- Clone 'cima878410' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S467.g09070.01.t
Possible name(s)
PCDH18; PCDH19; PCDHGB3
Gene model
Location
S467 [97,407 / 104,893]
Amino acid sequence
Length: 1,160
>Phmamm.CG.MTP2014.S467.g09070.01.p
SKMHFDASSTLVALLVTSSCVLSAARKTVHLPEESQTGYRIGNVAEILRIIPAPKSQYQL
LQENLVTTSTHPQQRRKWIGVDLRTGAITLRNRVDRERLCGESTTCIIRLQIFVSGEQKM
LDLDVIVDDVNDNSPAFPVRSIEVNVSETAELGKFINLDRYLAKDKDLGNNSAITYSINH
NGFFEVDQITNDMGSQSLRLKVVNELDFETVTFQQLELTAEDGGTPKRASHVPLRVKIVD
ANDNKPIFERKEYSVQLNENIPSGYVMTRVRAHDADTGHWGTVRYSVSKQNKALARHLVD
VDAKTGDVTLNQKLDREKHDGIRIGVEARDMSSTNQKTGFTWLVIHVRDSNDNAPEIMVS
LIPPGKDTTAYISEDAPEETAFAYVTATDADLGPNADVTIEIETVVPSSGEYGDDVTNRF
QLDSTGLLGIATQLDREDENKYKIVLRACDKGFPKLCSNTSIDLVVLDVNDNSPIFSEPE
VTVTLDEDTPVGEFVTTLQAVDGDSQNKPSFTENEYGEVVASSNGDVIYSIVHSEGTFSI
EPHTGRLTLVRPLDREARDSYTLTVEARDGGVPKVLSSSCKLTVRINDVNDNSPLFTYPP
EDNMTVHATIIRDDVILRIQASDYDLGPSGEVNYSIAAINGAAEIDTPVFILDSNTGDLR
LNTTMSDLNNVLGSYLVTIMARDHGPTSLSSIRHINVIITDRDVLPSLFPPARAGTSPNI
IIIIALASSLLLITVVVVIIFLRCRASKKQTRTYACHKVSQDDSEWSRVSVSSLKHKPID
ARRVVSQETDMGDTSVLWDEGNKTKTDLNLTASNTDVTNSSRNDVMMTRHLRNSTRSLGR
GYSQSSCSRSNFPEKFQSVPHLLTSSSHDGDSGRGDSDPDVASCDVTYDHDISRFRSNSS
HVSAKSDISDRPTNQLSRRCTELCLKYGHSDACWMPPSPYVEPPAFIDNPNSMYVQLCPL
PQNHLPHPEQQRQVDLEPIPEATPIRYFAGYPASDLSSIYSNVVNATRAHPQNGYYSPMR
PIIESTPRVTSFDHQTPTSSRLSPISSVSSPPASSLHADDNVQRKNHCIIRRDVAPDDIA
AKSPCSAPASPRRPSTSLARSYSADLLASETSSYRGYAPPRVEVRSPASSEQNFRSDAYG
QVTMRETEEIVQNIEKLLNT
Nucleotide sequence
Length: 3,551
>Phmamm.CG.MTP2014.S467.g09070.01.t
GCAGTAAAATGCATTTCGATGCTTCGAGCACTCTTGTAGCTCTTCTTGTGACGTCATCGT
GCGTCTTGTCTGCTGCGCGAAAGACCGTCCACCTTCCTGAAGAATCACAGACAGGCTACC
GTATTGGAAACGTCGCTGAAATTCTTCGTATCATCCCTGCACCGAAATCACAATATCAAC
TGCTGCAAGAAAACCTGGTTACGACATCCACGCACCCTCAACAGCGCCGCAAGTGGATAG
GTGTGGATCTTCGAACGGGAGCGATCACGCTGCGCAATCGAGTGGACAGAGAACGGCTAT
GTGGTGAATCTACCACGTGCATTATTCGTTTACAGATTTTTGTCAGTGGGGAACAAAAAA
TGTTAGATCTTGACGTAATAGTTGATGACGTCAACGACAACAGTCCCGCTTTTCCAGTCA
GATCAATTGAAGTGAATGTTTCCGAAACAGCTGAATTAGGCAAATTCATCAACCTGGACC
GATATCTTGCCAAAGATAAAGACCTAGGTAACAACTCAGCAATCACTTACTCAATAAATC
ACAACGGATTTTTCGAAGTTGATCAAATTACAAACGACATGGGTTCGCAAAGTTTGAGGC
TTAAAGTTGTCAACGAACTTGATTTTGAGACGGTTACCTTTCAACAATTAGAACTAACTG
CTGAAGACGGGGGAACTCCCAAACGTGCAAGTCACGTGCCTCTACGTGTTAAAATCGTTG
ATGCAAATGACAACAAGCCAATTTTTGAAAGAAAGGAATACTCAGTCCAACTCAACGAAA
ATATTCCATCCGGTTACGTTATGACGCGTGTTCGGGCCCATGACGCGGACACTGGCCACT
GGGGCACCGTACGATATTCGGTGTCTAAACAGAACAAAGCCCTCGCACGACACCTGGTGG
ACGTAGATGCAAAAACTGGCGACGTCACACTGAATCAAAAACTTGACCGCGAAAAGCATG
ATGGGATTCGTATTGGGGTGGAAGCACGTGACATGAGCTCGACAAATCAGAAAACAGGAT
TTACTTGGCTTGTAATCCATGTCAGAGATAGCAACGATAATGCACCTGAGATTATGGTCA
GCCTAATTCCTCCTGGAAAAGACACTACAGCTTATATAAGTGAAGACGCACCAGAGGAAA
CAGCATTTGCTTACGTCACTGCCACTGACGCTGATCTCGGACCAAATGCTGACGTCACTA
TTGAAATAGAAACAGTAGTGCCCTCAAGTGGCGAGTATGGCGATGATGTGACAAATCGAT
TTCAACTCGACTCAACCGGGTTACTTGGAATTGCGACGCAGTTAGATCGGGAAGATGAAA
ACAAATATAAAATTGTGTTGAGAGCTTGCGACAAAGGATTTCCAAAACTATGCTCCAACA
CCAGTATTGACCTTGTGGTTCTTGATGTGAACGATAATTCACCCATATTTTCTGAACCTG
AGGTGACTGTCACTTTAGACGAGGACACACCAGTGGGAGAGTTTGTTACAACTCTTCAAG
CTGTCGATGGCGATTCACAGAACAAACCATCTTTTACTGAAAACGAGTACGGCGAGGTGG
TTGCGTCATCAAACGGTGACGTCATATATTCGATTGTGCACAGTGAAGGGACATTCTCGA
TCGAACCTCATACTGGAAGACTAACTCTTGTGCGTCCACTAGACAGAGAAGCGAGAGACT
CGTACACGTTAACTGTGGAAGCAAGAGATGGAGGTGTTCCCAAAGTTCTTTCTAGTTCCT
GCAAACTAACTGTAAGGATTAACGACGTCAACGACAACTCTCCTCTATTTACGTATCCAC
CAGAAGACAACATGACTGTCCATGCAACCATCATACGTGATGACGTCATACTACGAATTC
AAGCTTCTGACTATGATTTGGGCCCAAGTGGTGAAGTTAACTATTCAATCGCCGCCATAA
ATGGAGCAGCGGAAATCGACACACCAGTTTTTATTCTTGATTCCAACACAGGCGACCTTC
GACTTAACACAACCATGTCTGACCTCAATAACGTGTTGGGTTCATACTTGGTTACAATCA
TGGCCCGTGACCATGGACCTACGTCACTCAGCAGTATACGTCACATCAACGTCATAATCA
CGGATCGCGATGTTCTTCCCAGCTTGTTTCCTCCCGCACGAGCTGGAACGTCACCAAACA
TCATTATCATTATCGCGTTAGCGTCATCGCTACTTCTCATCACAGTGGTTGTAGTGATAA
TATTCCTAAGATGCAGAGCCTCTAAAAAGCAAACCCGGACTTACGCGTGCCACAAGGTGT
CGCAAGATGACAGTGAGTGGAGTCGCGTATCAGTGAGCAGTTTGAAACACAAACCAATCG
ACGCGAGACGAGTGGTTTCCCAGGAAACTGACATGGGAGACACAAGTGTGTTGTGGGACG
AAGGCAATAAAACAAAAACTGACTTGAATCTAACCGCTTCCAACACTGACGTCACAAATT
CGTCACGCAATGACGTCATGATGACGCGCCATCTACGTAACTCGACCCGAAGTTTAGGAA
GAGGTTATTCGCAGAGCAGTTGCAGCCGATCCAATTTCCCGGAAAAATTTCAGTCTGTTC
CCCATTTGCTGACATCCTCATCACATGATGGCGATAGTGGGCGTGGGGACAGTGACCCGG
ATGTTGCAAGCTGTGACGTCACATACGATCATGACATTTCCCGTTTCCGTTCCAATTCAT
CTCACGTGAGTGCCAAAAGTGACATATCAGATCGACCAACCAATCAGCTTTCAAGGCGAT
GCACAGAATTATGTTTGAAATACGGACACAGCGATGCGTGCTGGATGCCACCAAGCCCTT
ACGTTGAACCACCAGCGTTCATTGACAACCCAAACTCGATGTATGTGCAACTCTGTCCAC
TACCACAGAATCACTTACCGCATCCGGAGCAGCAGCGACAGGTGGATCTGGAACCGATTC
CAGAAGCTACCCCGATACGTTACTTCGCCGGCTACCCAGCTTCCGACCTCAGCTCAATTT
ACTCAAACGTTGTAAATGCTACTCGGGCGCATCCCCAAAACGGATACTACTCTCCCATGA
GACCAATCATTGAGTCAACACCGCGAGTGACGTCATTCGATCACCAGACGCCTACGTCAT
CAAGGTTAAGCCCCATATCGAGTGTTTCGTCACCACCCGCCTCATCTCTGCACGCCGATG
ACAATGTACAGCGTAAAAATCATTGCATAATTCGTCGTGACGTAGCGCCTGATGACATCG
CTGCTAAGTCACCATGTTCGGCACCAGCCTCCCCAAGAAGACCTTCGACGTCACTAGCTA
GAAGTTATTCGGCGGATTTGCTGGCAAGTGAAACGTCAAGTTACAGGGGATACGCTCCAC
CGAGAGTCGAGGTTCGATCTCCCGCGTCCAGCGAGCAGAATTTCCGATCAGACGCTTACG
GACAAGTTACCATGCGTGAAACCGAAGAAATAGTGCAAAATATTGAGAAGCTTTTGAACA
CGTAGTGAAGACTCTTCAATTGTGCCGTTCATTAAGTTGCATTTTTTGCATGCCGCATTT
TTACATCGCTG
| Pfam |
Cadherin_N (IPR013164) - T[31-114] 1.6E-10 |
| SMART |
Cadherin (IPR002126) - T[44-135] 0.27 - T[161-246] 1.4E-15 - T[270-355] 2.0E-17 - T[385-474] 4.8E-17 - T[516-594] 3.1E-23 - T[619-707] 3.4E-6 |
| PRINTS |
Cadherin (IPR002126) - T[77-96] 2.2E-32 - T[248-277] 2.2E-32 - T[441-453] 2.2E-32 - T[455-474] 2.2E-32 - T[474-487] 2.2E-32 - T[543-569] 2.2E-32 - T[578-595] 2.2E-32 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[130-240] 9.42E-17 - T[236-360] 2.28E-23 - T[351-469] 1.2E-15 - T[465-599] 9.28E-27 - T[584-711] 1.37E-14 |
| Pfam |
Cadherin (IPR002126) - T[144-238] 5.1E-10 - T[253-347] 6.6E-14 - T[369-466] 6.4E-10 - T[483-586] 1.1E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[236-246] . - T[464-474] . - T[584-594] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.154 % | 331 | 8.08E-96 |
| PCD19_HUMAN | 30.458 % | 293 | 9.65E-83 |
| PCDGF_HUMAN | 30.604 % | 287 | 6.22E-82 |