- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S493.g09401.01.t
Possible name(s)
KDM2A; KDM2B; PHF8
Gene model
Location
S493 [14,854 / 19,027]
Amino acid sequence
Length: 985
>Phmamm.CG.MTP2014.S493.g09401.01.p
MGDRYLRHKSVPVYDDDDAVLDEIDGKRTYDVQDKLNSIKYNADLLLDLEGSDVTFERIQ
RVGLTHPIRIKNKDGLGLTVPDSSNFSVSNVRAMVGSRRMVDVMECKTQRALEMSMRDFE
QYFEGKDRRHIYNVISLEFSQSRLESLVQRPKLIDCLDWIDLVWPQHLKLNQIEQTNKLV
HMKYPKVQKYCLMSVAGCYTDFHIDFGGTSVWYHILKGGKVFWLIEPTNENLSLYERWTM
SGSQGDIFFGDMVSTCQRIELKAGNSLIIPSGWIHAVHTPLDSIVFGGNFLHSFNIPMQL
RIAQVEERLHVPNRFRFPFFSEVLWYALERYVHCFTGNNYLTEEYQSKNLGNSKVNTEEK
ENKEYVHLTPFEYKGLQKMIETLEYIPKNKQNVPEGIIGAEELLEAAKKLLYNHSGDDHE
LAITGKAKAFWPAVHRPDAAKAIRKPKPYNSTPAYKKPSGTGRVRRVRCKQCEACLRDDC
MECAFCKDMRKHGGPGTMKQTCIMRRCLNPILPSTVKDDSIIESPTVPTPPVVESPAPKP
GKRGRKRAGSNESDVTVKVTKVEPEIFPEEESPPPRPIVPRVFVTRVPANELSRYAIRPA
EPAAESDDFPNAKAWQQVVKYLSHQELVNCMLVCKDFLRWCGAPSLWSKIDLTDATISSS
MLQTLVRRAPTSLNLSQTNLRYKQLLWLIERSPALRELYLVRCSWASVAALGTAACPPLR
LLDLSWTSGFTDSHLKQLLSTPSDARPGQKMTHTRLRFCKDLNLTGTDITDLGVKLITNT
LPHLKSLNVSFCPITDEGFQTILNPSCSGQYMLTTVVAQHCAKLTDTALDTTTKMLEITE
IDLRGCEEISTEACSAFVARSKLNLEIFDLFVIVGVNVWRTIQRQNAILMRGNVRLMSTD
VDTDFAAAKEKLNTLKEDPGNDVKLQMYALFKQATIGENTTDKPGAFNFVGQAKWKAWSS
LGSMSKDEAKSQYAKIVDELAAKEK
Nucleotide sequence
Length: 2,958
>Phmamm.CG.MTP2014.S493.g09401.01.t
ATGGGTGATCGGTATTTAAGACATAAATCGGTTCCTGTATATGATGACGACGATGCTGTA
CTTGATGAAATTGATGGAAAACGCACTTATGATGTGCAAGATAAGTTAAACAGCATCAAA
TATAATGCCGACCTGCTTCTCGACTTGGAAGGAAGCGACGTTACATTCGAGCGCATACAG
AGAGTGGGCTTGACGCACCCAATTCGTATCAAAAACAAAGATGGTTTGGGTCTCACGGTT
CCAGACAGTTCAAATTTCAGTGTTTCCAATGTCCGTGCTATGGTGGGAAGTCGTCGGATG
GTCGATGTTATGGAATGTAAAACTCAAAGAGCGCTTGAAATGTCCATGAGAGATTTTGAG
CAATACTTTGAAGGCAAAGATAGAAGACACATTTACAATGTAATATCCCTGGAATTTTCA
CAATCTCGTTTGGAATCTTTGGTTCAAAGACCCAAGTTAATTGATTGTCTAGACTGGATT
GACTTGGTTTGGCCACAGCACCTGAAACTGAACCAAATTGAACAGACAAACAAACTGGTA
CACATGAAATATCCAAAAGTGCAGAAGTATTGCCTTATGTCCGTGGCTGGATGCTATACA
GATTTTCATATTGACTTTGGTGGCACTTCAGTCTGGTATCACATACTTAAAGGCGGAAAA
GTGTTTTGGTTAATTGAGCCAACCAATGAAAACCTGAGTTTATACGAGCGTTGGACGATG
TCAGGAAGTCAAGGTGACATATTTTTCGGTGACATGGTTTCAACCTGTCAAAGGATTGAA
TTGAAAGCAGGCAATTCCTTAATAATTCCGAGTGGCTGGATTCATGCAGTTCACACTCCA
CTGGATTCTATTGTATTTGGAGGCAACTTTTTGCATTCTTTTAATATTCCAATGCAGTTG
AGGATTGCACAAGTGGAGGAGAGACTTCATGTGCCAAATCGCTTTCGATTCCCCTTCTTT
TCCGAGGTTCTCTGGTATGCCTTGGAGAGATATGTGCATTGCTTCACTGGAAACAATTAC
TTAACTGAAGAGTATCAAAGCAAAAACCTGGGCAACAGCAAAGTTAATACAGAGGAAAAG
GAAAACAAAGAGTATGTTCATCTTACACCATTTGAGTACAAGGGACTACAGAAAATGATT
GAAACTTTGGAGTATATACCAAAAAACAAACAAAATGTCCCAGAGGGTATAATTGGAGCA
GAAGAATTGCTGGAAGCAGCAAAGAAGTTACTCTACAATCATTCTGGAGATGACCATGAG
TTGGCAATCACTGGCAAAGCAAAAGCCTTTTGGCCAGCTGTTCACCGACCTGATGCAGCC
AAAGCTATTAGAAAGCCAAAACCATACAATTCAACTCCAGCATACAAAAAACCCAGTGGA
ACTGGCCGAGTGCGTCGGGTTAGATGTAAACAGTGCGAGGCATGCCTACGTGATGACTGT
ATGGAGTGTGCATTCTGCAAAGATATGAGAAAACATGGTGGGCCTGGTACAATGAAGCAA
ACATGCATTATGCGACGATGTCTCAATCCAATTCTGCCATCAACAGTAAAGGATGACTCC
ATTATTGAGTCACCGACAGTTCCTACCCCACCTGTTGTGGAATCACCAGCTCCCAAGCCC
GGGAAAAGGGGAAGGAAAAGAGCTGGCTCCAACGAGAGCGATGTTACTGTGAAAGTTACT
AAAGTTGAACCTGAAATTTTTCCCGAAGAAGAATCGCCTCCACCAAGACCAATTGTTCCT
CGGGTATTTGTGACAAGGGTTCCTGCCAATGAACTAAGTCGATATGCTATCAGACCTGCA
GAGCCTGCAGCTGAGTCAGATGATTTTCCAAATGCAAAAGCATGGCAGCAAGTAGTTAAA
TACTTGTCTCATCAGGAACTGGTGAACTGTATGTTGGTTTGCAAAGATTTCCTGCGATGG
TGTGGAGCACCATCACTTTGGTCCAAAATAGACCTGACAGATGCTACGATCAGCAGCAGT
ATGTTGCAAACCCTGGTACGTAGGGCCCCGACATCACTAAATCTTTCACAAACAAACTTA
AGATACAAACAGCTGCTGTGGTTAATTGAGAGATCCCCTGCTTTGAGAGAGCTTTACTTG
GTAAGATGCTCATGGGCTTCAGTAGCTGCACTTGGAACAGCAGCTTGCCCTCCTCTGCGA
CTGCTTGATTTGTCATGGACATCCGGATTTACAGATTCACATTTGAAACAACTCTTATCA
ACTCCCTCTGATGCCCGTCCTGGTCAAAAAATGACTCATACTCGACTTCGATTCTGCAAG
GATCTCAACCTGACTGGGACAGATATCACAGACCTAGGTGTAAAGTTGATAACTAACACT
CTACCTCATTTAAAGTCACTCAATGTCAGTTTCTGTCCTATAACTGATGAGGGTTTTCAG
ACCATCCTGAATCCAAGCTGTTCTGGCCAGTACATGTTGACAACAGTTGTAGCACAACAC
TGTGCCAAACTAACTGATACTGCTCTGGACACAACAACAAAAATGCTTGAGATCACTGAA
ATTGATCTAAGAGGCTGTGAAGAAATTAGCACTGAAGCTTGTAGTGCTTTTGTTGCTAGA
TCAAAACTTAACTTGGAAATATTTGATTTGTTTGTAATAGTTGGTGTTAACGTTTGGCGA
ACGATTCAACGGCAGAATGCCATACTTATGCGGGGTAATGTGCGATTAATGTCTACAGAC
GTGGACACTGATTTTGCAGCTGCAAAAGAAAAATTAAACACGTTAAAAGAAGATCCTGGA
AATGACGTTAAATTACAGATGTACGCACTTTTTAAGCAAGCCACAATCGGTGAAAACACA
ACTGACAAGCCAGGAGCATTTAATTTCGTGGGACAAGCAAAATGGAAGGCATGGAGTTCT
CTTGGGTCTATGAGTAAAGATGAAGCTAAAAGCCAATATGCAAAAATTGTTGACGAACTT
GCAGCGAAGGAGAAATGA
| ProSiteProfiles |
JmjC_dom (IPR003347) - T[139-307] 27.916 |
| SMART |
JmjC_dom (IPR003347) - T[139-307] 1.4E-32 |
| Pfam |
JmjC_dom (IPR003347) - T[190-290] 5.7E-6 |
| ProSiteProfiles |
Znf_CXXC (IPR002857) - T[462-508] 12.616 |
| Pfam |
Znf_CXXC (IPR002857) - T[463-507] 9.1E-13 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[611-890] 8.3E-38 |
| Pfam |
F-box_dom (IPR001810) - T[616-652] 5.3E-6 |
| SMART |
Leu-rich_rpt_Cys-con_subtyp (IPR006553) - T[692-714] 650.0 - T[716-741] 8.2 - T[781-805] 0.77 - T[835-860] 35.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[782-798] 9.2E-4 |
| Gene3D |
FERM/acyl-CoA-bd_prot_sf (IPR014352) - T[891-985] 3.8E-31 |
| ProSiteProfiles |
Acyl-CoA-binding_protein (IPR000582) - T[901-985] 38.256 |
| SUPERFAMILY |
Acyl-CoA-binding_sf (IPR035984) - T[901-981] 2.09E-25 |
| CDD |
Acyl-CoA-binding_protein (IPR000582) - T[901-984] 5.8546E-37 |
| PRINTS |
Acyl-CoA-binding_protein (IPR000582) - T[902-917] 4.6E-16 - T[919-937] 4.6E-16 - T[942-957] 4.6E-16 - T[963-980] 4.6E-16 |
| Pfam |
Acyl-CoA-binding_protein (IPR000582) - T[903-981] 1.2E-25 |
| ProSitePatterns |
Acyl-CoA-binding_prot_CS (IPR022408) - T[919-937] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| KDM2A_HUMAN | 60.177 % | 458 | 8.71E-144 |
| KDM2B_HUMAN | 55.718 % | 424 | 1.1E-129 |
| PHF8_HUMAN | 43.333 % | 293 | 5.52E-84 |