- Transcript 'Boleac.CG.SB_v3.S216...' >
- Transcript 'KH2012:KH.S534.1.v1....' >
- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S470.g09109.01.t
Possible name(s)
DES; PRPH; VIM
Gene model
Location
S470 [100,343 / 107,594]
Amino acid sequence
Length: 494
>Phmamm.CG.MTP2014.S470.g09109.01.p
MSHQQSRRSYEERTSSYKRHFGDGPSRFTYKSKSPARKVSSTKNFRLSSSSSMGGAGPSR
MSGERVKVVRSTPVASGVTMRDINMMADSLGPDFQGMRVNEKEELQHLNSRFAGYISKVR
ALEQANKILEAQVEQLSASGPSRLGDMYEEELNRLRREVDSLTNQKENIQLQLENAAAEA
EKWKQKFDEEAAAKREMEEDLNDMRKDCDDATLVRLDLERRLETLQEELEFIKRMNEQEI
AELQEQVRNTEIKIESAPGPDLEELIDDMRMQYEKMAAKNRADAEQWYTEKVDNLQQQAS
RNDDALRSVRSEVSEYRKSVQTLNMEIDSLRGTNDSLQRTLGEMEDRYNRDTGDLQDTIN
NLQAECDDLKGQMAQHLRQYQELMDVKMALDIEIATYRKLLEGEESRVDAFGDERISDRV
SQIHTGTLKSSYAPMRKSYQKDDRLSRQDVDDVETVTTKKVVVKTIETKDGKVVSQTEDV
REQSTGDDHSHPTL
Nucleotide sequence
Length: 1,485
>Phmamm.CG.MTP2014.S470.g09109.01.t
ATGTCGCATCAGCAGTCAAGACGATCGTACGAGGAGCGAACCTCAAGCTACAAGCGTCAT
TTCGGAGATGGACCGTCCCGTTTCACTTACAAGTCCAAGTCACCAGCAAGAAAAGTCTCA
AGCACTAAAAATTTCAGACTGTCGAGCAGCTCATCAATGGGTGGGGCTGGTCCAAGCCGA
ATGTCGGGTGAAAGGGTAAAGGTCGTGAGGTCAACCCCAGTTGCGAGTGGCGTCACAATG
CGTGATATCAACATGATGGCTGATAGCCTTGGCCCGGACTTCCAGGGTATGCGTGTAAAC
GAGAAGGAAGAATTGCAACATTTGAATTCACGATTCGCGGGTTACATCTCCAAGGTTCGC
GCTCTCGAACAAGCGAACAAGATTTTGGAAGCTCAGGTCGAACAACTGAGCGCTTCTGGT
CCATCCAGACTCGGCGATATGTACGAGGAAGAACTAAACAGACTTCGTCGTGAAGTTGAT
TCTTTGACGAACCAGAAGGAAAACATTCAACTTCAACTGGAGAATGCCGCCGCTGAGGCT
GAAAAATGGAAGCAAAAATTCGACGAAGAAGCCGCAGCAAAACGTGAAATGGAGGAAGAT
CTAAACGACATGAGAAAAGATTGTGATGACGCAACTCTGGTGAGGTTGGATCTGGAAAGA
AGACTCGAAACTCTTCAGGAGGAGCTTGAATTCATCAAGAGAATGAACGAACAGGAAATC
GCCGAACTTCAGGAGCAAGTTCGCAACACAGAAATCAAAATAGAGTCCGCTCCTGGTCCG
GATTTGGAGGAACTGATTGATGACATGAGAATGCAGTATGAAAAGATGGCGGCGAAGAAC
AGAGCTGATGCTGAACAGTGGTACACTGAGAAGGTTGACAACTTGCAGCAGCAGGCTTCG
AGGAACGACGACGCCCTTCGTTCGGTTCGAAGTGAAGTCAGCGAATACAGAAAGAGCGTT
CAGACTCTTAACATGGAAATCGATTCCCTTCGTGGAACAAACGATTCCCTGCAACGTACA
CTTGGTGAAATGGAAGACAGATACAATAGAGACACAGGAGATTTGCAGGACACCATCAAC
AACTTACAGGCTGAGTGCGACGATTTGAAGGGACAAATGGCTCAACATTTGCGTCAGTAT
CAAGAACTGATGGACGTGAAAATGGCGCTCGACATAGAAATCGCAACTTACAGAAAATTG
TTGGAGGGAGAAGAATCAAGAGTTGATGCGTTTGGAGATGAAAGAATTTCGGATCGTGTC
AGTCAAATTCACACTGGTACACTCAAGTCTAGCTACGCTCCAATGAGAAAAAGTTACCAG
AAGGACGACCGTCTGTCACGTCAGGATGTTGATGACGTCGAAACTGTGACGACAAAGAAG
GTTGTTGTGAAGACAATTGAGACCAAGGATGGAAAGGTTGTCAGTCAGACCGAAGATGTG
CGTGAACAATCAACAGGAGATGACCACAGCCACCCGACCCTGTAA
| PANTHER |
IF (IPR001664) - T[43-488] 2.2E-136 |
| PRINTS |
Keratin_I (IPR002957) - T[176-189] 3.3E-16 - T[197-220] 3.3E-16 - T[250-270] 3.3E-16 - T[322-337] 3.3E-16 - T[348-374] 3.3E-16 |
| Pfam |
OMP_efflux (IPR003423) - T[293-382] 8.3E-5 |
| ProSitePatterns |
Intermediate_filament_CS (IPR018039) - T[394-402] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VIME_HUMAN | 42.184 % | 353 | 1.17E-117 |
| GFAP_HUMAN | 37.333 % | 287 | 1.78E-92 |
| DESM_HUMAN | 41.701 % | 290 | 8.87E-93 |