- Transcript 'Phfumi.CG.MTP2014.S1...' >
- EST 'FF727110.1' >
- Transcript 'Moocul.CG.ELv1_2.S82...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S4.g00176.01.t
Possible name(s)
C6; C7; C8A
Gene model
Location
S4 [134,406 / 137,247]
Amino acid sequence
Length: 414
>Phmamm.CG.MTP2014.S4.g00176.01.p
MEGTWPRAGILLALMITFLLLGNTTACHKKKRNCVVSSWTSWGTCSKTCDLGNQGRTRHV
TTSPKNGGRSCPSLAENRPCREAECPIDCKWNDWGEWSNCSSYGTKSRLRSIETPLMFGG
DDCTGINVEITAGCSPTPASTLTCANGSLVCQDDITCVRDTLACNGDDDCTDYSDELHCD
KIHHPCSSPKDRIPSIDAVGAGLLRKNFILTHSFRQRELDLPEHFDYAEYSKIIHDFGSH
FYSSGVLGGEFDLFRYIIGLTEVEQKNCIEAEAFGGGSEKCSTNALSQRHAGSFIQAAKE
IIVTVKGGTSDTAASLSFSKEETPFKEDFEAWAKTVKNNPAVVDFMLAPISAVFESNIKQ
ENMNHALREYLKRFDPDTCPPRCLNGGSPIVIEEGKECKCLCAHNYYGPACRDQ
Nucleotide sequence
Length: 1,245
>Phmamm.CG.MTP2014.S4.g00176.01.t
ATGGAAGGTACTTGGCCACGTGCAGGAATATTACTGGCACTAATGATCACTTTTCTGCTT
CTCGGAAACACCACTGCATGCCATAAGAAAAAACGTAACTGTGTAGTCTCATCTTGGACG
AGCTGGGGTACCTGTTCCAAAACGTGCGATTTAGGAAACCAAGGACGGACGCGACATGTG
ACAACAAGTCCTAAGAACGGTGGAAGAAGTTGTCCTTCGCTGGCAGAAAACCGTCCGTGC
AGAGAGGCAGAATGTCCGATAGATTGCAAGTGGAATGACTGGGGCGAATGGAGTAACTGT
TCGTCGTACGGCACAAAAAGTCGTTTGAGAAGCATCGAAACACCGTTAATGTTTGGCGGC
GATGATTGCACAGGGATAAACGTAGAAATTACTGCGGGATGTTCTCCAACACCGGCCTCC
ACACTGACATGTGCGAATGGAAGCCTCGTATGTCAAGATGATATAACTTGTGTTCGGGAC
ACTCTTGCTTGTAATGGTGATGATGATTGCACTGATTATTCGGATGAATTGCATTGCGAC
AAAATACACCATCCATGTTCTTCACCTAAAGATAGAATTCCAAGCATTGACGCCGTTGGA
GCTGGACTACTTCGTAAAAATTTTATTCTGACGCACTCGTTCCGGCAACGTGAATTAGAT
TTACCTGAACATTTCGACTATGCCGAATATTCAAAGATCATCCATGACTTCGGCAGTCAT
TTTTATTCAAGCGGAGTGCTGGGCGGCGAATTTGATTTATTTCGATACATTATAGGCCTC
ACGGAGGTGGAACAGAAAAATTGTATAGAGGCAGAAGCTTTTGGTGGAGGAAGTGAAAAA
TGTTCTACAAATGCTTTGTCACAACGCCATGCAGGAAGCTTTATTCAAGCCGCAAAGGAA
ATTATAGTAACAGTTAAAGGGGGAACATCCGACACAGCCGCATCGCTGAGTTTCTCCAAA
GAAGAAACACCTTTCAAGGAAGATTTCGAAGCCTGGGCAAAAACGGTCAAAAACAATCCG
GCTGTAGTAGACTTCATGTTGGCTCCTATCTCAGCCGTGTTCGAGTCCAACATCAAACAG
GAAAACATGAACCACGCACTGCGAGAGTATCTTAAACGGTTTGACCCAGACACTTGCCCT
CCGAGATGTTTGAACGGCGGTTCGCCAATCGTGATAGAAGAAGGAAAAGAGTGCAAATGT
CTTTGTGCACACAACTATTATGGTCCAGCTTGCAGAGATCAATAA
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[30-80] 6.6E-14 - T[87-135] 3.4E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[33-86] 11.275 - T[88-138] 9.155 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[33-80] 5.36E-10 - T[85-134] 7.19E-8 |
| SMART |
TSP1_rpt (IPR000884) - T[36-86] 4.3E-11 - T[91-140] 0.0027 |
| Pfam |
TSP1_rpt (IPR000884) - T[37-85] 3.5E-6 - T[93-130] 2.8E-4 |
| ProSiteProfiles |
MACPF (IPR020864) - T[67-385] 9.501 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[138-179] 5.75276E-5 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[141-179] 3.14E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[143-179] 2.3E-7 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[143-181] 3.0E-5 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[143-180] 10.812 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[157-179] . |
| SMART |
MACPF (IPR020864) - T[189-372] 4.1E-16 |
| Pfam |
MACPF (IPR020864) - T[206-370] 4.8E-24 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[375-412] 10.307 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[400-411] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 37.991 % | 146 | 3.09E-38 |
| CO8A_HUMAN | 27.897 % | 96.7 | 1.48E-21 |
| CO7_HUMAN | 28.636 % | 89 | 6.18E-19 |