKLIKSI
QVLVMTHQILLTTLKEESPELLHEISLLIFDECHHTMKNHPYNDIMRIYLKKKAEGAQQK
FPQIVGLTASPGSGKSNSVEQGCKHIFKLLANLDAKIPPVQVKENREELSAFTTNEDFVL
ENFYFNVPDRRGQPVYENEVIAFREKSKLLEEHELSHHFQIYANHLKVYNDALLINEHVR
ESDAIKYIEENLFQTFHDVEMKLRELYDKSEISKLAQNTPSPLLLKLIEIIQQNFSSNPN
SRCIIFAQTRDIATSLVTCLLESQPLMGFNLNPDYLTGSGAKNSQGGRGRAKQSKMFILA
YSDHHYIERERLNRDRNELTRQTLEYLQTIDRRKILSEIEEIQEKNSKVDVPTTSGQQRT
DEIWKLSCSKCRREVTSSDQFCKVKQHYVCVDKEFPSKALKGPLMTIIKSSEEHMSGKLQ
CGEITCRQEWGSQMIYRNHLIYVLGIKHFVLSNGKETKVAKKWKDAPFQVESSYDDLIGS
QGSDVEMDEDVDDDIYEFEF
Nucleotide sequence
Length: 2,403
>Phmamm.CG.MTP2014.S418.g08489.01.t
ATGGCTGATGAGGGACAACTGCTGTCGTATTTCCACACTTATGTGGCAAGCATCAGAAGG
CACCTCCCCTACATTTGCTGTTATGTTCAGTCCTTCCACGTTGACATGTTGGTCAATGTT
TTAGCTGCTGAAGATACCATAACTCCAGAAAGTTTTGAAGAATTAGCGAAATCTCCCGAT
GGAGAAAAAGCGAAAGTTTTGTTCGATCAACTGTTGATGTTGCAAAGTCCAATCTGGTGC
CAAACTGTTTTGCAGATGATGAGACAAATGGGACTAGATGAGGTTGTTGATGTTATTGAG
GGAATTAAGATTCAGCCAGCAATGGCTATCCCGGAAATCGCTGAGTCATCAAAGTCAAGT
CATCAGAATGTCAAAGAGCTACATAATGTTAGTGATGTCACTACAGCAATGAAGCCGCTA
CCATTGGCAACCATGTCACTATTTGCTGAACCAGCAAGAACCGATTCCTACAAGAAGTTT
GAAGCTGAGTTTTTTGAGACTCTTGACTCAGACTCATCAGGAAGTTATAACGTCTGTGAA
GATTCTGATTTGAATGCTTTGGATGATGAGAGCAGTGGTGGAAATGAGAGCAGAGGTGGA
AATGAACTCAAACTGAGGAGATACCAGTTGGAACTTGCAGAACCAGCGTTGACGGGAGAG
AATTGTGTGATTGTCGCACCAACAGGATGTGGAAAAACTTTTGTGGCTCTTCATATCGCT
TTGGAACATCTGGTGAGAAGAAATGGAAGAAAAGTTGTTTTTCTTGTTCATAAAGTTCCG
CTGGTTCAGCAGCAGTTTGATCTGTTTAAAAGATTTATTTCGCCGAAAGGGTTCGATGTG
GAACAACTGTCAAGTGCAAATTCAACAAGCACTCCAGCAGTGAAATTGATCAAAAGCATT
CAGGTTTTGGTGATGACTCATCAAATATTACTCACCACATTGAAAGAAGAGAGTCCAGAA
TTGCTGCATGAAATAAGTTTGTTGATTTTCGACGAGTGTCATCACACCATGAAGAATCAT
CCCTACAATGATATCATGAGAATTTATCTTAAGAAAAAAGCTGAAGGAGCACAACAAAAA
TTTCCCCAGATTGTCGGCTTAACAGCATCTCCAGGTTCAGGAAAATCAAACAGCGTCGAA
CAAGGCTGCAAACATATCTTTAAGCTTCTTGCAAATTTGGATGCAAAAATTCCACCAGTT
CAAGTGAAGGAAAATCGTGAAGAGCTCTCAGCTTTTACTACAAATGAAGACTTCGTTTTG
GAAAACTTTTATTTCAATGTCCCTGACAGACGAGGACAACCAGTCTATGAAAATGAAGTT
ATTGCTTTTAGAGAAAAAAGCAAACTACTTGAGGAACATGAACTTTCACACCATTTTCAG
ATTTATGCAAACCATCTTAAAGTTTACAATGATGCACTTCTGATAAACGAACACGTCCGA
GAATCCGATGCAATTAAATACATTGAGGAAAACTTGTTTCAAACATTCCACGACGTTGAG
ATGAAACTCAGAGAACTCTATGACAAGAGTGAAATATCAAAACTGGCCCAAAATACTCCC
AGTCCACTGCTACTGAAGCTCATAGAAATCATACAGCAAAATTTCTCGTCCAATCCCAAT
TCTCGGTGTATTATCTTCGCCCAAACGAGGGACATCGCAACTTCACTGGTGACTTGTCTC
CTTGAGTCACAACCGCTCATGGGATTTAATCTCAATCCTGATTATTTGACAGGATCCGGC
GCAAAAAACTCCCAGGGAGGTCGTGGACGAGCTAAGCAGAGCAAAATGTTCATTCTTGCT
TATAGTGATCACCACTATATTGAACGAGAGCGTCTGAACAGGGATAGAAATGAATTGACT
CGCCAAACTCTTGAATATCTTCAAACTATTGACCGAAGAAAAATTTTGTCAGAGATTGAG
GAAATCCAAGAGAAAAATTCCAAGGTTGATGTTCCCACCACTAGTGGTCAGCAGAGAACA
GATGAAATTTGGAAACTTTCGTGCAGCAAATGCAGAAGAGAAGTGACATCATCAGATCAG
TTCTGTAAAGTGAAACAGCATTATGTATGTGTGGACAAGGAGTTTCCATCGAAAGCACTC
AAGGGCCCTTTAATGACTATCATAAAGTCATCAGAGGAACATATGAGTGGGAAACTACAG
TGCGGTGAAATAACTTGCAGACAAGAATGGGGATCACAAATGATCTACAGAAATCATCTG
ATTTATGTTTTGGGGATAAAACACTTTGTCCTGAGTAATGGCAAGGAGACAAAAGTTGCA
AAGAAGTGGAAAGATGCTCCGTTCCAAGTGGAATCATCTTACGATGACCTCATCGGCTCA
CAGGGGTCGGATGTCGAGATGGATGAAGACGTAGATGATGATATCTATGAGTTTGAGTTT
TAA
| SMART |
Helicase_ATP-bd (IPR014001) - T[201-409] 2.5E-30 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[203-373] 8.57E-40 |
| Pfam |
Helicase/UvrB_N (IPR006935) - T[205-371] 1.2E-20 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[213-389] 22.637 |
| Gene3D |
RLR_C_sf (IPR038557) - T[654-794] 1.4E-22 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[654-780] 23.219 |
| Pfam |
RLR_CTR (IPR021673) - T[664-772] 9.4E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 28.912 % | 191 | 1.78E-51 |
| DDX58_HUMAN | 32.692 % | 217 | 2.42E-59 |
| IFIH1_HUMAN | 30.616 % | 160 | 1.88E-40 |