Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S485.g09306.01.t

Possible name(s)

RDH11; RDH12; RDH14

Gene model

Phmamm.CG.MTP2014.S485.g09306

Location

S485 [116,380 / 120,335]

Sequences

Amino acid sequence

Length: 371

>Phmamm.CG.MTP2014.S485.g09306.01.p
MPTNTRSASGSWVRSDIKLTGKTVIITGANTGIGLETAIDLVKREARVIIACRSLERGGD
AKNRILEETNCDEEKVVVKQLDLSSFESVRKFAADVNASEERLDILINNAGIMGSSVKKT
SDGFEINVGVNHLGHFLLTNLLLDLIKRSAPARIVVVSSEAHKQAKRIQWDKLNTENSSS
SFGKYAESKLMNILFVKELVVRLEASGSWVRSNVTLTGKTVVITGANTGIGLETAIDLVK
RDARVIIACRSLERAGEAKGRVIKETECDDSKIIVKHLDLSSFDSIKQFAADINETEERL
DILINNAGKTKDGFEIQFGVNHLGHFLLTNLLLDLIKVCDHTTTIVTYAVETNNPILQLT
EFSCVTTCLDY

Nucleotide sequence

Length: 1,116

>Phmamm.CG.MTP2014.S485.g09306.01.t
ATGCCTACGAACACGAGGTCAGCATCGGGTAGCTGGGTGAGAAGTGACATCAAGTTGACT
GGGAAGACTGTGATAATCACAGGAGCTAACACAGGTATCGGCCTTGAAACGGCAATAGAT
TTGGTCAAGAGAGAAGCACGGGTGATAATTGCTTGCAGAAGCCTAGAACGAGGTGGTGAT
GCAAAAAACAGGATATTAGAGGAAACAAATTGTGATGAAGAGAAAGTGGTCGTCAAACAG
TTAGACCTTTCGTCATTTGAATCTGTCAGAAAGTTTGCAGCCGACGTCAATGCTTCTGAG
GAAAGGCTTGACATACTCATAAACAATGCAGGTATCATGGGAAGTTCCGTGAAGAAAACA
AGTGATGGATTTGAAATAAATGTCGGAGTTAACCATCTTGGTCATTTTCTGTTGACCAAT
CTCTTACTCGACCTGATTAAGAGGAGTGCTCCAGCCCGAATCGTTGTTGTTTCCTCGGAA
GCACATAAACAGGCAAAGCGCATACAGTGGGATAAGTTAAACACAGAAAACAGCTCGAGT
TCGTTCGGAAAGTATGCTGAGAGCAAGCTAATGAACATTCTCTTCGTAAAGGAGCTGGTT
GTACGTCTTGAAGCATCAGGCAGTTGGGTGAGAAGCAACGTTACGTTAACTGGAAAGACG
GTAGTAATCACAGGAGCCAACACTGGCATTGGTCTTGAAACGGCAATTGATTTGGTCAAG
AGAGATGCAAGAGTAATTATAGCTTGCAGAAGCCTGGAACGTGCCGGTGAAGCAAAAGGC
AGGGTTATAAAAGAAACGGAATGTGACGACTCCAAAATTATTGTGAAACATTTGGACCTT
TCGTCATTCGATTCAATTAAACAATTTGCTGCTGACATCAATGAAACTGAAGAAAGGCTC
GACATTCTCATTAACAATGCAGGGAAAACAAAAGACGGTTTTGAAATCCAGTTCGGAGTG
AACCATCTTGGCCACTTTCTCTTAACCAACCTGTTGCTCGATTTGATTAAGGTTTGTGAC
CACACAACTACGATTGTTACGTATGCTGTTGAAACAAATAACCCTATACTGCAGTTGACC
GAGTTTTCATGTGTTACCACTTGCCTAGATTACTAA

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[19-207] 2.64E-41 - T[215-346] 3.74E-30
Pfam	SDR_fam (IPR002347) - T[22-164] 3.3E-25 - T[219-346] 8.3E-19
PRINTS	SDR_fam (IPR002347) - T[23-40] 4.7E-10 - T[101-112] 4.7E-10 - T[146-162] 4.7E-10 - T[185-204] 4.7E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	50.777 %	169	8.14E-50
RDH14_HUMAN	49.246 %	161	2.07E-46
RDH12_HUMAN	49.515 %	171	1.92E-50