- Transcript 'Boleac.CG.SB_v3.S134...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S427.g08615.01.t
Possible name(s)
HNRNPA1; HNRNPA1L2; HNRNPA3
Gene model
Location
S427 [93,142 / 105,700]
Amino acid sequence
Length: 556
>Phmamm.CG.MTP2014.S427.g08615.01.p
MEDTEKASNETHEIVINEPEQQRKLFIGGLSFDTTVDGLRAYFSKFGEVVDCIVMKDPKT
KNSRGFGFVTYERIKMVDKVMDARPHKLDGRTVTPKRAVSREDSERPGAHATVKKIFVGG
IRDEATEEQLRDHFKKFGSVDLIEIMEDRVSGKKRGFAFVTFSDHDSVDKIVSQKYHTIN
GHNCEVRKALPKNELDKYRTKQPPRNGNSSSPGNDRGLPPPEYYRDREREYRRSPPPPAY
DRYAHSAYERYPPCYERSYAPPREYERYPPPREYASEYEYSRSSDYYRREGDLYSRSRKQ
TSSALVSPRQSISSRNNDYLYRYRYYPYQYDYYERSYDSVSPPPKPTSSLLALPAPESYS
VKERSPSNSSESPLAICKSLLISTTECRSNMYVSSKRRQDRRAAYAERPSSYDYPPREAA
YAERPSSYDYPPREGERERAAVPPSSAERSSHERSYASSHVPVESSREVRESRESRDPYA
RSSAATAPEYEPYSRPKAEPGSNGYDYSSYMNSSSSYGPMKSSSYSSRSAPYAGSYPSSS
AAPSGSSGAYTSSSRY
Nucleotide sequence
Length: 1,671
>Phmamm.CG.MTP2014.S427.g08615.01.t
ATGGAAGACACGGAAAAGGCTTCAAATGAGACACATGAGATTGTCATTAATGAACCAGAA
CAGCAAAGGAAACTGTTTATCGGTGGCTTAAGCTTCGATACAACAGTAGATGGACTACGT
GCATACTTCTCAAAGTTTGGTGAAGTTGTCGACTGCATTGTTATGAAGGATCCCAAAACC
AAGAACTCAAGGGGGTTTGGTTTTGTTACCTATGAAAGAATTAAAATGGTTGACAAAGTA
ATGGATGCAAGGCCTCATAAACTTGATGGAAGGACAGTCACTCCAAAAAGAGCTGTGTCG
AGAGAAGATTCGGAAAGACCTGGAGCTCATGCAACTGTGAAGAAAATCTTTGTTGGTGGG
ATTCGTGATGAGGCAACAGAAGAGCAACTACGAGACCATTTCAAGAAGTTTGGTTCTGTG
GATTTAATTGAGATTATGGAAGATCGTGTCTCAGGAAAAAAACGAGGTTTTGCTTTTGTG
ACCTTCAGTGACCATGATTCAGTTGACAAGATTGTTTCACAAAAATACCACACTATTAAT
GGCCACAACTGTGAAGTGCGAAAAGCTTTGCCGAAGAATGAACTTGACAAATACAGAACA
AAGCAACCCCCTAGAAATGGTAATTCTAGCAGTCCTGGCAATGACCGTGGTTTGCCTCCT
CCAGAATATTACCGGGACCGCGAAAGAGAATACAGAAGAAGTCCACCTCCTCCAGCATAT
GATCGATATGCTCACTCAGCTTACGAACGCTATCCTCCATGTTATGAACGCTCATATGCA
CCACCTAGAGAGTATGAACGTTACCCCCCACCTCGCGAGTATGCAAGTGAATATGAATAC
TCAAGGAGCTCCGATTACTACCGAAGAGAGGGTGATCTTTATAGCAGAAGCAGAAAACAA
ACTTCTTCAGCTCTAGTGTCACCCAGGCAGTCAATATCTTCCAGAAACAACGACTATCTT
TATCGCTACCGTTACTACCCATACCAATATGATTACTATGAACGATCTTATGACAGTGTT
TCTCCACCTCCAAAGCCTACCTCAAGTCTTTTAGCACTGCCAGCACCAGAAAGCTATTCT
GTGAAGGAAAGGTCTCCTAGTAACAGCAGTGAGTCTCCATTAGCTATATGCAAGTCCTTG
CTGATCAGTACAACAGAGTGCAGGTCCAATATGTATGTTTCTTCCAAGAGAAGACAGGAC
AGGAGAGCCGCCTACGCAGAACGCCCATCTTCGTATGACTACCCACCAAGGGAGGCTGCC
TACGCAGAACGCCCATCTTCGTATGACTACCCACCAAGGGAGGGTGAGCGTGAAAGAGCA
GCTGTGCCACCCAGCTCAGCTGAAAGGAGTTCACATGAACGTTCATATGCCAGCTCACAT
GTGCCTGTGGAAAGTAGCAGAGAAGTCCGAGAGAGCAGGGAATCGAGGGATCCATATGCC
AGATCAAGTGCTGCCACAGCACCAGAATATGAACCATACAGTCGTCCTAAGGCTGAACCA
GGAAGCAATGGTTATGACTACTCGTCATATATGAACAGCAGTAGCAGTTACGGACCGATG
AAGAGTAGTTCGTACAGTTCACGCTCTGCACCATATGCTGGATCCTACCCAAGCTCCAGT
GCAGCACCCAGTGGCAGTTCTGGTGCATACACATCCAGCTCTCGTTATTAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[18-104] 1.4E-26 - T[108-189] 4.8E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[19-121] 3.36E-28 - T[111-216] 2.42E-25 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[23-106] 16.551 - T[114-191] 17.046 |
| SMART |
RRM_dom (IPR000504) - T[24-96] 5.3E-24 - T[115-187] 1.2E-22 |
| Pfam |
RRM_dom (IPR000504) - T[25-93] 1.2E-15 - T[116-180] 1.2E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ROA1_HUMAN | 70.225 % | 280 | 1.02E-89 |
| RA1L2_HUMAN | 69.101 % | 277 | 3.11E-89 |
| ROA3_HUMAN | 70.787 % | 275 | 8.27E-88 |