- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S493.g09401.02.t
Possible name(s)
KDM2A; KDM2B; PHF8
Gene model
Location
S493 [15,598 / 19,057]
Amino acid sequence
Length: 876
>Phmamm.CG.MTP2014.S493.g09401.02.p
MGDRYLRHKSVPVYDDDDAVLDEIDGKRTYDVQDKLNSIKYNADLLLDLEGSDVTFERIQ
RVGLTHPIRIKNKDGLGLTVPDSSNFSVSNVRAMVGSRRMVDVMECKTQRALEMSMRDFE
QYFEGKDRRHIYNVISLEFSQSRLESLVQRPKLIDCLDWIDLVWPQHLKLNQIEQTNKLV
HMKYPKVQKYCLMSVAGCYTDFHIDFGGTSVWYHILKGGKVFWLIEPTNENLSLYERWTM
SGSQGDIFFGDMVSTCQRIELKAGNSLIIPSGWIHAVHTPLDSIVFGGNFLHSFNIPMQL
RIAQVEERLHVPNRFRFPFFSEVLWYALERYVHCFTGNNYLTEEYQSKNLGNSKVNTEEK
ENKEYVHLTPFEYKGLQKMIETLEYIPKNKQNVPEGIIGAEELLEAAKKLLYNHSGDDHE
LAITGKAKAFWPAVHRPDAAKAIRKPKPYNSTPAYKKPSGTGRVRRVRCKQCEACLRDDC
MECAFCKDMRKHGGPGTMKQTCIMRRCLNPILPSTVKDDSIIESPTVPTPPVVESPAPKP
GKRGRKRAGSNESDVTVKVTKVEPEIFPEEESPPPRPIVPRVFVTRVPANELSRYAIRPA
EPAAESDDFPNAKAWQQVVKYLSHQELVNCMLVCKDFLRWCGAPSLWSKIDLTDATISSS
MLQTLVRRAPTSLNLSQTNLRYKQLLWLIERSPALRELYLVRCSWASVAALGTAACPPLR
LLDLSWTSGFTDSHLKQLLSTPSDARPGQKMTHTRLRFCKDLNLTGTDITDLGVKLITNT
LPHLKSLNVSFCPITDEGFQTILNPSCSGQYMLTTVVAQHCAKLTDTALDTTTKMLEITE
IDLRGCEEISTEACSAFVARSKLNLEIFDLFVIVGV
Nucleotide sequence
Length: 2,755
>Phmamm.CG.MTP2014.S493.g09401.02.t
GGCCTGTAATGATTATGTAACAAGTATACCATGGGTGATCGGTATTTAAGACATAAATCG
GTTCCTGTATATGATGACGACGATGCTGTACTTGATGAAATTGATGGAAAACGCACTTAT
GATGTGCAAGATAAGTTAAACAGCATCAAATATAATGCCGACCTGCTTCTCGACTTGGAA
GGAAGCGACGTTACATTCGAGCGCATACAGAGAGTGGGCTTGACGCACCCAATTCGTATC
AAAAACAAAGATGGTTTGGGTCTCACGGTTCCAGACAGTTCAAATTTCAGTGTTTCCAAT
GTCCGTGCTATGGTGGGAAGTCGTCGGATGGTCGATGTTATGGAATGTAAAACTCAAAGA
GCGCTTGAAATGTCCATGAGAGATTTTGAGCAATACTTTGAAGGCAAAGATAGAAGACAC
ATTTACAATGTAATATCCCTGGAATTTTCACAATCTCGTTTGGAATCTTTGGTTCAAAGA
CCCAAGTTAATTGATTGTCTAGACTGGATTGACTTGGTTTGGCCACAGCACCTGAAACTG
AACCAAATTGAACAGACAAACAAACTGGTACACATGAAATATCCAAAAGTGCAGAAGTAT
TGCCTTATGTCCGTGGCTGGATGCTATACAGATTTTCATATTGACTTTGGTGGCACTTCA
GTCTGGTATCACATACTTAAAGGCGGAAAAGTGTTTTGGTTAATTGAGCCAACCAATGAA
AACCTGAGTTTATACGAGCGTTGGACGATGTCAGGAAGTCAAGGTGACATATTTTTCGGT
GACATGGTTTCAACCTGTCAAAGGATTGAATTGAAAGCAGGCAATTCCTTAATAATTCCG
AGTGGCTGGATTCATGCAGTTCACACTCCACTGGATTCTATTGTATTTGGAGGCAACTTT
TTGCATTCTTTTAATATTCCAATGCAGTTGAGGATTGCACAAGTGGAGGAGAGACTTCAT
GTGCCAAATCGCTTTCGATTCCCCTTCTTTTCCGAGGTTCTCTGGTATGCCTTGGAGAGA
TATGTGCATTGCTTCACTGGAAACAATTACTTAACTGAAGAGTATCAAAGCAAAAACCTG
GGCAACAGCAAAGTTAATACAGAGGAAAAGGAAAACAAAGAGTATGTTCATCTTACACCA
TTTGAGTACAAGGGACTACAGAAAATGATTGAAACTTTGGAGTATATACCAAAAAACAAA
CAAAATGTCCCAGAGGGTATAATTGGAGCAGAAGAATTGCTGGAAGCAGCAAAGAAGTTA
CTCTACAATCATTCTGGAGATGACCATGAGTTGGCAATCACTGGCAAAGCAAAAGCCTTT
TGGCCAGCTGTTCACCGACCTGATGCAGCCAAAGCTATTAGAAAGCCAAAACCATACAAT
TCAACTCCAGCATACAAAAAACCCAGTGGAACTGGCCGAGTGCGTCGGGTTAGATGTAAA
CAGTGCGAGGCATGCCTACGTGATGACTGTATGGAGTGTGCATTCTGCAAAGATATGAGA
AAACATGGTGGGCCTGGTACAATGAAGCAAACATGCATTATGCGACGATGTCTCAATCCA
ATTCTGCCATCAACAGTAAAGGATGACTCCATTATTGAGTCACCGACAGTTCCTACCCCA
CCTGTTGTGGAATCACCAGCTCCCAAGCCCGGGAAAAGGGGAAGGAAAAGAGCTGGCTCC
AACGAGAGCGATGTTACTGTGAAAGTTACTAAAGTTGAACCTGAAATTTTTCCCGAAGAA
GAATCGCCTCCACCAAGACCAATTGTTCCTCGGGTATTTGTGACAAGGGTTCCTGCCAAT
GAACTAAGTCGATATGCTATCAGACCTGCAGAGCCTGCAGCTGAGTCAGATGATTTTCCA
AATGCAAAAGCATGGCAGCAAGTAGTTAAATACTTGTCTCATCAGGAACTGGTGAACTGT
ATGTTGGTTTGCAAAGATTTCCTGCGATGGTGTGGAGCACCATCACTTTGGTCCAAAATA
GACCTGACAGATGCTACGATCAGCAGCAGTATGTTGCAAACCCTGGTACGTAGGGCCCCG
ACATCACTAAATCTTTCACAAACAAACTTAAGATACAAACAGCTGCTGTGGTTAATTGAG
AGATCCCCTGCTTTGAGAGAGCTTTACTTGGTAAGATGCTCATGGGCTTCAGTAGCTGCA
CTTGGAACAGCAGCTTGCCCTCCTCTGCGACTGCTTGATTTGTCATGGACATCCGGATTT
ACAGATTCACATTTGAAACAACTCTTATCAACTCCCTCTGATGCCCGTCCTGGTCAAAAA
ATGACTCATACTCGACTTCGATTCTGCAAGGATCTCAACCTGACTGGGACAGATATCACA
GACCTAGGTGTAAAGTTGATAACTAACACTCTACCTCATTTAAAGTCACTCAATGTCAGT
TTCTGTCCTATAACTGATGAGGGTTTTCAGACCATCCTGAATCCAAGCTGTTCTGGCCAG
TACATGTTGACAACAGTTGTAGCACAACACTGTGCCAAACTAACTGATACTGCTCTGGAC
ACAACAACAAAAATGCTTGAGATCACTGAAATTGATCTAAGAGGCTGTGAAGAAATTAGC
ACTGAAGCTTGTAGTGCTTTTGTTGCTAGATCAAAACTTAACTTGGAAATATTTGATTTG
TTTGTAATAGTTGGTGTGTAAGTCGTTAAAATGTAGTTACATAAAATGTTTTTGTAGCTG
TGCAAATTATCCTCAATGTGTATTTACCCAAAAATAATTAAAAGCATGCATCGCT
| ProSiteProfiles |
JmjC_dom (IPR003347) - T[139-307] 27.916 |
| SMART |
JmjC_dom (IPR003347) - T[139-307] 1.4E-32 |
| Pfam |
JmjC_dom (IPR003347) - T[190-290] 4.8E-6 |
| ProSiteProfiles |
Znf_CXXC (IPR002857) - T[462-508] 12.616 |
| Pfam |
Znf_CXXC (IPR002857) - T[463-507] 7.9E-13 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[611-874] 2.1E-37 |
| Pfam |
F-box_dom (IPR001810) - T[616-652] 4.6E-6 |
| SMART |
Leu-rich_rpt_Cys-con_subtyp (IPR006553) - T[692-714] 650.0 - T[716-741] 8.2 - T[781-805] 0.77 - T[835-860] 35.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[782-798] 8.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| KDM2A_HUMAN | 60.177 % | 457 | 1.17E-144 |
| KDM2B_HUMAN | 55.718 % | 422 | 2.84E-130 |
| PHF8_HUMAN | 43.333 % | 291 | 2.11E-84 |