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TRANSCRIPT CARD

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  1. Transcript 'NCBI:KH.XM_018817162...'
  2. Transcript 'Phmamm.CG.MTP2014.S4...'
  3. Transcript 'Phmamm.CG.MTP2014.S4...'
  4. Transcript 'KH2012:KH.C2.292.v1....'
  5. Transcript 'Phmamm.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S4.g00186.01.t

Possible name(s)

CARF; KDM5A

Location

S4 [209,528 / 212,883]

Sequences

Amino acid sequence

Length: 751

>Phmamm.CG.MTP2014.S4.g00186.01.p
MSISSVVEISPNYQLHGVEYPDEKTTSNSLIKKVIRWFPTIEHVNHAIHLLESSTMTRYN
VLYKRMGRGRVSFNIDDGIPYITERITKLECQHGRDRNKSYNEKRKMKKAPANKKYVRVQ
PSYKADCPAYIDIFEVSKYPQYKAISLKKNHRDAASQALRVALESDNKDIVKVSACKVAF
PPPYAHQGHVLGQVNEHGNGRTLDPRIIAKIDQLVEAGMVSMKDIQKHLRKFVYEEIFKN
QVAPSKSHKRFFPTKKVICDYYIQSCIRQNKVNADGENLTFLIKDWDSSMKTDNVFQQYA
SNASDLNAEATKRSIVLGDNRKPLWHNKEIQDESEEIISDLIEAYIKYSPPKDGETLQRP
PLCATKPMTERVFEILDKIKELAHCTDIEEELLNTESSLQIILDSLIRVSNLHKSNDCSR
KRKSSDADLDHSVKKQRSTINVTIVSSPNAEMDNEDFLGNMDFSHSPNINTLLSSTDSLL
PCVEVITDDPIEDVILTNGPHQLTANDLHLFKSMSTKNFDCLTMGNMVNSFLWQLALNSS
EVMYAENAVLQNINNGSVAKELWDNMSLEGKKYLFLPWNHYQNDWALLIVDIVKQTLLCI
DPLCHIATKTTLLQKAFSFLQKILFLKLHFNLKSTDSSSEFDQIVPWNVDTSAVFICIVA
KSLTFDESLSSLPTSTEKCREEILKIVVGHCLDELPNKGMCKVCKECNQSGAGWIQCARC
AQWFHVICVGLTFDQAENGIYFICPPFDSPT

Nucleotide sequence

Length: 2,256

>Phmamm.CG.MTP2014.S4.g00186.01.t
ATGTCAATTTCATCTGTGGTTGAAATATCACCTAACTATCAACTTCATGGAGTGGAATAC
CCAGATGAAAAAACTACATCTAATTCACTCATTAAAAAAGTTATACGGTGGTTTCCAACT
ATTGAACATGTTAATCATGCCATTCATTTGTTGGAGTCATCAACCATGACAAGGTACAAT
GTTCTGTACAAACGAATGGGACGTGGTCGAGTGTCATTTAATATTGATGATGGAATACCT
TATATCACAGAGAGAATTACAAAACTTGAATGTCAGCATGGAAGGGATCGAAACAAAAGT
TATAATGAAAAGAGAAAAATGAAAAAGGCCCCTGCAAATAAAAAATATGTCAGAGTGCAA
CCTTCTTATAAGGCAGATTGTCCAGCCTACATTGATATATTTGAAGTTTCAAAATATCCA
CAATACAAGGCTATCAGTTTAAAGAAAAATCATAGAGATGCAGCAAGTCAGGCATTAAGA
GTTGCTCTTGAATCTGACAATAAAGACATTGTCAAGGTTTCTGCCTGCAAGGTGGCATTT
CCTCCACCTTATGCCCATCAAGGACATGTTTTAGGCCAGGTAAATGAACATGGAAATGGT
CGCACATTGGATCCAAGAATTATTGCTAAGATTGACCAGCTTGTTGAAGCAGGGATGGTT
TCGATGAAGGACATTCAAAAGCACCTGAGAAAATTCGTCTATGAGGAAATTTTCAAAAAT
CAAGTTGCACCTTCTAAATCACACAAGCGCTTTTTTCCTACAAAAAAGGTTATCTGTGAT
TATTACATTCAGTCCTGCATCAGACAGAACAAAGTAAATGCAGACGGAGAAAACCTGACT
TTTCTTATAAAAGACTGGGACAGTTCAATGAAAACTGACAATGTATTTCAACAATATGCA
TCAAATGCTTCAGATTTAAATGCTGAAGCTACCAAACGCAGCATTGTTTTAGGAGACAAC
AGAAAACCTTTGTGGCACAATAAAGAGATCCAGGACGAGAGTGAAGAAATTATTTCAGAT
TTAATTGAAGCATACATAAAGTATAGTCCACCCAAAGATGGAGAAACACTCCAGCGCCCT
CCTTTATGTGCTACTAAACCCATGACAGAAAGAGTGTTTGAAATTTTGGACAAAATCAAA
GAACTAGCCCATTGCACTGACATTGAAGAAGAGTTGTTGAACACTGAATCAAGTTTACAA
ATCATCCTTGACAGTTTGATAAGAGTTTCGAACCTCCACAAATCAAATGACTGCTCGCGA
AAGCGTAAGTCCAGTGATGCAGATTTGGACCATTCTGTCAAAAAACAAAGATCGACAATT
AATGTTACAATTGTTTCTAGTCCAAATGCTGAAATGGACAATGAAGACTTTCTAGGAAAC
ATGGATTTTTCTCATTCACCAAATATAAATACTTTACTGTCAAGTACAGATTCCTTGCTA
CCATGTGTTGAGGTAATTACAGATGACCCAATTGAAGATGTTATTCTCACAAATGGGCCT
CACCAGCTAACTGCCAATGATCTTCACTTGTTTAAATCAATGTCAACAAAAAACTTTGAT
TGTTTGACAATGGGCAATATGGTCAACAGTTTTTTATGGCAGTTGGCTCTAAACAGCAGT
GAGGTTATGTATGCCGAAAATGCCGTCTTGCAAAATATAAACAATGGTTCTGTTGCTAAA
GAACTGTGGGATAACATGTCACTAGAAGGAAAGAAGTATTTGTTTCTGCCGTGGAACCAT
TATCAAAATGATTGGGCTTTACTGATAGTGGACATTGTTAAACAAACATTATTGTGCATT
GATCCACTGTGTCACATAGCAACCAAAACGACACTTTTGCAAAAAGCGTTTTCCTTCCTT
CAAAAAATTCTGTTTCTTAAATTACATTTTAATCTGAAATCTACTGATTCGTCAAGCGAG
TTTGACCAAATCGTTCCTTGGAACGTTGATACTAGTGCAGTCTTTATCTGTATTGTTGCC
AAATCTTTAACTTTTGACGAGTCGCTAAGTTCTTTGCCAACGTCTACCGAGAAATGCCGT
GAGGAAATTTTGAAGATCGTTGTGGGACACTGCCTTGATGAGTTACCGAACAAAGGCATG
TGCAAAGTGTGCAAGGAATGTAATCAAAGTGGTGCGGGATGGATACAATGTGCTAGGTGT
GCGCAGTGGTTTCACGTTATATGCGTAGGCTTGACATTTGATCAAGCTGAAAACGGTATT
TATTTCATTTGTCCCCCGTTCGATTCGCCAACGTAA

InterProScan

Pfam
CaRF (IPR029309) - T[61-256] 9.4E-35
SUPERFAMILY
Znf_FYVE_PHD (IPR011011) - T[696-745] 1.57E-9
Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[699-746] 7.5E-10
SMART
Znf_PHD (IPR001965) - T[700-748] 3.6E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value