Aniseed - Transcript Card

Clone 'cien181441' >
Transcript 'Phmamm.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S48.g01824.01.t

Possible name(s)

LHX1; LMX1A; LMX1B

Gene model

Phmamm.CG.MTP2014.S48.g01824

Location

S48 [214,467 / 216,802]

Sequences

Amino acid sequence

Length: 395

>Phmamm.CG.MTP2014.S48.g01824.01.p
MVMRVTDSSYVYHVACFACAMCKRLLRKGDEFIFNNDGPITVGGRRNCLELQCKSCWVQR
KDRCDEIMESSQFASNGGNSPNITTVSPGPHSDVTDSLLSPKSLMCAMSPSKSDDDEGMS
SDDDSTSGQLNSSKEENGEERKRSRDGDDIDSKDSKRSKRPRTILNAVQRRAFKAAFEVT
PKPCRKVRETLAKDTGLTVRVVQVWFQNQRAKMKKLAKRQQSQEAAAQKAREEFGFRGFD
PMNPMLHHHLPHMMHDNKSMMDASMYGYMGVPQGLPQGMPFTPIQCEQQQMGFPTNSFND
GIYYEGVPNMNVTSPSSNDCVPNQHLIGCHPQINQMTTTANNINMCSGNVLMPNGPNREI
PTENDVMAVSPIRHSSGAITPIDSLYTMQNHYFNS

Nucleotide sequence

Length: 1,188

>Phmamm.CG.MTP2014.S48.g01824.01.t
ATGGTGATGCGGGTGACCGACTCATCGTATGTCTACCACGTCGCCTGTTTCGCCTGTGCA
ATGTGCAAACGACTTTTGCGAAAAGGCGATGAGTTTATTTTCAACAATGACGGTCCGATT
ACTGTTGGTGGAAGGCGAAATTGCTTGGAACTTCAATGCAAATCTTGTTGGGTACAACGC
AAGGATAGGTGCGATGAAATAATGGAAAGTTCTCAGTTTGCCTCTAACGGTGGAAACTCG
CCAAACATCACAACCGTATCACCTGGACCTCACAGTGATGTCACGGATTCTCTTCTGTCG
CCGAAAAGCTTGATGTGTGCCATGTCTCCGTCTAAAAGTGATGACGACGAAGGAATGTCG
TCTGATGACGATTCAACATCCGGGCAGTTAAATTCGTCAAAGGAAGAAAATGGGGAAGAG
CGAAAAAGATCACGTGATGGTGACGACATCGACTCGAAAGACAGCAAAAGATCGAAACGA
CCTCGAACAATTTTAAACGCGGTCCAACGTAGAGCTTTCAAAGCCGCTTTTGAAGTCACA
CCAAAGCCATGTAGAAAGGTGCGTGAAACGCTTGCTAAAGACACCGGTTTGACCGTTCGC
GTGGTTCAAGTCTGGTTTCAAAATCAACGCGCAAAAATGAAAAAGCTGGCCAAGAGACAA
CAAAGTCAAGAAGCAGCAGCCCAAAAAGCTAGAGAAGAATTTGGATTTCGTGGTTTTGAT
CCAATGAACCCAATGTTGCATCACCATCTTCCTCACATGATGCATGACAACAAATCTATG
ATGGATGCAAGTATGTATGGTTACATGGGAGTGCCACAGGGATTGCCACAGGGAATGCCG
TTTACGCCGATCCAATGTGAACAGCAGCAAATGGGTTTTCCAACCAACAGCTTTAACGAC
GGCATATACTATGAGGGAGTTCCCAACATGAACGTGACGTCACCCTCCAGTAATGACTGT
GTTCCCAACCAGCACTTGATTGGATGCCATCCTCAAATCAATCAAATGACAACAACTGCC
AACAATATTAATATGTGTTCAGGCAACGTGTTGATGCCCAACGGCCCCAACAGGGAGATA
CCAACTGAGAATGACGTCATGGCTGTGTCACCCATACGTCATTCGTCTGGTGCGATTACA
CCAATCGATAGCTTATATACCATGCAAAACCATTACTTTAACTCATGA

InterProScan

Pfam	Znf_LIM (IPR001781) - T[10-59] 3.3E-5
SUPERFAMILY	Homeobox-like_sf (IPR009057) - T[150-216] 8.55E-19
ProSiteProfiles	Homeobox_dom (IPR001356) - T[156-216] 16.86
SMART	Homeobox_dom (IPR001356) - T[158-220] 2.4E-21
Pfam	Homeobox_dom (IPR001356) - T[159-215] 3.9E-17
CDD	Homeobox_dom (IPR001356) - T[159-215] 2.86396E-19
ProSitePatterns	Homeobox_CS (IPR017970) - T[191-214] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LMX1A_HUMAN	40.092 %	136	1.58E-36
LMX1B_HUMAN	42.922 %	145	7.69E-40
LHX1_HUMAN	30.175 %	97.4	2.65E-22