- Transcript 'Moocci.CG.ELv1_2.S59...' >
- Transcript 'KH2012:KH.C7.125.v2....' >
- Transcript 'KH2012:KH.L70.1.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S491.g09372.01.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
S491 [43,261 / 55,497]
Amino acid sequence
Length: 644
>Phmamm.CG.MTP2014.S491.g09372.01.p
MMHPGANFRPTFPLEGQGRVNQLGGMFINGRPLPNHIRHKIVEMAAHGVRPCVISRQLRV
SHGCVSKILCRYQETGSIKPGAIGGSKPKVASLDVENKIEEYKNENPGIFSWEIRERLIK
DGICERNTVPSVSSISRTLRAKGCDVDTEAELSAANRSGSSGGEHNDGGGGGGGGGGGGG
GGGGGGGGGVKRKQRRSRTTFSAEQLDELERCFERTHYPDIYTREELAQRTRLTEARVQV
WFSNRRARWRKQMAAQQLHGISSHHPHHIPSHLAYTHTMPAAVGMGTGPGAHNYMLQSPG
SHPSQTMHDTFANSTHEQPHHRTHPPVLSPTMTHPHQAMRYDTSDPLNQSAAAAYGLMGA
SAAAAAAAARYSQYPSAAAASAFGDAYSIHSYHHPASPPSGGMIFGFCPTSSTSYLSTSS
SSRADQQVSSKSPVEGLSPSENPAHAAGHRSHAHYAPSTGLNQHHASRGQHSHAQNCYEN
SSGRQHDRNHSSSSPSSNTETHLTSGVEIPARGFNSMPNTSRSPKLLGINSSGQQQQQQA
LSVRQTSADHSTSAFASQTQRPSVSSSTESNYGVAPGFSSESGHATAVSSSQNPYTACQY
SPYGPNSNDYGNADIAALRMKSREHSTALGLLPVGGVPSVQHAY
Nucleotide sequence
Length: 2,416
>Phmamm.CG.MTP2014.S491.g09372.01.t
AAATGATGCATCCAGGTGCTAACTTCAGACCAACGTTTCCCCTTGAAGGTCAAGGGAGAG
TAAACCAGTTGGGAGGAATGTTTATTAACGGCAGGCCACTTCCCAATCACATAAGACACA
AGATCGTCGAGATGGCCGCACACGGAGTACGACCTTGCGTCATCAGCCGACAGTTGAGAG
TTTCACACGGATGCGTAAGCAAGATACTTTGCAGATACCAGGAGACAGGTTCAATCAAAC
CAGGAGCGATTGGCGGAAGCAAACCGAAAGTGGCTTCGCTTGATGTCGAGAACAAGATTG
AGGAATACAAGAATGAAAATCCTGGTATCTTTAGCTGGGAAATCCGGGAGCGCCTTATTA
AGGACGGAATATGTGAACGCAACACCGTGCCTTCCGTCAGCTCAATCAGTCGGACATTGC
GCGCCAAGGGATGCGACGTGGATACCGAGGCTGAGTTATCAGCCGCGAATCGCTCCGGAT
CGTCGGGAGGTGAACACAACGATGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAAACGAAAGCAGAGAAGAAGCCGAACGA
CCTTTAGCGCTGAACAACTGGATGAGCTGGAGCGATGTTTTGAGCGCACTCATTATCCGG
ATATTTACACCCGTGAGGAGCTGGCCCAGCGCACAAGACTCACCGAGGCTCGAGTTCAGG
TTTGGTTCAGCAACCGACGGGCTCGCTGGCGAAAGCAAATGGCTGCTCAGCAGTTACACG
GCATCTCCTCTCACCATCCCCACCACATTCCTTCCCATCTCGCCTACACACATACGATGC
CTGCCGCAGTTGGCATGGGTACAGGGCCCGGTGCACACAACTATATGCTGCAGAGTCCGG
GTTCCCATCCATCACAGACAATGCACGACACCTTTGCAAACTCAACACACGAACAACCTC
ATCACCGTACTCACCCTCCCGTACTTTCACCCACAATGACACATCCACACCAGGCAATGC
GTTATGACACAAGTGATCCGCTAAATCAAAGTGCTGCTGCAGCTTACGGACTGATGGGAG
CTTCCGCCGCCGCCGCTGCTGCCGCAGCCCGTTACAGCCAGTATCCTTCTGCTGCGGCTG
CCAGTGCGTTTGGTGATGCTTACTCCATTCATTCCTACCATCATCCAGCATCTCCTCCAA
GTGGAGGAATGATCTTCGGTTTCTGCCCAACCTCATCAACCAGCTACCTATCAACCAGCA
GTTCGAGCAGGGCTGATCAACAAGTGTCCTCAAAATCGCCTGTCGAAGGACTTTCCCCGT
CCGAGAATCCAGCCCACGCTGCTGGTCACCGCTCGCACGCGCATTATGCCCCGTCAACCG
GCTTGAACCAACACCACGCGAGCAGAGGACAACATTCACACGCCCAGAATTGCTATGAGA
ATTCAAGTGGACGACAACATGATCGAAATCATTCTTCATCTTCGCCTTCCTCCAATACGG
AAACACACCTCACATCAGGAGTGGAAATCCCAGCACGGGGTTTTAATTCAATGCCAAACA
CCTCACGATCGCCGAAACTGCTCGGGATCAATTCATCTGGGCAACAGCAGCAACAGCAGG
CTCTCTCGGTTCGACAAACTTCAGCAGATCATTCCACATCAGCCTTCGCTTCACAAACCC
AACGCCCGTCCGTATCATCGTCAACAGAATCCAATTACGGAGTAGCACCAGGGTTTTCAT
CCGAATCCGGACACGCAACAGCGGTCTCATCTAGCCAGAATCCATACACAGCTTGTCAAT
ACTCCCCATATGGCCCAAACTCAAACGATTATGGGAACGCCGACATTGCCGCCTTGCGAA
TGAAATCAAGAGAGCATAGCACAGCGCTAGGTCTGCTCCCTGTTGGCGGAGTGCCGAGCG
TTCAACACGCTTATTAATATGGCGCGAGCTCGTGGCCTAAATCAATGAATCCGTTTGCCG
CCAAACGACTTAACAAGGAGGGTTTTCGATCCATCGAGAGCCGTGACTGGGATGATGATT
TGACAAACTGACAATTCTTATCAAATGATTATGGTTTTTTTTGTCGTATTATTGTCTTGC
CCTATTTCACCTGTTGCGCCAAACTGCCGAATCGTTTGCTGCTGAATTCCAAGATATCAT
TTAGTTGTTTTTGCGCCTTCCTGCCAAACCCGTGTTATACCGCGTCGTTCACAACCGATG
TCGTATTTGTTTTTGTGTCGGAGAAAAAAATTTCTAACACTTTGAAACCGCCGACGCCCG
ACTCAGTGACTTCCTATTTATTTACGATTTTTGTGTTGCCTCTGCTGTCCTCACCAACGT
ACTAAGATGCGAATTATCGTGTAGGTATAACGTGTGCTGTTAGTTGATCGTTGTTGTGTG
TTTTGTACAGTTGGCA
| SMART |
Paired_dom (IPR001523) - T[16-140] 3.1E-86 |
| Pfam |
Paired_dom (IPR001523) - T[16-140] 4.3E-71 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[16-142] 59.338 |
| CDD |
Paired_dom (IPR001523) - T[16-143] 3.38667E-79 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[16-84] 3.7E-38 - T[85-143] 3.3E-30 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[18-143] 6.72E-39 - T[188-257] 6.84E-28 |
| PRINTS |
Paired_dom (IPR001523) - T[20-35] 1.3E-36 - T[38-56] 1.3E-36 - T[58-75] 1.3E-36 - T[76-93] 1.3E-36 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[50-66] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[192-252] 21.151 |
| SMART |
Homeobox_dom (IPR001356) - T[194-256] 5.8E-28 |
| Pfam |
Homeobox_dom (IPR001356) - T[195-251] 1.9E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[195-253] 1.77516E-26 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[227-250] . |
| ProSiteProfiles |
OAR_dom (IPR003654) - T[613-626] 9.159 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 67.626 % | 360 | 6.8E-118 |
| PAX3_HUMAN | 55.586 % | 369 | 1.22E-121 |
| PAX6_HUMAN | 45.302 % | 258 | 1.66E-79 |