- Transcript 'KH2012:KH.C1.1100.v1...' >
- Transcript 'KH2012:KH.C6.181.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S467.g09070.02.t
Possible name(s)
PCDH18; PCDH19; PCDHGB3
Gene model
Location
S467 [97,473 / 104,885]
Amino acid sequence
Length: 1,158
>Phmamm.CG.MTP2014.S467.g09070.02.p
MHFDASSTLVALLVTSSCVLSAARKTVHLPEESQTGYRIGNVAEILRIIPAPKSQYQLLQ
ENLVTTSTHPQQRRKWIGVDLRTGAITLRNRVDRERLCGESTTCIIRLQIFVSGEQKMLD
LDVIVDDVNDNSPAFPVRSIEVNVSETAELGKFINLDRYLAKDKDLGNNSAITYSINHNG
FFEVDQITNDMGSQSLRLKVVNELDFETVTFQQLELTAEDGGTPKRASHVPLRVKIVDAN
DNKPIFERKEYSVQLNENIPSGYVMTRVRAHDADTGHWGTVRYSVSKQNKALARHLVDVD
AKTGDVTLNQKLDREKHDGIRIGVEARDMSSTNQKTGFTWLVIHVRDSNDNAPEIMVSLI
PPGKDTTAYISEDAPEETAFAYVTATDADLGPNADVTIEIETVVPSSGEYGDDVTNRFQL
DSTGLLGIATQLDREDENKYKIVLRACDKGFPKLCSNTSIDLVVLDVNDNSPIFSEPEVT
VTLDEDTPVGEFVTTLQAVDGDSQNKPSFTENEYGEVVASSNGDVIYSIVHSEGTFSIEP
HTGRLTLVRPLDREARDSYTLTVEARDGGVPKVLSSSCKLTVRINDVNDNSPLFTYPPED
NMTVHATIIRDDVILRIQASDYDLGPSGEVNYSIAAINGAAEIDTPVFILDSNTGDLRLN
TTMSDLNNVLGSYLVTIMARDHGPTSLSSIRHINVIITDRDVLPSLFPPARAGTSPNIII
IIALASSLLLITVVVVIIFLRCRASKKQTRTYACHKVSQDDSEWSRVSVSSLKHKPIDAR
RVVSQETDMGDTSVLWDEGNKTKTDLNLTASNTDVTNSSRNDVMMTRHLRNSTRSLGRGY
SQSSCSRSNFPEKFQSVPHLLTSSSHDGDSGRGDSDPDVASCDVTYDHDISRFRSNSSHV
SAKSDISDRPTNQLSRRCTELCLKYGHSDACWMPPSPYVEPPAFIDNPNSMYVQLCPLPQ
NHLPHPEQQRQVDLEPIPEATPIRYFAGYPASDLSSIYSNVVNATRAHPQNGYYSPMRPI
IESTPRVTSFDHQTPTSSRLSPISSVSSPPASSLHADDNVQRKNHCIIRRDVAPDDIAAK
SPCSAPASPRRPSTSLARSYSADLLASETSSYRGYAPPRVEVRSPASSEQNFRSDAYGQV
TMRETEEIVQNIEKLLNT
Nucleotide sequence
Length: 3,477
>Phmamm.CG.MTP2014.S467.g09070.02.t
ATGCATTTCGATGCTTCGAGCACTCTTGTAGCTCTTCTTGTGACGTCATCGTGCGTCTTG
TCTGCTGCGCGAAAGACCGTCCACCTTCCTGAAGAATCACAGACAGGCTACCGTATTGGA
AACGTCGCTGAAATTCTTCGTATCATCCCTGCACCGAAATCACAATATCAACTGCTGCAA
GAAAACCTGGTTACGACATCCACGCACCCTCAACAGCGCCGCAAGTGGATAGGTGTGGAT
CTTCGAACGGGAGCGATCACGCTGCGCAATCGAGTGGACAGAGAACGGCTATGTGGTGAA
TCTACCACGTGCATTATTCGTTTACAGATTTTTGTCAGTGGGGAACAAAAAATGTTAGAT
CTTGACGTAATAGTTGATGACGTCAACGACAACAGTCCCGCTTTTCCAGTCAGATCAATT
GAAGTGAATGTTTCCGAAACAGCTGAATTAGGCAAATTCATCAACCTGGACCGATATCTT
GCCAAAGATAAAGACCTAGGTAACAACTCAGCAATCACTTACTCAATAAATCACAACGGA
TTTTTCGAAGTTGATCAAATTACAAACGACATGGGTTCGCAAAGTTTGAGGCTTAAAGTT
GTCAACGAACTTGATTTTGAGACGGTTACCTTTCAACAATTAGAACTAACTGCTGAAGAC
GGGGGAACTCCCAAACGTGCAAGTCACGTGCCTCTACGTGTTAAAATCGTTGATGCAAAT
GACAACAAGCCAATTTTTGAAAGAAAGGAATACTCAGTCCAACTCAACGAAAATATTCCA
TCCGGTTACGTTATGACGCGTGTTCGGGCCCATGACGCGGACACTGGCCACTGGGGCACC
GTACGATATTCGGTGTCTAAACAGAACAAAGCCCTCGCACGACACCTGGTGGACGTAGAT
GCAAAAACTGGCGACGTCACACTGAATCAAAAACTTGACCGCGAAAAGCATGATGGGATT
CGTATTGGGGTGGAAGCACGTGACATGAGCTCGACAAATCAGAAAACAGGATTTACTTGG
CTTGTAATCCATGTCAGAGATAGCAACGATAATGCACCTGAGATTATGGTCAGCCTAATT
CCTCCTGGAAAAGACACTACAGCTTATATAAGTGAAGACGCACCAGAGGAAACAGCATTT
GCTTACGTCACTGCCACTGACGCTGATCTCGGACCAAATGCTGACGTCACTATTGAAATA
GAAACAGTAGTGCCCTCAAGTGGCGAGTATGGCGATGATGTGACAAATCGATTTCAACTC
GACTCAACCGGGTTACTTGGAATTGCGACGCAGTTAGATCGGGAAGATGAAAACAAATAT
AAAATTGTGTTGAGAGCTTGCGACAAAGGATTTCCAAAACTATGCTCCAACACCAGTATT
GACCTTGTGGTTCTTGATGTGAACGATAATTCACCCATATTTTCTGAACCTGAGGTGACT
GTCACTTTAGACGAGGACACACCAGTGGGAGAGTTTGTTACAACTCTTCAAGCTGTCGAT
GGCGATTCACAGAACAAACCATCTTTTACTGAAAACGAGTACGGCGAGGTGGTTGCGTCA
TCAAACGGTGACGTCATATATTCGATTGTGCACAGTGAAGGGACATTCTCGATCGAACCT
CATACTGGAAGACTAACTCTTGTGCGTCCACTAGACAGAGAAGCGAGAGACTCGTACACG
TTAACTGTGGAAGCAAGAGATGGAGGTGTTCCCAAAGTTCTTTCTAGTTCCTGCAAACTA
ACTGTAAGGATTAACGACGTCAACGACAACTCTCCTCTATTTACGTATCCACCAGAAGAC
AACATGACTGTCCATGCAACCATCATACGTGATGACGTCATACTACGAATTCAAGCTTCT
GACTATGATTTGGGCCCAAGTGGTGAAGTTAACTATTCAATCGCCGCCATAAATGGAGCA
GCGGAAATCGACACACCAGTTTTTATTCTTGATTCCAACACAGGCGACCTTCGACTTAAC
ACAACCATGTCTGACCTCAATAACGTGTTGGGTTCATACTTGGTTACAATCATGGCCCGT
GACCATGGACCTACGTCACTCAGCAGTATACGTCACATCAACGTCATAATCACGGATCGC
GATGTTCTTCCCAGCTTGTTTCCTCCCGCACGAGCTGGAACGTCACCAAACATCATTATC
ATTATCGCGTTAGCGTCATCGCTACTTCTCATCACAGTGGTTGTAGTGATAATATTCCTA
AGATGCAGAGCCTCTAAAAAGCAAACCCGGACTTACGCGTGCCACAAGGTGTCGCAAGAT
GACAGTGAGTGGAGTCGCGTATCAGTGAGCAGTTTGAAACACAAACCAATCGACGCGAGA
CGAGTGGTTTCCCAGGAAACTGACATGGGAGACACAAGTGTGTTGTGGGACGAAGGCAAT
AAAACAAAAACTGACTTGAATCTAACCGCTTCCAACACTGACGTCACAAATTCGTCACGC
AATGACGTCATGATGACGCGCCATCTACGTAACTCGACCCGAAGTTTAGGAAGAGGTTAT
TCGCAGAGCAGTTGCAGCCGATCCAATTTCCCGGAAAAATTTCAGTCTGTTCCCCATTTG
CTGACATCCTCATCACATGATGGCGATAGTGGGCGTGGGGACAGTGACCCGGATGTTGCA
AGCTGTGACGTCACATACGATCATGACATTTCCCGTTTCCGTTCCAATTCATCTCACGTG
AGTGCCAAAAGTGACATATCAGATCGACCAACCAATCAGCTTTCAAGGCGATGCACAGAA
TTATGTTTGAAATACGGACACAGCGATGCGTGCTGGATGCCACCAAGCCCTTACGTTGAA
CCACCAGCGTTCATTGACAACCCAAACTCGATGTATGTGCAACTCTGTCCACTACCACAG
AATCACTTACCGCATCCGGAGCAGCAGCGACAGGTGGATCTGGAACCGATTCCAGAAGCT
ACCCCGATACGTTACTTCGCCGGCTACCCAGCTTCCGACCTCAGCTCAATTTACTCAAAC
GTTGTAAATGCTACTCGGGCGCATCCCCAAAACGGATACTACTCTCCCATGAGACCAATC
ATTGAGTCAACACCGCGAGTGACGTCATTCGATCACCAGACGCCTACGTCATCAAGGTTA
AGCCCCATATCGAGTGTTTCGTCACCACCCGCCTCATCTCTGCACGCCGATGACAATGTA
CAGCGTAAAAATCATTGCATAATTCGTCGTGACGTAGCGCCTGATGACATCGCTGCTAAG
TCACCATGTTCGGCACCAGCCTCCCCAAGAAGACCTTCGACGTCACTAGCTAGAAGTTAT
TCGGCGGATTTGCTGGCAAGTGAAACGTCAAGTTACAGGGGATACGCTCCACCGAGAGTC
GAGGTTCGATCTCCCGCGTCCAGCGAGCAGAATTTCCGATCAGACGCTTACGGACAAGTT
ACCATGCGTGAAACCGAAGAAATAGTGCAAAATATTGAGAAGCTTTTGAACACGTAG
| Pfam |
Cadherin_N (IPR013164) - T[29-112] 1.6E-10 |
| SMART |
Cadherin (IPR002126) - T[42-133] 0.27 - T[159-244] 1.4E-15 - T[268-353] 2.0E-17 - T[383-472] 4.8E-17 - T[514-592] 3.1E-23 - T[617-705] 3.4E-6 |
| PRINTS |
Cadherin (IPR002126) - T[75-94] 2.2E-32 - T[246-275] 2.2E-32 - T[439-451] 2.2E-32 - T[453-472] 2.2E-32 - T[472-485] 2.2E-32 - T[541-567] 2.2E-32 - T[576-593] 2.2E-32 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[128-238] 9.42E-17 - T[234-358] 2.28E-23 - T[349-467] 1.2E-15 - T[463-597] 9.28E-27 - T[582-709] 1.36E-14 |
| Pfam |
Cadherin (IPR002126) - T[142-236] 5.1E-10 - T[251-345] 6.6E-14 - T[367-464] 6.4E-10 - T[481-584] 1.1E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[234-244] . - T[462-472] . - T[582-592] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.113 % | 329 | 3.83E-95 |
| PCD19_HUMAN | 30.458 % | 293 | 1.03E-82 |
| PCDGF_HUMAN | 30.544 % | 286 | 1.32E-81 |