- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'Cisavi.CG.ENS81.R166...' >
- Clone 'cslv007c11' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S46.g01759.01.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
S46 [199,366 / 211,174]
Amino acid sequence
Length: 1,202
>Phmamm.CG.MTP2014.S46.g01759.01.p
MMTRLANSIGKGAPLDRTVKRDQTAPDHFMPAYKFKRVLGNNDLVSVETRFTTLAASLAQ
STGFVFIATLKQPPKNVGTIVSVTPKRSASSLPTAYFAIVSDTKTDRVDLHYGIGDNKHV
ARFESAGVFQDAMLWSNFTLEVYKDTASLFVNCQLIGSRRLETRFYRILDSRESQLRLAN
AYDHTTADFRGSMQKVRFLVGNVSAQETMNSHFACATDKPSESTEETQTAPANSPFGGGG
SYSWARDIVLQVLRNECNFSCSAELRSPGLRDTEFGSCWMDDTRYGDGDTWERDDCTNCT
CQNSRIQCTDIQCPVLNCIDIVHTKGQCCPSCPGKFPNIAFNVYSPIYVNLALFVFTFHD
AIYYRARRAHLIRLSFLPYGHGLDFIIAVWITESAKGFSPWSGWSECSVTCGIGHETRGR
SCDRVYFDCDGPSMQSRNCIREPCNVKVRRDGGWSPWTKWSPCSVTCGKGRTTKIRSCNS
PLPQLDGAQCVGPDRKTRDCKMSPCPVDGGWGEWSVWSECSATCDDGFKTRSRKCNNPKP
RFGGKQCSGDSKATEHCLVKACPIDGCLSSPCYPGVECSSYDDGSFVCGACPEGTQGDGT
QCEDIDECTLVPNACFHANGVHRCQNHFAGYTCLACPDGYKGDRPSGVGAEYALAHKQVC
RVVNPCTDDGNPCPDNARCIFLGLTVTPPFKCKCLPGYATAPGCEGLVCADDSDLDGVAD
EAITCERDGTTISHPADNCRNTPNSGQEDQDGDGIGDVCDGDIDDDGITNLRDNCEYVPN
RDQYDLDRDGVGDACDNCPHKRNSAQIDTDGDGQGDACDFDIDDDGIENLMDNCVYVYNF
DQTDSDKDGVGDMCDNCPLAYNPRQADRDSDGIGNDCDTNLDVDEDGVQNNLDNCPYIAN
SNQADHDKDGLGDACDPDDDNDGVNDHKDNCRLVVNPSQLDVDGNGRGDLCEGDFDDDGI
DDIMDACPMNAGISVTDFSKFDMVPLDPSGTVQLDPKWVVRHQGKELIQTVNCDPGLAIG
MDRFEAVDFSGTFFVNTGRDDDYAGFVFGYQSSSRFYVVMWKQVVNSTTGPGEALRNALW
HTGDTANQVRTLWYDPMQQGWKDLVAYRWTLQHRPETGFIRVTMYEGKKLLVDSGPIYDK
TYAGGRLGMFIFSQEMVFFSDMEYSCKGKHGSLSSGVGNIRALSPGMKSPLKALKSRLVC
VS
Nucleotide sequence
Length: 3,609
>Phmamm.CG.MTP2014.S46.g01759.01.t
ATGATGACCCGTTTGGCGAATTCCATCGGAAAGGGAGCGCCACTGGATCGCACGGTAAAA
CGCGACCAAACGGCCCCGGATCATTTTATGCCGGCTTATAAATTTAAACGAGTGTTGGGC
AATAATGACCTGGTTTCCGTCGAAACTCGTTTTACCACTCTGGCAGCATCCCTTGCACAG
AGCACCGGATTCGTCTTCATCGCCACATTGAAGCAGCCACCAAAGAACGTCGGCACAATC
GTCAGCGTCACGCCTAAACGTTCGGCGTCGTCGCTGCCGACAGCGTACTTTGCAATCGTG
AGCGACACCAAAACCGACCGAGTCGACCTGCATTACGGCATTGGCGACAATAAACACGTC
GCCCGCTTTGAATCGGCAGGTGTGTTCCAGGACGCGATGTTGTGGTCAAATTTCACCCTG
GAAGTGTACAAAGACACTGCGAGTCTTTTCGTCAACTGCCAACTCATCGGATCGCGCCGT
CTTGAAACTCGTTTTTACCGCATCCTGGATTCGAGGGAAAGTCAACTTCGTCTCGCAAAC
GCTTACGACCACACAACTGCCGATTTTCGGGGTTCTATGCAGAAAGTGCGATTTCTAGTC
GGCAACGTTTCCGCACAAGAAACTATGAACAGTCACTTCGCGTGCGCCACCGACAAACCA
TCGGAAAGTACCGAAGAAACCCAAACGGCACCAGCAAATTCACCCTTCGGCGGCGGTGGC
AGCTACAGCTGGGCCAGGGATATCGTCCTGCAAGTTCTGCGCAACGAGTGCAACTTTTCC
TGCAGCGCGGAACTTCGTAGCCCGGGACTCCGTGACACAGAATTTGGCTCGTGTTGGATG
GACGACACTCGCTACGGGGATGGCGACACTTGGGAACGAGACGACTGTACCAACTGCACC
TGTCAAAATTCAAGAATTCAATGCACAGATATTCAATGTCCTGTCCTGAATTGCATCGAT
ATTGTTCACACCAAGGGACAGTGTTGCCCAAGTTGTCCTGGTAAGTTTCCTAACATTGCA
TTCAATGTGTATTCGCCAATTTATGTCAACTTAGCATTGTTTGTGTTTACGTTTCACGAT
GCTATTTACTATCGCGCGCGTAGGGCACACCTTATTCGGTTAAGTTTTCTACCTTATGGT
CACGGTTTGGACTTCATCATTGCTGTTTGGATTACAGAGAGCGCAAAGGGATTCTCACCA
TGGTCAGGATGGTCCGAGTGTTCTGTTACTTGCGGCATTGGACATGAAACCAGAGGTCGT
TCCTGTGATCGCGTATATTTTGATTGTGACGGTCCATCTATGCAGAGTCGAAATTGCATT
CGCGAACCCTGCAACGTTAAAGTGCGACGAGATGGTGGATGGTCTCCATGGACTAAATGG
TCACCATGCAGTGTCACATGCGGAAAAGGCCGAACCACGAAAATCCGAAGCTGTAACTCT
CCTCTGCCACAGCTAGATGGCGCTCAGTGCGTCGGGCCTGACCGCAAAACACGCGACTGC
AAAATGTCTCCATGTCCAGTCGATGGTGGATGGGGCGAATGGAGCGTCTGGAGTGAATGT
AGCGCGACATGCGATGATGGGTTCAAGACGCGGAGCCGTAAATGCAACAATCCCAAACCC
CGATTTGGTGGAAAGCAATGCTCCGGTGATAGCAAAGCAACTGAACACTGCTTGGTGAAA
GCATGTCCCATCGACGGCTGCCTGTCTAGCCCTTGTTATCCTGGAGTGGAATGCAGTTCG
TACGATGATGGCTCATTTGTTTGCGGCGCATGTCCCGAAGGAACGCAGGGTGATGGAACA
CAATGCGAAGACATCGATGAGTGTACCTTGGTGCCGAATGCCTGCTTCCATGCTAATGGT
GTCCACCGCTGTCAGAACCACTTCGCCGGGTACACTTGCCTTGCCTGTCCTGATGGCTAC
AAAGGTGATAGGCCGTCGGGCGTCGGAGCTGAGTACGCACTTGCGCACAAGCAGGTATGC
CGGGTCGTGAACCCGTGCACGGACGATGGCAACCCATGTCCCGATAACGCACGATGCATC
TTCCTTGGTCTTACCGTCACGCCGCCGTTCAAGTGCAAGTGTCTTCCGGGTTACGCAACG
GCCCCAGGATGCGAAGGCCTAGTCTGCGCGGATGACTCAGATTTAGACGGGGTCGCAGAT
GAAGCAATCACGTGCGAGAGAGACGGAACGACCATTTCACATCCAGCTGATAACTGCCGT
AATACTCCAAACAGTGGTCAAGAGGACCAGGACGGCGACGGCATAGGAGATGTTTGTGAT
GGTGATATTGATGATGATGGCATCACAAACCTGCGGGACAACTGCGAATATGTGCCGAAC
AGAGACCAGTACGACTTGGATCGCGACGGAGTGGGCGATGCCTGCGATAACTGCCCTCAT
AAACGTAACTCTGCCCAGATCGATACCGATGGTGATGGACAGGGTGATGCATGCGACTTC
GACATCGATGATGACGGCATTGAAAACCTGATGGATAACTGCGTTTACGTATACAACTTT
GACCAGACCGACAGCGACAAAGATGGTGTAGGGGACATGTGCGACAACTGCCCTCTCGCA
TATAACCCAAGACAGGCTGACCGTGACTCTGATGGTATTGGTAATGACTGTGACACAAAT
CTGGATGTTGATGAAGACGGAGTTCAAAATAATCTTGACAATTGCCCATATATTGCAAAC
TCCAACCAGGCTGACCACGACAAAGACGGACTGGGCGATGCATGCGATCCCGATGATGAC
AACGATGGTGTGAACGATCACAAGGACAACTGTAGACTGGTTGTCAATCCAAGCCAACTT
GATGTTGATGGCAACGGACGTGGAGACCTATGCGAAGGAGACTTTGATGACGATGGTATT
GATGACATAATGGACGCTTGTCCTATGAATGCTGGCATCAGCGTCACCGATTTCAGCAAG
TTTGATATGGTTCCTCTTGATCCCAGCGGCACAGTCCAACTCGATCCTAAATGGGTTGTC
AGACATCAAGGCAAAGAACTCATTCAGACCGTGAACTGTGATCCAGGACTTGCAATTGGA
ATGGATCGATTTGAGGCTGTTGACTTTAGTGGAACGTTTTTCGTTAACACTGGTCGGGAC
GATGACTACGCAGGTTTCGTATTTGGCTACCAATCATCCAGTCGGTTCTATGTCGTTATG
TGGAAACAGGTGGTGAACTCCACAACCGGTCCCGGGGAGGCACTGAGAAACGCCCTTTGG
CATACAGGAGACACAGCAAACCAGGTGCGCACTCTGTGGTACGACCCTATGCAGCAGGGA
TGGAAAGACTTGGTAGCGTACAGATGGACCCTTCAGCATCGTCCGGAGACCGGTTTTATT
AGGGTGACCATGTATGAGGGCAAGAAGTTGCTCGTTGACTCCGGGCCGATTTACGACAAG
ACCTACGCCGGCGGTCGGCTGGGAATGTTCATCTTCTCACAGGAGATGGTGTTCTTTTCA
GACATGGAATACTCATGCAAAGGTAAGCACGGAAGCCTGTCGTCTGGAGTCGGCAATATA
CGTGCCTTAAGCCCTGGTATGAAAAGCCCTCTCAAGGCACTTAAATCTCGATTGGTTTGC
GTTTCGTGA
| SMART |
Laminin_G (IPR001791) - T[26-202] 7.1E-5 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[27-208] 1.25E-17 - T[976-1167] 6.33E-91 |
| PANTHER |
Thrombospondin (IPR037349) - T[31-226] 0.0 - T[250-334] 0.0 - T[394-446] 0.0 - T[538-1167] 0.0 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[276-333] 11.4 |
| SMART |
VWF_dom (IPR001007) - T[278-332] 2.7E-9 |
| Pfam |
VWF_dom (IPR001007) - T[278-332] 5.3E-10 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[296-332] . |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[395-444] 9.4E-11 - T[450-505] 7.0E-18 - T[506-562] 1.4E-19 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[396-445] 11.275 - T[451-506] 13.703 - T[508-563] 13.997 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[398-444] 1.96E-9 - T[450-505] 5.1E-14 - T[504-562] 1.83E-15 |
| SMART |
TSP1_rpt (IPR000884) - T[398-445] 3.2E-9 - T[454-506] 9.7E-15 - T[511-563] 3.5E-15 |
| Pfam |
TSP1_rpt (IPR000884) - T[399-444] 6.9E-9 - T[455-505] 3.0E-14 - T[512-562] 5.4E-12 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[563-603] 9.021 - T[604-646] 7.439 - T[662-705] 11.416 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[563-603] 0.047 - T[604-661] 2.3E-5 |
| SMART |
EGF-like_dom (IPR000742) - T[566-603] 1.1 - T[607-661] 31.0 - T[665-705] 0.01 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[604-641] 2.6E-6 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[692-704] . |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[711-747] 11.484 - T[748-783] 16.762 - T[784-806] 11.125 - T[807-842] 16.567 - T[843-865] 12.074 - T[866-903] 14.05 - T[904-939] 16.926 - T[940-975] 14.719 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[714-796] 5.62E-12 - T[773-855] 1.02E-17 - T[853-974] 4.32E-36 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[748-783] 7.0E-11 - T[785-806] 0.0034 - T[808-842] 1.9E-9 - T[843-865] 0.0063 - T[867-903] 2.3E-10 - T[905-939] 3.1E-8 - T[941-972] 1.1E-8 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[785-854] 5.3E-22 - T[855-976] 6.3E-44 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[979-1171] 83.799 |
| Pfam |
Thrombospondin_C (IPR008859) - T[1064-1167] 1.8E-47 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 61.049 % | 941 | 0 |
| TSP2_HUMAN | 46.539 % | 977 | 0 |
| TSP3_HUMAN | 48.512 % | 541 | 6.41E-175 |