- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S473.g09135.01.t
Possible name(s)
DDX39B
Gene model
Location
S473 [17,639 / 20,368]
Amino acid sequence
Length: 431
>Phmamm.CG.MTP2014.S473.g09135.01.p
LKPNTTMTDADILLDYEEDEHETTNDLVPGKDQKKDVKGTYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLV
MCHTRELAFQISKEYERFSKYMSTIKVAVFFGGLPITKDQATLKSNCPHIVVGTPGRLLA
LIRSNSLNLKNIKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQVMMFSATLSKDIRPV
CKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQ
RCMALAELLKEQNFPAIDIHRAMNQEERLSRYQLFKNFERRILVATNLFGRGMDIERVNI
VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNDVQDRFEVNVTELPDEI
DISAYSKNIVG
Nucleotide sequence
Length: 1,296
>Phmamm.CG.MTP2014.S473.g09135.01.t
TTAAAACCTAACACAACAATGACTGATGCAGACATTCTGTTAGATTATGAGGAAGATGAA
CATGAAACCACCAATGACTTAGTTCCAGGAAAAGATCAGAAGAAAGATGTGAAGGGAACA
TATGTGTCCATTCACAGTTCTGGTTTTAGAGATTTTCTACTTAAGCCAGAACTACTTCGT
GCCATTGTGGACTGTGGTTTTGAACATCCCTCTGAAGTTCAAAATGAGTGTATTCCACAA
GCTGTACTTGGCATGGATGTGCTGTGCCAAGCAAAATCTGGAATGGGTAAAACTGCAGTT
TTTGTGTTGGCAACATTACAGCAACTGGAACCTGTGGATGGTCAGGTTTCGGTCTTGGTA
ATGTGCCACACACGAGAACTGGCTTTCCAGATCAGCAAAGAATATGAGAGGTTTTCCAAA
TATATGTCCACTATTAAGGTTGCAGTGTTTTTTGGTGGTCTTCCAATCACTAAAGACCAA
GCAACATTGAAAAGCAATTGCCCTCATATTGTTGTTGGTACACCTGGACGCCTACTTGCT
CTTATCAGATCAAACTCCCTAAACCTAAAAAATATCAAGCACTTTATTTTGGATGAATGT
GATAAAATGTTGGAGCAGCTAGATATGCGCAGAGATGTGCAAGACATCTTTCGTTTGACA
CCCCATGAGAAGCAAGTGATGATGTTTAGTGCAACGCTGAGCAAAGACATACGTCCAGTG
TGCAAGAAGTTCATGCAAGATCCGATGGAGGTTTATGTTGATGATGAAGCAAAGCTCACT
CTACATGGACTCCAACAGCATTATGTTAAGTTAAAGGATAATGAGAAGAACAGGAAATTG
TTTGATTTGCTTGATGCACTAGAGTTCAACCAGGTTGTCATCTTTGTGAAGTCTGTACAA
AGATGCATGGCTTTGGCTGAGCTCTTGAAAGAACAAAACTTTCCAGCCATTGACATTCAC
AGGGCTATGAACCAAGAGGAACGCCTCAGCCGATATCAACTTTTCAAGAATTTTGAACGT
CGTATCTTGGTGGCAACCAACCTATTTGGGAGAGGCATGGACATTGAAAGAGTCAACATT
GTTTTCAACTATGACATGCCCGAGGACTCCGACACCTACCTCCACAGAGTTGCTCGTGCA
GGAAGATTTGGTACCAAGGGTCTGGCAATCACATTTGTTTCTGATGAAACTGATGCCAAA
ATTTTAAACGATGTTCAAGACCGCTTTGAAGTCAATGTAACTGAACTGCCTGATGAAATC
GACATCTCTGCATACAGTAAGAACATAGTTGGATAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[47-75] 9.45 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[66-267] 2.4E-53 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[72-237] 1.6E-38 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[78-251] 27.51 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[116-399] 4.79E-64 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[263-424] 21.484 |
| CDD |
Helicase_C (IPR001650) - T[266-392] 1.73659E-36 |
| Pfam |
Helicase_C (IPR001650) - T[276-384] 2.1E-23 |
| SMART |
Helicase_C (IPR001650) - T[303-384] 3.9E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IF4A3_HUMAN | 37.26 % | 254 | 1.03E-80 |
| DX39B_HUMAN | 86.603 % | 748 | 0 |
| DX39A_HUMAN | 83.649 % | 737 | 0 |