- Clone 'cicl077e23' >
- Clone 'cien87190' >
- Transcript 'Cisavi.CG.ENS81.R19....' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S453.g08914.02.t
Possible name(s)
POU4F1; POU4F2; POU4F3
Gene model
Location
S453 [50,416 / 52,931]
Amino acid sequence
Length: 387
>Phmamm.CG.MTP2014.S453.g08914.02.p
MLAPHHHRPPSPVCTVTSLNTNNYSTEQKYTPLHNAADAMRRHCMTSPVAYSGNLFAGFD
ESFLARAEALAAVDYTGKNQFKPEPTNHSYYAPSATHYVTQQHTAPAMPPPVYSSMHPPS
AFHHTAALQSTLETNDVIDQLGSSHGAFPTYQHPTFNTSSVMMSSADPVSQPHYISHTAP
PYNPTSHFHPVSSSIHPSIPPPSSTTATTTQPASPNTIVANFPASEYDADPRELEAFAER
FKQRRIKLGVTQNDVGRALANLKLPGVGSLSQSTICRFESLTLSHNNMVALKPILIAWLE
KAEEEHRRKMESAGLGDKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKN
VVRVWFCNQRQKQKRMKFSAFNAEAML
Nucleotide sequence
Length: 1,164
>Phmamm.CG.MTP2014.S453.g08914.02.t
ATGTTAGCCCCCCATCATCACCGACCCCCTTCACCTGTCTGCACAGTGACGTCACTGAAC
ACCAACAATTATTCAACTGAACAAAAATACACACCTTTACACAACGCCGCTGACGCAATG
AGACGTCACTGCATGACATCCCCAGTTGCATATTCGGGCAACTTATTCGCTGGTTTCGAC
GAATCTTTTCTCGCGCGAGCGGAGGCTCTGGCCGCTGTGGATTACACCGGAAAGAACCAG
TTTAAACCGGAACCGACAAACCACTCATATTATGCCCCATCAGCTACACATTATGTTACG
CAGCAGCATACAGCCCCAGCTATGCCACCGCCAGTGTACAGTTCAATGCATCCGCCGTCA
GCTTTTCACCACACAGCCGCTCTACAATCCACCCTCGAAACAAATGACGTCATCGATCAG
CTGGGCTCCTCTCACGGGGCATTTCCCACATACCAGCATCCCACCTTTAACACGTCATCA
GTAATGATGTCATCCGCCGACCCAGTGTCACAACCGCACTACATCAGCCACACTGCGCCC
CCATACAACCCCACCAGCCACTTTCACCCAGTGTCATCATCGATTCACCCCTCCATACCC
CCACCATCCAGTACGACGGCAACAACAACACAGCCAGCGTCTCCTAACACAATCGTGGCA
AACTTCCCCGCCAGTGAGTACGACGCAGACCCACGAGAATTGGAAGCATTTGCTGAAAGA
TTCAAGCAACGACGTATTAAGCTTGGAGTTACACAAAACGACGTGGGCAGAGCACTTGCC
AACCTTAAGTTACCTGGAGTTGGCTCCTTAAGTCAAAGCACAATTTGCAGGTTTGAATCG
CTCACCCTTAGTCACAACAACATGGTGGCTCTTAAGCCAATCCTTATCGCCTGGTTGGAA
AAGGCTGAAGAGGAACATAGAAGAAAGATGGAAAGTGCAGGACTAGGAGACAAAAAGAGG
AAAAGAACTTCAATTGCTGCTCCAGAAAAACGGTCCCTCGAAGCCTACTTTGCAGTTCAG
CCACGGCCTTCATCCGAGAAAATAGCAGCCATTGCTGAAAAGCTTGACCTCAAGAAAAAC
GTTGTGAGAGTTTGGTTTTGCAATCAAAGGCAAAAACAAAAAAGAATGAAATTTTCAGCT
TTTAATGCGGAAGCAATGCTTTAA
| SMART |
POU_dom (IPR000327) - T[226-303] 1.8E-48 |
| ProSiteProfiles |
POU_dom (IPR000327) - T[226-303] 46.581 |
| SUPERFAMILY |
Lambda_DNA-bd_dom_sf (IPR010982) - T[227-303] 1.5E-20 |
| Pfam |
POU_dom (IPR000327) - T[231-303] 7.5E-29 |
| CDD |
Cro/C1-type_HTH (IPR001387) - T[238-280] 0.00306979 |
| ProSitePatterns |
POU_dom (IPR000327) - T[244-256] . - T[271-284] . |
| PRINTS |
POU (IPR013847) - T[245-262] 8.9E-34 - T[271-284] 8.9E-34 - T[287-302] 8.9E-34 - T[317-337] 8.9E-34 - T[352-367] 8.9E-34 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[314-376] 9.41E-16 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[316-376] 16.811 |
| SMART |
Homeobox_dom (IPR001356) - T[318-380] 1.4E-17 |
| CDD |
Homeobox_dom (IPR001356) - T[319-377] 7.3925E-16 |
| Pfam |
Homeobox_dom (IPR001356) - T[319-375] 5.7E-17 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[351-374] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PO4F2_HUMAN | 51.989 % | 281 | 6.21E-92 |
| PO4F3_HUMAN | 53.425 % | 301 | 2.08E-100 |
| PO4F1_HUMAN | 86.709 % | 278 | 1.34E-90 |