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  1. Transcript 'Phmamm.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S458.g08966.01.t

Possible name(s)

CARF; WDR87

Location

S458 [274 / 14,017]

Sequences

Amino acid sequence

Length: 1,373

>Phmamm.CG.MTP2014.S458.g08966.01.p
MCVLCASESHLLKLFVTSSKDGIIKIWDCEGQLVRELMLGDTAPSVCFANGRDLLVALRN
HIMRIESFRYLPTDYLEILLEAVKAHRAPEFDPEEPMPLDGNTDGVMCVLTLSDDDSDED
PFQSSKSQKKPVERPSSSTPSQPKRRRMRQQKIFQKDEVSDETEEEQISADAVRIVPEDT
PVIWRVDKAKEFIATLDPEKMARFPVAPDGYIPNSVIRDRVQSMHPPVWTLPPLQLNTLQ
RIQEQLSLAFTADEGDRIVRGSRYHRQVELKKYLRGRREEGKLNVTIEDKRPAERSRSVT
PVKNFIHDDSQPRKIAGEEPRTPSPRVAKRQAAATDHLSRLLAQLSRERWCPTIMNVHNM
EKGLMMVADVMKRTSVRISTEISLYVARIQQACKEYKEVHGTSLFSDALQSEFSRQVSLL
LVENSPQLQMAAATCLAEMDDIYVKNCLRQYIMPKFVQTDSKGVISISTDDQVLTSAARG
LMHLSELIDVDRIVALSRLAEINRLRGTRANEKQVVDGVTLALKQQNFDPIEMDTWASFI
LPLLPVNLERKTPVKRTSSSKIRRPSIQNLLPALNDSLKRQPSVVVVNEKDERRFYMEAS
NQTLSGSDTSASAYMHYNSDGPPGLGKTNKQRSRNLQSDRSPQTTSTRFRSDNGSEIDFH
NTSLFRPVSVYDSMRRSAHSSSGLSPADVRSEADNLRKESVQVLRIMKRTSAVRSQQDFS
EVPSLDRQRSAQQLPAPTRERSLDHIRRFSQMLSPSTRRISPKSSISCHTITSQDSQVSP
KILSKVEEQLPPVEGEIVKQKNIVVIPSSEENDTEMTSPEMTQQSNVDDSFVPKDGMALH
NAFSPKGVLTCTRIGAKNFKITDCQGSMQKSDYIPQDTDKSVYRILVHYIKSAKKCDNYI
KGYVEGKDQLDAFLKDYFHYSNTKFIVRSSCKKYRDYVPAASETSNGTRYGRKDRIYWEF
NNRTLCVPFFGTPFTTHSSQIKHCQHGSVYYKLKPPEPEQCSSTQQMNTRPCPKSIFLDG
MESFQNQSVENIKRRRRQRPSKKRNCPAFMYIREVVLFPQFAISPEKHLESRQTVRKEKA
ALIVKLKKAMDDGHVDTLHRFYMHIPLPEAHMDHPTDAGMAPLKVIDPFVRNKIDELLAS
GTYEMRHIQLIVNDYVNESLLKNEIAGFQSEPLHTPSEQEIKDYIYLTNLTANSETESTE
NDKLMKNALQNEMVKSVNELMTLINNCSDEEALNKAKAEVTKVIRRVKQCSTRSSAPYEK
PSNCARHPVKSGTSQHHETIQVPQQDMNCQNSSIMMHQQPTNEDLDGGLMLPSINITQND
MLPTFSRLMESSEPVMLSGLDDRLMGHNTDFHHSQISNSIMHELRTPHPSFLK

Nucleotide sequence

Length: 4,122

>Phmamm.CG.MTP2014.S458.g08966.01.t
ATGTGTGTATTGTGCGCCAGTGAGTCGCATTTACTAAAGCTGTTCGTCACATCATCAAAA
GATGGAATAATTAAAATCTGGGACTGCGAAGGCCAATTGGTGCGAGAACTCATGCTAGGC
GATACAGCGCCTTCAGTTTGCTTCGCGAATGGCAGAGATTTGCTGGTCGCCCTTCGGAAT
CACATTATGCGGATAGAATCATTTCGATACCTACCAACAGACTATCTAGAAATTCTGTTA
GAAGCGGTCAAAGCCCACCGTGCACCGGAGTTTGATCCTGAAGAACCAATGCCCTTGGAT
GGAAATACTGATGGCGTTATGTGCGTTTTGACTCTCTCCGATGATGATAGCGATGAAGAT
CCCTTTCAGAGTTCGAAATCACAGAAAAAGCCAGTGGAAAGGCCTTCTTCGTCTACTCCG
TCACAACCCAAAAGAAGAAGAATGAGACAGCAAAAAATATTTCAGAAAGATGAGGTTTCC
GACGAAACTGAGGAAGAGCAGATTTCAGCAGACGCAGTCAGAATAGTGCCTGAAGATACG
CCAGTGATTTGGAGGGTAGACAAGGCAAAAGAGTTTATCGCCACTTTGGATCCGGAAAAA
ATGGCTCGCTTCCCTGTTGCTCCGGACGGCTACATTCCCAATTCAGTAATCCGCGACCGA
GTTCAATCCATGCACCCCCCAGTATGGACCCTCCCTCCCCTGCAGTTAAACACGCTACAG
CGAATTCAAGAACAACTTTCCCTGGCTTTCACGGCAGACGAGGGTGACAGGATAGTGCGG
GGAAGTCGTTATCACCGGCAAGTGGAGTTGAAGAAATATCTTCGTGGTCGACGAGAGGAG
GGCAAACTTAATGTGACTATTGAGGACAAACGCCCGGCAGAACGATCAAGAAGCGTGACA
CCTGTCAAAAATTTTATTCACGACGATTCGCAACCGCGAAAAATTGCCGGAGAAGAACCA
CGGACGCCATCACCGCGAGTCGCCAAAAGACAAGCAGCCGCCACCGACCACTTGTCACGC
TTGCTTGCGCAGCTGTCACGTGAGCGGTGGTGCCCGACCATCATGAACGTTCACAACATG
GAGAAGGGACTGATGATGGTGGCTGACGTCATGAAACGAACCAGTGTGAGGATAAGCACT
GAGATTTCTTTGTATGTGGCCAGGATTCAACAAGCCTGCAAAGAATACAAAGAGGTCCAC
GGCACAAGTCTCTTTAGTGATGCATTGCAATCGGAATTCAGCCGACAGGTGTCACTTCTG
CTTGTGGAAAACTCTCCTCAGCTTCAGATGGCAGCTGCAACGTGTCTGGCTGAAATGGAT
GACATTTATGTCAAGAACTGTTTGCGGCAATATATCATGCCCAAGTTCGTGCAAACTGAC
TCCAAAGGTGTAATATCAATTTCCACCGATGATCAAGTACTAACTTCGGCTGCACGAGGT
CTGATGCATCTGTCAGAGCTGATTGACGTGGACAGGATCGTAGCACTGTCCCGATTGGCT
GAAATCAACCGATTAAGAGGAACCAGGGCCAATGAGAAGCAAGTGGTTGACGGTGTAACA
CTTGCGTTGAAACAACAAAATTTCGACCCCATTGAAATGGACACATGGGCTTCCTTCATA
CTACCTCTTCTACCTGTAAACCTTGAACGAAAAACGCCAGTAAAACGAACATCAAGTTCC
AAGATACGACGTCCGTCTATACAGAATCTGTTGCCAGCTTTGAACGACTCTCTCAAGAGG
CAACCTAGTGTTGTTGTTGTCAATGAAAAAGACGAGAGGAGGTTTTACATGGAGGCGTCT
AATCAGACTTTAAGTGGGAGTGACACAAGTGCGTCGGCTTACATGCATTACAACAGTGAT
GGACCTCCCGGATTGGGAAAAACGAATAAACAGAGAAGCAGGAATCTGCAATCTGACAGA
AGCCCCCAAACAACTAGTACACGCTTTCGGTCGGACAATGGCAGTGAGATTGACTTCCAC
AACACTTCGCTGTTCCGTCCAGTCAGTGTCTACGATTCCATGCGCAGATCAGCCCATTCA
AGCAGTGGATTAAGCCCAGCAGACGTAAGATCGGAGGCGGACAACCTGCGTAAGGAGTCT
GTCCAGGTGCTTCGAATTATGAAACGGACGTCGGCTGTAAGAAGTCAACAGGATTTTTCT
GAAGTTCCGTCCCTGGATCGTCAAAGAAGTGCACAACAGCTTCCCGCTCCCACAAGAGAA
CGATCACTTGACCATATTCGACGCTTTTCCCAAATGTTGTCTCCTTCGACCCGAAGAATC
TCTCCCAAGTCTTCTATCTCTTGTCACACGATAACGTCCCAAGACTCCCAAGTCAGCCCG
AAAATTCTCTCCAAGGTGGAGGAACAATTACCTCCGGTCGAAGGAGAAATTGTCAAACAA
AAAAACATCGTAGTTATACCCAGCTCCGAAGAAAACGATACGGAAATGACGTCACCAGAG
ATGACGCAACAAAGCAACGTTGACGATTCCTTCGTTCCAAAAGATGGAATGGCATTACAT
AATGCCTTCTCGCCTAAAGGGGTGCTAACATGTACTCGCATTGGTGCAAAAAACTTTAAA
ATAACTGATTGCCAAGGAAGCATGCAAAAGTCTGATTATATACCACAAGACACAGACAAA
TCAGTATATCGCATACTGGTCCATTATATTAAATCAGCAAAAAAATGTGATAACTACATC
AAAGGATATGTTGAGGGCAAAGACCAGTTGGACGCTTTTCTGAAGGACTACTTTCATTAT
TCAAACACAAAATTCATTGTGCGATCATCCTGTAAAAAGTACAGGGATTATGTCCCCGCT
GCATCTGAAACAAGCAATGGCACCCGATATGGTCGAAAAGATCGAATATATTGGGAGTTC
AATAATAGAACCCTGTGTGTCCCCTTTTTTGGAACCCCCTTTACCACACACAGCTCACAA
ATCAAACATTGTCAACATGGCTCAGTGTACTACAAGCTAAAACCACCAGAGCCAGAACAA
TGCAGTTCAACCCAACAGATGAACACAAGGCCTTGTCCAAAATCAATTTTTCTTGATGGC
ATGGAAAGTTTTCAAAACCAAAGCGTGGAAAACATTAAAAGACGACGCAGACAACGACCA
TCAAAGAAGCGAAACTGCCCAGCCTTTATGTACATAAGGGAGGTGGTTCTTTTCCCACAG
TTTGCCATAAGTCCAGAAAAACATCTAGAATCTAGGCAGACGGTGAGAAAGGAAAAGGCT
GCACTTATTGTAAAACTGAAAAAGGCCATGGATGACGGCCATGTAGATACACTGCACAGA
TTTTACATGCATATTCCTTTACCCGAAGCACACATGGACCATCCTACTGATGCCGGCATG
GCTCCTTTGAAAGTAATAGATCCTTTTGTTAGGAACAAAATAGATGAACTTCTTGCATCT
GGAACATATGAAATGAGACATATCCAACTGATTGTCAATGATTATGTGAACGAGAGTTTG
CTAAAGAATGAAATAGCTGGTTTTCAGAGTGAACCGCTGCATACTCCTTCAGAACAGGAG
ATAAAGGATTATATTTACTTGACAAATTTGACAGCAAATTCAGAAACTGAATCAACAGAA
AATGATAAGTTGATGAAAAATGCTCTGCAAAATGAAATGGTCAAGAGTGTTAATGAGTTG
ATGACTTTAATAAACAACTGTTCAGATGAAGAAGCTCTTAACAAGGCCAAGGCTGAAGTT
ACTAAGGTCATACGACGGGTGAAGCAGTGTTCCACAAGATCTTCTGCACCTTATGAGAAA
CCAAGTAACTGTGCAAGGCACCCTGTTAAGAGCGGTACAAGTCAACATCATGAAACCATT
CAAGTGCCTCAACAAGACATGAATTGTCAAAACTCTAGCATAATGATGCACCAACAGCCT
ACAAATGAAGACTTAGATGGTGGTCTTATGTTGCCATCCATAAACATTACACAGAACGAC
ATGCTGCCAACTTTTAGTCGTTTAATGGAGTCCTCAGAGCCAGTTATGTTATCTGGCTTG
GATGACAGACTCATGGGACATAACACTGATTTCCACCATTCACAAATCAGTAACTCAATC
ATGCACGAACTGAGAACACCTCACCCTTCGTTCCTTAAATAA

InterProScan

SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[4-114] 3.66E-5
ProSiteProfiles
WD40_repeat (IPR001680) - T[14-28] 8.57
Pfam
CaRF (IPR029309) - T[953-1183] 6.8E-23

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value