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- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S4.g00175.01.t
Possible name(s)
C6; C7; C8A
Gene model
Location
S4 [126,766 / 132,036]
Amino acid sequence
Length: 420
>Phmamm.CG.MTP2014.S4.g00175.01.p
MTVNYRLRAVLLLIVVLCTEHLDAFLFSNDDCAVSKWGSWTSGLGVCEEGYLVRQRSIIS
YPSYVGIECPFLVEFSSCMETECPIDCQWGEWTNCSPFRTKSRFRNITTPSMFGGFTCTG
TNIEVTSGCSPPAVKTMECKTDQRLCQDEITCVRDTLACNGDDDCTDYSDELHCDEINSP
CDSQKDRIPNIDVVGSGTLRRNLILVHSFRQRELVLPEYFDYAEYSNIITDFGTHYYSSG
VMGGEFELILRYDRAELEESGLTEEEQRNCITGEVSYMTMSGEVDRCSANSLSQRHGGSF
YQAAEEIIATVKGGSSDTAASLSFNQHATPSKEDFDAWAKTVKDNSAVIDFKLAPISAVF
KSKTKQAHMDRALHLYLRRFDPAVCPQECLNGGSSIVTDEGKACQCLCAPNYFGPSCRDM
Nucleotide sequence
Length: 1,263
>Phmamm.CG.MTP2014.S4.g00175.01.t
ATGACAGTTAATTACCGTCTACGAGCCGTTCTGCTGCTTATAGTTGTGCTGTGTACAGAA
CACCTGGATGCGTTTTTATTCTCCAATGATGATTGTGCCGTTTCCAAATGGGGAAGTTGG
ACAAGCGGTTTAGGGGTCTGTGAAGAAGGTTATCTCGTTCGACAGCGTTCCATAATATCA
TACCCTTCCTATGTTGGTATAGAATGCCCTTTCCTGGTGGAGTTCAGCAGTTGTATGGAA
ACAGAATGCCCTATTGATTGTCAGTGGGGAGAATGGACCAACTGTTCGCCATTCCGCACA
AAGAGCCGGTTCAGGAACATAACAACTCCATCTATGTTCGGTGGATTTACATGCACCGGC
ACAAACATAGAAGTTACATCCGGATGTTCACCCCCTGCAGTCAAAACAATGGAATGCAAA
ACAGATCAACGTTTATGCCAAGACGAAATAACTTGTGTTCGGGATACTCTTGCTTGCAAC
GGAGATGATGATTGTACTGATTATTCAGATGAATTACACTGCGACGAAATAAACAGTCCA
TGCGATTCGCAAAAAGACCGGATTCCAAACATTGACGTTGTTGGATCGGGAACGCTGCGA
AGAAATCTTATTCTTGTCCACTCGTTTCGCCAACGTGAGTTGGTTTTGCCCGAATATTTT
GACTATGCCGAATATTCAAATATCATCACCGACTTCGGCACTCATTACTATTCAAGCGGT
GTTATGGGTGGAGAATTCGAACTGATACTTCGCTATGACAGAGCAGAACTGGAAGAATCC
GGCCTCACCGAAGAGGAACAAAGAAATTGTATAACGGGGGAAGTTTCATACATGACTATG
AGTGGAGAAGTCGACAGATGTTCGGCTAATTCCTTGTCCCAGCGCCACGGTGGAAGCTTT
TATCAAGCCGCAGAGGAGATTATAGCAACAGTAAAAGGCGGATCATCTGACACCGCAGCA
TCGCTCAGTTTTAACCAACATGCAACACCTTCTAAGGAAGATTTCGATGCCTGGGCAAAA
ACTGTCAAAGACAATTCTGCGGTGATAGACTTTAAGTTGGCTCCTATCTCAGCTGTGTTT
AAGTCCAAGACCAAACAGGCACACATGGATCGCGCACTACATCTATACCTTCGACGATTC
GACCCGGCGGTATGCCCTCAAGAATGTTTGAACGGCGGGTCGTCCATTGTAACAGATGAA
GGCAAAGCGTGCCAATGTCTTTGTGCACCAAACTATTTTGGTCCGTCCTGTCGGGATATG
TAA
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[28-79] 3.0E-7 |
| SMART |
TSP1_rpt (IPR000884) - T[34-84] 0.009 - T[87-153] 9.1 |
| ProSiteProfiles |
MACPF (IPR020864) - T[50-391] 14.286 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[136-174] 5.37E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[138-174] 1.5E-6 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[138-175] 10.85 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[138-176] 3.2E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[139-174] 7.48717E-6 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[152-174] . |
| SMART |
MACPF (IPR020864) - T[186-378] 2.0E-25 |
| Pfam |
MACPF (IPR020864) - T[202-376] 2.5E-31 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[225-236] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[381-418] 9.408 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[406-417] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 36.017 % | 150 | 2.59E-39 |
| CO8A_HUMAN | 30.736 % | 105 | 1.28E-24 |
| CO7_HUMAN | 29.73 % | 99.8 | 1.91E-22 |