- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S427.g08614.02.t
Possible name(s)
CHAT; ITGB1; ITGB7
Gene model
Location
S427 [69,282 / 90,477]
Amino acid sequence
Length: 1,466
>Phmamm.CG.MTP2014.S427.g08614.02.p
MTRRGSKKIMEAASKLQYPTPSSPSEVTLPKLPVPDLQETLDQYLLCVRPLVNEGQFEQT
KRKVDEFGSAGGIGEKIQHKLIQHAEKQENWAYEWWLNDMYLDARVPLPVNSNPGMVLPK
QDFKDESSMLRYASKLVSGILDFKVILDARALPVDVARGQLAGQPLCMEQYYRLLTSYRL
PGYGRDQLVTVNPNPSEQAEHIIVMCNNQLFVVPISEGNRRLTEADFYVQLELIMRNGNN
CSGMNSPIGVLTSLNRNDWAEARELLMKDHVNRLSLDAVERSIFILCLDRSTNANSDVTV
AHQMLYGSGPKLNSCNRWYDKTIQLIISTDGNVGLSYEHSASEGIAVTALIEHLIKYVSI
QETKGLYRSDSMKTLTPPQHLKWKITDATSKFIQMAQSCAVEMSENLDLTVMRFDDYGKN
FIKRQNISPDAFVQVALQVAYYKIYQRLVSTYESASTRRFQKGRVDNIRAASIQALDFAK
ALFEPEDGTKTTDAKQMLLLRRAVKTQTDITIAAISGHGIDCHLLALKKMAEEMGFPVPE
IFSDPSYPLTNYFQLSTSQIPTKTDSFMCYGAVVPDGYGVSYNPHGDSITFCISSFRTCP
STCSEKFGNALRESMLTMKDICQQWNKRRSSSLVSTVVEPAEHLVTPKKLPLHRPINVRH
FSSEDDTLREEKPGDMAAESKAALLRNLKRRTSFTSTNALRSRAPLLIRPSFPQLGFPKS
AKLLSGAANLCVDTKANSCGECISLPGCAWCEYPEYANNPNAVISRCDLPENLEFEGCPK
GSIMNPTSTQNATQNKEHSNVGELDVGKATQIRPQLIKSKIRPGDPLTVRLSFKQAEDYP
VDLYYLLDLSNSMENDLESLRALGQTLGESMQNITRDFRLGFGSFIDKTVMPFISTVPSK
IDNPCSEAAPCVKTYSFHNDLPLTPEIEAFVNKVKDVTHSSNLDNPEGGLDAMMQAIVCQ
DQINWRKDATHLLVYSTDAGFHYAGDGKLGGIVLPNDGYCYLDNRGHYTKANEMNLQKMI
PKSVVGQLTSDSSNIIDLIQDAYNALKGKVILEVSAPSGVTISDQTAYCSSGKADGLECD
GVKIGDVVNFTLSISTDTCLTKPINVSVSPYGYNEEVIITLSPLCNCECTQDEAPNNCTG
HGAYECGACVCNEGFTGLDCSCDQQDEAGIESYLVNCTDAKTGVVCSDRGECQCGSCICK
QFADRKIDGKYCECDNTTCDRVYGKICNDLGKCNCGKCECKEGWTGNACECTLDESTCYD
PNKDKNNDTKPCSGNGECMCGACECKTNTNGIKFRGQYCETSPGGACDIHRDCIQCWAFG
TGTYNTSELCQDNCAKYNVTVLGDEGSAYQQECRFTDLSDDCVFNVYYAEVGDVIMVDVD
KEKKCITSIDPTYIIIGIIAAIVGIGLAILLIWKLLTSIKDAREYKNFQKDAQNPKWQGG
ENPIFKKATSTFRNPMYTGGKPTANL
Nucleotide sequence
Length: 4,401
>Phmamm.CG.MTP2014.S427.g08614.02.t
ATGACAAGAAGGGGAAGCAAAAAGATTATGGAGGCAGCATCAAAGCTTCAATACCCGACT
CCGAGTTCACCTTCGGAGGTGACTCTTCCCAAACTTCCCGTCCCGGATCTCCAAGAAACC
CTGGATCAGTATCTTCTCTGCGTCCGTCCTCTCGTCAACGAAGGTCAGTTCGAACAGACA
AAGAGAAAGGTCGATGAGTTTGGAAGCGCTGGTGGAATTGGAGAAAAAATCCAACATAAA
TTGATTCAACATGCAGAGAAACAGGAAAACTGGGCTTACGAATGGTGGCTCAACGACATG
TATTTGGATGCTCGGGTGCCTTTGCCTGTCAACTCAAATCCCGGGATGGTTCTGCCTAAG
CAAGACTTCAAAGATGAAAGTAGCATGTTGAGGTATGCCTCAAAGTTGGTGTCAGGAATT
TTGGATTTTAAAGTAATTTTGGACGCGAGGGCGTTGCCGGTAGATGTCGCTCGCGGACAA
TTAGCAGGTCAACCTCTCTGCATGGAGCAATATTATCGCTTGCTCACGTCATACCGGTTG
CCGGGATACGGAAGAGATCAACTTGTGACAGTAAATCCTAACCCAAGTGAGCAGGCAGAG
CACATCATCGTTATGTGTAACAACCAGCTTTTTGTAGTTCCAATAAGCGAGGGAAATCGG
CGACTTACCGAAGCTGATTTCTATGTCCAATTGGAATTAATCATGCGAAACGGAAATAAC
TGTAGCGGAATGAACTCTCCGATCGGCGTATTGACTTCGCTCAACCGCAACGACTGGGCC
GAAGCCAGGGAACTTCTCATGAAAGATCACGTAAACCGGTTGTCTTTGGATGCAGTGGAA
CGCAGCATATTTATTCTCTGTCTTGACAGATCCACTAACGCCAATAGTGACGTCACTGTT
GCCCATCAGATGCTGTATGGAAGCGGGCCGAAATTAAATAGCTGCAACAGGTGGTACGAC
AAAACCATCCAGTTGATTATCAGTACTGATGGAAATGTCGGTTTGTCTTACGAACACTCG
GCATCAGAAGGTATTGCAGTGACCGCCCTGATAGAACACCTCATCAAATATGTGTCTATT
CAAGAGACGAAAGGACTGTACCGATCCGATTCTATGAAAACTTTAACTCCTCCACAGCAC
CTCAAGTGGAAAATTACCGACGCAACTTCAAAATTTATTCAAATGGCGCAGTCGTGCGCC
GTGGAAATGTCAGAAAACTTGGACTTGACCGTGATGCGTTTTGATGATTATGGAAAGAAT
TTTATCAAGAGGCAAAATATCAGCCCTGATGCTTTCGTACAAGTTGCGTTGCAGGTGGCT
TATTACAAAATCTATCAACGTCTCGTTTCAACATACGAAAGCGCATCAACACGAAGATTT
CAGAAAGGGAGAGTTGACAATATACGCGCTGCAAGTATTCAAGCTCTTGATTTCGCCAAA
GCCTTGTTTGAACCTGAGGATGGCACAAAAACCACGGACGCCAAGCAAATGTTGCTTCTC
CGCCGAGCTGTCAAAACTCAGACTGACATAACGATTGCAGCCATCTCTGGCCACGGAATT
GATTGCCATTTACTGGCTCTTAAAAAGATGGCAGAGGAGATGGGTTTTCCTGTGCCCGAA
ATCTTCAGCGATCCGTCGTACCCACTTACCAACTATTTTCAACTCTCTACGAGTCAGATC
CCAACAAAAACCGATTCCTTCATGTGTTATGGGGCAGTTGTCCCTGATGGCTACGGCGTA
TCTTACAATCCCCATGGCGATTCTATCACCTTCTGTATATCATCCTTCCGAACTTGCCCG
AGCACTTGTTCGGAAAAGTTCGGAAATGCTTTGCGCGAATCGATGCTTACCATGAAAGAT
ATCTGTCAGCAATGGAACAAACGAAGATCATCCAGTTTAGTTTCGACAGTTGTTGAACCT
GCAGAGCACCTGGTTACGCCCAAGAAACTCCCCCTGCATCGTCCAATCAACGTGCGGCAT
TTTTCTTCGGAAGACGACACCTTGCGCGAAGAGAAACCCGGAGATATGGCTGCAGAGAGC
AAGGCTGCTTTGTTGAGAAATTTGAAAAGAAGAACAAGTTTTACTAGCACTAACGCACTA
CGATCTAGAGCCCCACTACTGATTCGACCGTCGTTTCCCCAGTTGGGTTTCCCCAAAAGC
GCTAAATTGCTTTCTGGAGCGGCAAATCTTTGTGTGGACACAAAAGCAAATTCATGTGGT
GAATGTATTTCATTACCAGGGTGTGCCTGGTGTGAATACCCTGAATATGCAAACAATCCA
AATGCAGTCATATCTCGCTGTGATTTACCAGAAAACCTTGAATTTGAGGGATGTCCAAAA
GGCAGTATTATGAATCCAACCTCAACACAAAATGCAACGCAAAACAAAGAACATTCCAAT
GTTGGTGAGTTGGATGTTGGCAAGGCAACTCAAATCCGTCCCCAACTAATTAAAAGCAAA
ATAAGACCAGGTGATCCTCTCACTGTCCGTCTATCATTCAAACAAGCAGAAGATTACCCA
GTTGATCTTTATTACTTGCTTGATTTATCCAACTCCATGGAAAACGATCTTGAGTCATTA
CGAGCCCTCGGACAAACTTTGGGAGAAAGTATGCAAAACATCACACGTGATTTCCGGCTT
GGTTTTGGATCCTTTATTGACAAAACTGTGATGCCCTTTATCTCCACTGTTCCATCCAAA
ATTGACAATCCATGCAGTGAGGCAGCACCTTGTGTAAAAACCTACAGTTTCCATAACGAT
CTGCCTCTAACCCCTGAAATTGAAGCTTTTGTGAACAAAGTAAAGGATGTTACGCATTCC
TCAAATCTGGATAATCCTGAGGGTGGATTGGATGCTATGATGCAAGCTATTGTGTGCCAG
GACCAAATTAACTGGAGAAAAGATGCCACACATTTGCTGGTATATTCAACTGATGCAGGA
TTTCATTATGCTGGGGATGGAAAACTTGGTGGAATTGTTCTTCCCAATGATGGTTATTGT
TACCTTGACAACCGAGGGCACTACACAAAAGCCAATGAAATGAATCTTCAAAAGATGATT
CCCAAATCAGTTGTTGGGCAACTGACCTCAGATTCATCGAATATCATTGACTTGATTCAG
GATGCCTACAATGCTTTGAAGGGAAAGGTTATTCTGGAAGTTTCTGCCCCATCCGGTGTT
ACCATTAGCGACCAGACTGCATACTGTAGCAGTGGAAAGGCAGATGGACTTGAGTGTGAT
GGTGTGAAGATAGGAGATGTGGTGAATTTCACTCTCAGTATTTCAACTGATACTTGTCTC
ACGAAACCCATCAATGTCAGTGTGTCACCTTATGGTTACAACGAGGAGGTAATTATCACC
CTTAGCCCCCTATGTAACTGTGAATGCACCCAGGATGAAGCTCCCAACAATTGCACTGGT
CACGGTGCTTATGAATGTGGAGCCTGTGTATGTAACGAAGGATTCACGGGACTGGACTGC
TCATGCGATCAACAAGATGAAGCCGGGATTGAATCTTACCTTGTCAACTGCACAGATGCT
AAGACTGGTGTTGTGTGTAGTGACAGAGGTGAATGCCAATGTGGAAGTTGTATATGCAAG
CAATTTGCTGACCGAAAAATTGATGGAAAATATTGTGAATGTGACAACACTACTTGTGAC
CGTGTGTATGGAAAAATATGTAACGATTTGGGAAAATGTAACTGTGGAAAGTGCGAGTGC
AAGGAAGGCTGGACTGGAAACGCATGTGAGTGTACGTTGGACGAATCGACCTGTTACGAT
CCCAACAAGGACAAAAACAACGATACGAAACCTTGTAGTGGAAATGGAGAATGCATGTGC
GGGGCCTGTGAATGCAAAACGAACACCAATGGAATTAAGTTCCGTGGTCAGTACTGCGAA
ACGTCGCCAGGTGGCGCATGTGACATCCATAGAGATTGTATTCAGTGTTGGGCATTCGGA
ACTGGTACCTACAATACCAGTGAGTTATGCCAAGATAACTGCGCTAAATACAACGTTACT
GTGCTCGGAGATGAGGGAAGCGCCTACCAACAAGAATGTCGATTCACTGATCTTTCTGAT
GACTGTGTGTTCAACGTGTATTACGCCGAAGTTGGTGACGTCATCATGGTTGACGTAGAT
AAGGAGAAAAAATGCATCACAAGCATCGACCCAACTTACATTATTATCGGCATCATCGCC
GCCATCGTCGGCATCGGCTTGGCTATCCTCCTTATTTGGAAACTTCTTACCTCAATCAAG
GATGCCAGGGAATACAAAAACTTCCAGAAGGATGCTCAGAATCCGAAATGGCAGGGCGGA
GAAAATCCAATCTTTAAGAAGGCAACTTCGACATTCCGCAATCCAATGTACACTGGTGGC
AAACCAACCGCCAATCTGTAA
| PANTHER |
Carn_acyl_trans (IPR000542) - T[12-632] 9.9E-266 |
| ProSitePatterns |
Carn_acyl_trans (IPR000542) - T[29-44] . - T[317-344] . |
| SMART |
PSI (IPR016201) - T[730-779] 3.4E-4 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[738-1127] 2.4E-166 |
| PRINTS |
Integrin_bsu (IPR015812) - T[767-786] 3.1E-74 - T[811-824] 3.1E-74 - T[839-857] 3.1E-74 - T[879-898] 3.1E-74 - T[911-930] 3.1E-74 - T[944-966] 3.1E-74 - T[971-986] 3.1E-74 - T[1272-1285] 3.1E-74 - T[1389-1406] 3.1E-74 - T[1406-1424] 3.1E-74 - T[1441-1451] 3.1E-74 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[836-1014] 2.6E-79 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[836-1012] 8.8E-78 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[836-1047] 3.46E-63 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[1065-1131] 2.62E-12 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[1272-1285] . |
| SUPERFAMILY |
Integrin_bsu_tail_dom_sf (IPR036349) - T[1305-1386] 3.14E-9 |
| SMART |
Integrin_bsu_tail (IPR012896) - T[1307-1390] 2.5E-12 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[1414-1460] 4.9E-21 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[1414-1457] 1.2E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 37.824 % | 502 | 7.21E-160 |
| CLAT_HUMAN | 47.619 % | 600 | 0 |
| ITB1_HUMAN | 42.586 % | 552 | 1.22E-178 |