- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S46.g01759.02.t
Possible name(s)
THBS1; THBS2; THBS3
Gene model
Location
S46 [199,402 / 212,784]
Amino acid sequence
Length: 1,120
>Phmamm.CG.MTP2014.S46.g01759.02.p
APLDRTVKRDQTAPDHFMPAYKFKRVLGNNDLVSVETRFTTLAASLAQSTGFVFIATLKQ
PPKNVGTIVSVTPKRSASSLPTAYFAIVSDTKTDRVDLHYGIGDNKHVARFESAGVFQDA
MLWSNFTLEVYKDTASLFVNCQLIGSRRLETRFYRILDSRESQLRLANAYDHTTADFRGS
MQKVRFLVGNVSAQETMNSHFACATDKPSESTEETQTAPANSPFGGGGSYSWARDIVLQV
LRNECNFSCSAELRSPGLRDTEFGSCWMDDTRYGDGDTWERDDCTNCTCQNSRIQCTDIQ
CPVLNCIDIVHTKGQCCPSCPESAKGFSPWSGWSECSVTCGIGHETRGRSCDRVYFDCDG
PSMQSRNCIREPCNVKVRRDGGWSPWTKWSPCSVTCGKGRTTKIRSCNSPLPQLDGAQCV
GPDRKTRDCKMSPCPVDGGWGEWSVWSECSATCDDGFKTRSRKCNNPKPRFGGKQCSGDS
KATEHCLVKACPIDGCLSSPCYPGVECSSYDDGSFVCGACPEGTQGDGTQCEDIDECTLV
PNACFHANGVHRCQNHFAGYTCLACPDGYKGDRPSGVGAEYALAHKQVCRVVNPCTDDGN
PCPDNARCIFLGLTVTPPFKCKCLPGYATAPGCEGLVCADDSDLDGVADEAITCERDGTT
ISHPADNCRNTPNSGQEDQDGDGIGDVCDGDIDDDGITNLRDNCEYVPNRDQYDLDRDGV
GDACDNCPHKRNSAQIDTDGDGQGDACDFDIDDDGIENLMDNCVYVYNFDQTDSDKDGVG
DMCDNCPLAYNPRQADRDSDGIGNDCDTNLDVDEDGVQNNLDNCPYIANSNQADHDKDGL
GDACDPDDDNDGVNDHKDNCRLVVNPSQLDVDGNGRGDLCEGDFDDDGIDDIMDACPMNA
GISVTDFSKFDMVPLDPSGTVQLDPKWVVRHQGKELIQTVNCDPGLAIGMDRFEAVDFSG
TFFVNTGRDDDYAGFVFGYQSSSRFYVVMWKQVSQTYWKNTPSRAQAFGALQVKVVNSTT
GPGEALRNALWHTGDTANQVRTLWYDPMQQGWKDLVAYRWTLQHRPETGFIRVTMYEGKK
LLVDSGPIYDKTYAGGRLGMFIFSQEMVFFSDMEYSCKDT
Nucleotide sequence
Length: 4,894
>Phmamm.CG.MTP2014.S46.g01759.02.t
GCGCCACTGGATCGCACGGTAAAACGCGACCAAACGGCCCCGGATCATTTTATGCCGGCT
TATAAATTTAAACGAGTGTTGGGCAATAATGACCTGGTTTCCGTCGAAACTCGTTTTACC
ACTCTGGCAGCATCCCTTGCACAGAGCACCGGATTCGTCTTCATCGCCACATTGAAGCAG
CCACCAAAGAACGTCGGCACAATCGTCAGCGTCACGCCTAAACGTTCGGCGTCGTCGCTG
CCGACAGCGTACTTTGCAATCGTGAGCGACACCAAAACCGACCGAGTCGACCTGCATTAC
GGCATTGGCGACAATAAACACGTCGCCCGCTTTGAATCGGCAGGTGTGTTCCAGGACGCG
ATGTTGTGGTCAAATTTCACCCTGGAAGTGTACAAAGACACTGCGAGTCTTTTCGTCAAC
TGCCAACTCATCGGATCGCGCCGTCTTGAAACTCGTTTTTACCGCATCCTGGATTCGAGG
GAAAGTCAACTTCGTCTCGCAAACGCTTACGACCACACAACTGCCGATTTTCGGGGTTCT
ATGCAGAAAGTGCGATTTCTAGTCGGCAACGTTTCCGCACAAGAAACTATGAACAGTCAC
TTCGCGTGCGCCACCGACAAACCATCGGAAAGTACCGAAGAAACCCAAACGGCACCAGCA
AATTCACCCTTCGGCGGCGGTGGCAGCTACAGCTGGGCCAGGGATATCGTCCTGCAAGTT
CTGCGCAACGAGTGCAACTTTTCCTGCAGCGCGGAACTTCGTAGCCCGGGACTCCGTGAC
ACAGAATTTGGCTCGTGTTGGATGGACGACACTCGCTACGGGGATGGCGACACTTGGGAA
CGAGACGACTGTACCAACTGCACCTGTCAAAATTCAAGAATTCAATGCACAGATATTCAA
TGTCCTGTCCTGAATTGCATCGATATTGTTCACACCAAGGGACAGTGTTGCCCAAGTTGT
CCTGAGAGCGCAAAGGGATTCTCACCATGGTCAGGATGGTCCGAGTGTTCTGTTACTTGC
GGCATTGGACATGAAACCAGAGGTCGTTCCTGTGATCGCGTATATTTTGATTGTGACGGT
CCATCTATGCAGAGTCGAAATTGCATTCGCGAACCCTGCAACGTTAAAGTGCGACGAGAT
GGTGGATGGTCTCCATGGACTAAATGGTCACCATGCAGTGTCACATGCGGAAAAGGCCGA
ACCACGAAAATCCGAAGCTGTAACTCTCCTCTGCCACAGCTAGATGGCGCTCAGTGCGTC
GGGCCTGACCGCAAAACACGCGACTGCAAAATGTCTCCATGTCCAGTCGATGGTGGATGG
GGCGAATGGAGCGTCTGGAGTGAATGTAGCGCGACATGCGATGATGGGTTCAAGACGCGG
AGCCGTAAATGCAACAATCCCAAACCCCGATTTGGTGGAAAGCAATGCTCCGGTGATAGC
AAAGCAACTGAACACTGCTTGGTGAAAGCATGTCCCATCGACGGCTGCCTGTCTAGCCCT
TGTTATCCTGGAGTGGAATGCAGTTCGTACGATGATGGCTCATTTGTTTGCGGCGCATGT
CCCGAAGGAACGCAGGGTGATGGAACACAATGCGAAGACATCGATGAGTGTACCTTGGTG
CCGAATGCCTGCTTCCATGCTAATGGTGTCCACCGCTGTCAGAACCACTTCGCCGGGTAC
ACTTGCCTTGCCTGTCCTGATGGCTACAAAGGTGATAGGCCGTCGGGCGTCGGAGCTGAG
TACGCACTTGCGCACAAGCAGGTATGCCGGGTCGTGAACCCGTGCACGGACGATGGCAAC
CCATGTCCCGATAACGCACGATGCATCTTCCTTGGTCTTACCGTCACGCCGCCGTTCAAG
TGCAAGTGTCTTCCGGGTTACGCAACGGCCCCAGGATGCGAAGGCCTAGTCTGCGCGGAT
GACTCAGATTTAGACGGGGTCGCAGATGAAGCAATCACGTGCGAGAGAGACGGAACGACC
ATTTCACATCCAGCTGATAACTGCCGTAATACTCCAAACAGTGGTCAAGAGGACCAGGAC
GGCGACGGCATAGGAGATGTTTGTGATGGTGATATTGATGATGATGGCATCACAAACCTG
CGGGACAACTGCGAATATGTGCCGAACAGAGACCAGTACGACTTGGATCGCGACGGAGTG
GGCGATGCCTGCGATAACTGCCCTCATAAACGTAACTCTGCCCAGATCGATACCGATGGT
GATGGACAGGGTGATGCATGCGACTTCGACATCGATGATGACGGCATTGAAAACCTGATG
GATAACTGCGTTTACGTATACAACTTTGACCAGACCGACAGCGACAAAGATGGTGTAGGG
GACATGTGCGACAACTGCCCTCTCGCATATAACCCAAGACAGGCTGACCGTGACTCTGAT
GGTATTGGTAATGACTGTGACACAAATCTGGATGTTGATGAAGACGGAGTTCAAAATAAT
CTTGACAATTGCCCATATATTGCAAACTCCAACCAGGCTGACCACGACAAAGACGGACTG
GGCGATGCATGCGATCCCGATGATGACAACGATGGTGTGAACGATCACAAGGACAACTGT
AGACTGGTTGTCAATCCAAGCCAACTTGATGTTGATGGCAACGGACGTGGAGACCTATGC
GAAGGAGACTTTGATGACGATGGTATTGATGACATAATGGACGCTTGTCCTATGAATGCT
GGCATCAGCGTCACCGATTTCAGCAAGTTTGATATGGTTCCTCTTGATCCCAGCGGCACA
GTCCAACTCGATCCTAAATGGGTTGTCAGACATCAAGGCAAAGAACTCATTCAGACCGTG
AACTGTGATCCAGGACTTGCAATTGGAATGGATCGATTTGAGGCTGTTGACTTTAGTGGA
ACGTTTTTCGTTAACACTGGTCGGGACGATGACTACGCAGGTTTCGTATTTGGCTACCAA
TCATCCAGTCGGTTCTATGTCGTTATGTGGAAACAGGTATCTCAGACTTACTGGAAGAAC
ACACCCAGCAGAGCACAGGCGTTTGGCGCCCTTCAAGTTAAGGTGGTGAACTCCACAACC
GGTCCCGGGGAGGCACTGAGAAACGCCCTTTGGCATACAGGAGACACAGCAAACCAGGTG
CGCACTCTGTGGTACGACCCTATGCAGCAGGGATGGAAAGACTTGGTAGCGTACAGATGG
ACCCTTCAGCATCGTCCGGAGACCGGTTTTATTAGGGTGACCATGTATGAGGGCAAGAAG
TTGCTCGTTGACTCCGGGCCGATTTACGACAAGACCTACGCCGGCGGTCGGCTGGGAATG
TTCATCTTCTCACAGGAGATGGTGTTCTTTTCAGACATGGAATACTCATGCAAAGACACG
TGAAGTCGACGGCTCGAACTGGAGGCTTACGGAAAAAATTCTGCAGCATTAACGCGCGAT
CCGCATCGCTTTTGATTGTATTGTCACGTGACCGGCGATCGATGGACGCATTGGATAGAG
ACCACCGGGCTTGTACTTTCTCAACGCATTTTCATTTTTTTCTTGTAACAGGGCGCAAAT
GCACTTTTCAATTACTTGTAGTTGTAAATTAAAATTGGCTTGTATTATATGTGGGTGGCC
AATTTGTATGCTATCGTCTTAATTGAACAATTTCAAACTTGTCCTTCCTTTCCCAGTTAC
TAACGTTTAGCACAGCACGCCCACTGTAGTTTATTTCGCTGCTGTCTAACACCAGTCCTT
TTTTACCTTTCTTCGACCGTTTGTTGTTTCTTGCCATGGATCAAACCAAAGGTATTTACC
CAACACTTCGTTTATTTCGTGGGTTTAATTTATTCAAAAACCTGTGTTTACATATGGCCG
ACGCTGCGCGTTTAAATGAACAATCTATATGAAGCATTTGCTATATAGCACAGCTTTTTG
ATGCTTTTAAAGCGTTTTTGTTGTTGTGTTTCCAGTATTTATTTCTCTTTCGTACGTCTT
TTTCGCTTGTTGGTTTTTAAACGAGACTTTGACCAATAAAATTAGTGCCTTAGTCAATGT
AATAAACTAAAATATTGTATGCAGTATTAATCAGCCAAAAAACAATTCCTAGCAAAGCCG
AGAAAAAAAAACCTTTTGGCAGCAATATTAGAAGAATTTCGTCAACAAACATTAAACTGG
CTCAAAGTCGACATTACCAGACCGTTTTGCCTTAAATTGTTTTCGAAAAACACGCCAAAC
ATTTGGCAATAAAAACTTAAATAATCAGCATACAAATCAATACAGTAATAATAAAAAAAT
ACGAGAACAAATCAAAATATAAAACAAAAATTTTTCGTCTAGTAAATCTTTGTCTATGAC
AGAAAAGGCTAAGAAAAATGGTTTCGCTAATAAGGCACTTTAACATTTCCAACAAATGGA
CTTTGCAAATACGCGACTGCCTTGTGTTTAACGCAGTTGCGTTCAATTTCATAGTTTCCG
CACAGAACGTAGTCATCGACAGATATTTCTTCCAGCATGTCCGACAAGTCAATATATCTA
CAACAAAAACCGATATAACACACAACAAAAAACGGTAAAAATGCATTTTTTATTGCTAAC
CCCATAGCTACAGCCTTGTTGAGGTGAAAAGCGTGATCCGCTGTGCGCGTGTGACCGGCG
ATTTTGCCATTCCGCCATATTGGTTCCTCGCCGAAAAGTTGAACCGGGCTAAAATATGAA
ATCGAACACGAATAAATGACTCATCGAGCTAATCTTAGTAATTAGTATATAACATACTCG
TTTATCGTAAAATATATGAAGCATTTTTTCGGCTGACTTTTGCCTAACTCAGTTAATGCA
TCAGATCCGATGTAATTACGATTGTCATCACACAAGTGGATCAGGCGCGCTTCAATCGGC
GAATCGTCTGTTCGTAAACTTCCACCCCAGTTGT
| SMART |
Laminin_G (IPR001791) - T[14-190] 7.1E-5 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[15-196] 1.56E-17 - T[905-1120] 8.7E-103 |
| PANTHER |
Thrombospondin (IPR037349) - T[24-214] 0.0 - T[238-375] 0.0 - T[467-1118] 0.0 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[264-321] 11.4 |
| Pfam |
VWF_dom (IPR001007) - T[266-320] 4.8E-10 |
| SMART |
VWF_dom (IPR001007) - T[266-320] 2.7E-9 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[284-320] . |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[324-373] 8.7E-11 - T[379-434] 6.5E-18 - T[435-491] 1.3E-19 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[325-374] 11.275 - T[380-435] 13.703 - T[437-492] 13.997 |
| SMART |
TSP1_rpt (IPR000884) - T[327-374] 3.2E-9 - T[383-435] 9.7E-15 - T[440-492] 3.5E-15 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[327-369] 8.11E-9 - T[379-434] 4.71E-14 - T[433-491] 1.7E-15 |
| Pfam |
TSP1_rpt (IPR000884) - T[328-373] 6.4E-9 - T[384-434] 2.8E-14 - T[441-491] 5.0E-12 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[492-532] 0.047 - T[533-590] 2.3E-5 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[492-532] 9.021 - T[533-575] 7.439 - T[591-634] 11.416 |
| SMART |
EGF-like_dom (IPR000742) - T[495-532] 1.1 - T[536-590] 31.0 - T[594-634] 0.01 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[533-570] 2.4E-6 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[621-633] . |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[640-676] 11.484 - T[677-712] 16.762 - T[713-735] 11.125 - T[736-771] 16.567 - T[772-794] 12.074 - T[795-832] 14.05 - T[833-868] 16.926 - T[869-904] 14.719 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[643-725] 5.62E-12 - T[702-784] 3.79E-18 - T[782-903] 3.66E-36 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[677-712] 6.3E-11 - T[714-735] 0.0034 - T[737-771] 1.7E-9 - T[772-794] 0.0058 - T[796-832] 2.1E-10 - T[834-868] 2.9E-8 - T[870-901] 9.8E-9 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[714-783] 4.9E-22 - T[784-905] 5.7E-44 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[908-1120] 97.239 |
| Pfam |
Thrombospondin_C (IPR008859) - T[922-1119] 1.5E-94 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 51.09 % | 1073 | 0 |
| TSP2_HUMAN | 49.738 % | 1043 | 0 |
| TSP3_HUMAN | 50.37 % | 578 | 0 |