- Transcript 'Phmamm.CG.MTP2014.S3...' >
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- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S4899.g18600.02.t
Possible name(s)
GIN1; NYNRIN
Gene model
Location
S4899 [80 / 5,830]
Amino acid sequence
Length: 1,199
>Phmamm.CG.MTP2014.S4899.g18600.02.p
MSLLNNANQPQVSPQATSTPLRSEYRSFESRPNRNYAGKTKYVPVSKSRFPPPRDQPAPH
QLCYFHALYGMEARRSFSWKFLVCAVRQPILGADFLHHYDLLIDTRRRILIPRSCTNIGK
STLSTKRKEPVKRTQESNHYTEAREFKVITDHKPLISAFRSVSENQSPRQIRHFDFIAQF
TDQIEYITGIHNVVADSLSRVEVNTITLPSNTFSLEELAIEQQNESFLSEVNEQCISLKV
VHRLVPDTEVTIIGDISTGSFRPIVPRKLRKKVFLALHGLAHPGFKGTKQLISERFVWHG
MKNDVQDPPPHGATGKGFKSFGEKRLSVDFNLSRSFSWKFLVCADSLSRVEVNTITLPSN
TFSLEELAIEQQNESFLSEVNEQCISLKVVHRLVPDTEVAIIGDISTGSFRPIVPRKLRK
KVFLALHSLAHPGFKGTKQLISERFVWHVMKNDVQDWCKSCIPCQKSKVTIHNRAPLGRY
LEPEGRFTDLSIDIVGPLPACNGYSYLLTVVCRWTRWFTAIPLKDITASTCADAFILNWI
SIFGCPLRISTDRGAQFTSSLWSDLCNMPPPPPEGRFTDLSIDIVGPLPACNGYSYLLTV
VCRWTRWFTAIPLNDITASTCADAFILNWISIFGCPLRISTDRGAQFTSSLWSDLCNMLG
AKLQQTTAYHPASNGYIERQHRTLKAALRAQEYPNDWYSNLGLILLSLRATVKSDISCSP
AELVLGNTLRLPGEFFEEPIPGISKVEYAQRLSKFISNMKFIPPRINPPIRSHLDPELKK
CSHVFVKVAANKGPLYSHYDGPFKVIERHNKYYVLAMWGRTNSVSIDRLKVCYLPSEINV
TTNSNDPLICPDIIEGRSEGSETAATPDIEVDRTTESSTTAPTPPSPIIKTRTGRVVRRP
LRXEEWKRTLSAPLIGRLLQKSDTLYSTNNQIKIEYKWPTSNVGSVNNAILTKSTIYYDP
INKKLRSALGIMSSCNVHQGFCSVGTRTFVWSVPKNVDCAITYPIGTHEMIQHHGDSVNQ
PRRLEIPDLGLSIHHTFECPKEVASCSSPHAFCAGGIIVVPKNCTINTKRNRLDIMQRSQ
KDGVQGLILNEATDALITSITNMTNDIHYVECQIQSLLSTVYSLLSRQYPGEIISQVLGG
HRAAITTSDLMTEITCEEINGTILHSLRHGDLFATRPLIEYIDSTGTRIKNSLYSTTTH
Nucleotide sequence
Length: 3,600
>Phmamm.CG.MTP2014.S4899.g18600.02.t
ATGTCATTACTGAACAATGCAAACCAACCTCAAGTAAGTCCGCAGGCTACTTCTACACCC
TTACGGTCGGAATATAGATCATTTGAATCTCGTCCGAATCGTAACTATGCTGGAAAAACT
AAATATGTTCCAGTATCTAAAAGCAGATTTCCTCCACCGAGAGATCAACCTGCGCCGCAT
CAGTTGTGCTACTTTCATGCTCTCTACGGAATGGAAGCCAGGAGATCTTTCAGCTGGAAA
TTTTTGGTCTGTGCAGTTCGCCAACCCATTCTTGGTGCTGACTTTCTGCATCACTACGAT
CTGTTGATTGATACCAGAAGAAGGATTCTTATTCCACGAAGCTGCACTAATATCGGCAAA
TCAACACTCTCGACCAAGCGTAAAGAACCAGTAAAAAGAACCCAGGAATCGAATCATTAC
ACTGAGGCACGCGAATTCAAAGTGATAACTGATCACAAACCTCTGATCAGTGCTTTTCGA
TCTGTGTCTGAAAATCAGTCTCCTCGACAGATTCGACATTTCGATTTTATAGCTCAGTTT
ACAGATCAGATAGAATACATCACTGGAATTCACAATGTTGTTGCAGATTCGCTGTCTAGA
GTTGAAGTGAACACCATTACACTTCCCTCCAATACTTTTTCTTTAGAGGAACTAGCCATT
GAACAACAGAATGAGTCATTTTTATCTGAAGTTAACGAACAATGTATTTCTTTGAAGGTT
GTGCACAGACTTGTTCCCGACACTGAAGTTACAATAATCGGTGACATTTCAACGGGATCG
TTTAGGCCAATCGTACCAAGAAAACTACGGAAAAAGGTTTTCTTGGCCCTTCATGGCCTG
GCTCATCCCGGATTCAAAGGAACCAAACAACTTATAAGCGAACGATTTGTTTGGCATGGA
ATGAAGAATGACGTCCAGGATCCCCCCCCCCACGGTGCTACAGGAAAAGGTTTTAAATCG
TTTGGTGAAAAACGTTTGTCTGTCGATTTTAATCTTTCCAGATCTTTCAGCTGGAAATTT
TTGGTCTGTGCAGATTCACTGTCTAGAGTTGAAGTGAACACCATTACACTCCCCTCCAAT
ACTTTTTCTTTAGAGGAACTAGCCATTGAACAACAGAACGAGTCATTTTTATCTGAAGTT
AACGAACAATGTATTTCTTTAAAGGTTGTGCACAGACTTGTTCCTGACACCGAAGTTGCG
ATAATCGGTGACATTTCTACGGGATCGTTTAGGCCAATCGTACCAAGGAAACTACGGAAA
AAGGTTTTCTTGGCCCTTCATAGCCTGGCTCATCCCGGATTCAAAGGAACCAAACAACTG
ATCAGCGAACGATTTGTTTGGCATGTGATGAAGAATGACGTCCAGGACTGGTGCAAATCA
TGTATTCCTTGTCAGAAAAGTAAGGTGACAATTCACAATCGAGCTCCTCTTGGAAGGTAT
TTAGAACCTGAAGGTAGATTCACTGATTTGTCAATAGATATTGTTGGACCATTGCCCGCA
TGTAACGGTTATTCCTATCTTCTAACTGTTGTTTGTCGATGGACTAGATGGTTCACAGCA
ATCCCTCTGAAGGATATCACCGCCAGTACTTGTGCCGACGCATTTATTCTGAATTGGATA
TCTATATTTGGTTGTCCCCTCAGGATTTCCACCGACAGAGGCGCCCAGTTCACCTCTTCG
TTATGGTCAGATCTTTGCAACATGCCCCCCCCCCCACCTGAAGGTAGATTCACTGATTTG
TCAATAGATATTGTTGGACCATTACCCGCATGTAACGGTTATTCCTATCTTCTAACTGTT
GTTTGCCGATGGACTAGATGGTTCACAGCAATCCCTTTGAACGATATCACCGCCAGTACT
TGTGCCGATGCATTTATTCTGAATTGGATATCTATATTTGGTTGTCCCCTCAGAATTTCC
ACCGACAGAGGCGCCCAGTTCACCTCTTCGTTATGGTCGGATCTTTGTAACATGTTAGGA
GCAAAACTTCAACAAACTACAGCTTACCATCCCGCAAGCAATGGGTACATCGAACGCCAA
CATCGCACTTTGAAGGCAGCCCTGCGAGCTCAAGAATATCCGAATGACTGGTATTCAAAT
TTAGGATTGATCCTACTGAGTTTAAGAGCAACAGTAAAATCTGACATCAGTTGCAGTCCT
GCTGAACTTGTTTTAGGAAATACTTTGCGTTTACCAGGAGAGTTCTTTGAAGAACCTATT
CCGGGAATATCAAAGGTTGAGTATGCACAACGGCTATCGAAATTCATTTCTAATATGAAA
TTTATACCACCTAGAATTAACCCTCCTATCAGATCTCATTTAGATCCGGAACTGAAGAAG
TGTTCCCACGTGTTCGTCAAAGTGGCTGCCAACAAAGGTCCTTTGTATAGCCATTATGAT
GGGCCGTTCAAAGTTATTGAACGGCACAATAAGTATTACGTTTTAGCCATGTGGGGACGT
ACGAATTCTGTTTCTATTGATAGACTAAAAGTCTGTTATTTACCCTCAGAAATAAATGTA
ACTACTAATTCTAATGATCCTTTAATTTGTCCAGATATTATTGAAGGCAGATCTGAAGGA
AGCGAAACAGCCGCGACGCCCGATATCGAGGTTGATCGAACAACAGAATCATCAACCACT
GCACCTACACCTCCTTCACCAATCATCAAAACCCGAACCGGTCGAGTTGTCAGACGACCA
CTCAGATNTGAAGAATGGAAACGTACTTTATCTGCACCACTTATCGGCAGATTGTTGCAA
AAAAGCGATACATTGTATTCTACTAACAATCAAATAAAAATAGAATACAAATGGCCAACT
AGCAACGTGGGGTCAGTCAACAACGCTATACTGACCAAGTCGACTATTTATTATGATCCC
ATCAACAAAAAGCTTCGTAGCGCTTTGGGGATTATGTCAAGCTGCAACGTCCATCAAGGT
TTTTGCAGTGTAGGAACTCGTACTTTCGTTTGGTCAGTTCCTAAAAACGTCGACTGTGCC
ATTACATATCCCATAGGCACCCACGAGATGATCCAGCATCACGGCGATTCCGTGAATCAA
CCTCGACGCCTCGAAATACCCGATCTTGGCCTCAGCATTCACCACACTTTTGAATGTCCC
AAGGAGGTTGCATCTTGCTCCTCCCCGCACGCTTTTTGTGCCGGAGGAATTATCGTTGTA
CCTAAAAACTGTACTATCAACACAAAGAGGAATCGGCTGGACATTATGCAACGTTCGCAG
AAAGACGGAGTTCAAGGTCTAATCCTGAACGAAGCTACCGATGCTTTGATAACCAGCATC
ACAAACATGACGAACGACATACACTATGTAGAGTGCCAAATTCAGTCTCTACTATCAACG
GTCTACTCACTGCTGTCCCGTCAATATCCTGGCGAAATCATTAGCCAAGTACTTGGAGGA
CATCGAGCAGCAATCACAACATCCGACCTAATGACCGAAATCACCTGCGAAGAAATCAAT
GGAACAATTCTTCATAGCCTTCGCCATGGTGACCTTTTCGCTACAAGGCCACTAATCGAA
TACATCGACTCAACCGGAACAAGAATAAAGAATTCGTTGTATTCGACAACTACACATTGA
| Gene3D |
RNaseH_sf (IPR036397) - T[476-569] 5.2E-23 - T[580-711] 1.1E-63 |
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[478-567] 1.23E-19 - T[571-723] 1.39E-34 |
| ProSiteProfiles |
Integrase_cat-core (IPR001584) - T[479-567] 10.607 - T[568-740] 19.802 |
| Pfam |
Integrase_cat-core (IPR001584) - T[492-567] 9.3E-9 - T[582-686] 1.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|