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  1. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S516.g09647.01.t

Possible name(s)

GLI1; GLI2; GLI3

Gene model

Phmamm.CG.MTP2014.S516.g09647

Location

S516 [71,356 / 85,803]

Sequences

Amino acid sequence

Length: 1,251

>Phmamm.CG.MTP2014.S516.g09647.01.p
MSAFLSQCIFAAKTRDTRNLSDNQTSSQHNFQFGHSVGSDKGDRRLSFTPHIPVDPQTRE
GRYSFDARSMQMHTAPGVTGSPNISDISLIPLSPQPLPGAVQNPFTHGSPLDFYMNGMQS
PTMSMLSQARNLSPRHSMQELEKLAYPYYNAHLQNNMSSTGGAQVPTSAFPMPPPMSPIA
YYQFVQQQRLLAAAAARSGDRSVAQEKLEELSRFPSPLCRSRGRKRPLSISPCFSDPNLD
LTSMIRTSPNSLIPFVNGGLTHSRSSSVGSGGSYGHLAAGGISPTFGYHAPMMTSPQHLQ
AHLLSRQMTSAIQNNMAAQRSLSLEQSQGSSMPNPFEQAAALHRNSQPHGGAPAQLKQEG
MHGQYFTERKSMSKLMNEQRHQLSQNQSNNNSNHPGVSPGSQAPPDDDGLYETNCDWENC
SLEFDTQEQLVHKPYACKIEGCTKRYTDPSSLRKHVKTVHGPEAHVTKRMIAQREREGKD
GGVKQEPGLNKDKRKESGSSKSKCRAFSPNSHNDSNDPNASQNMNPRSNQSSCTSGSDVS
VTPQNSPHMTSQNNDSGVDVNVGGNDGDSDGDIVVDEHPLPDSTSGGVQALSRGHSRSGI
VPRIVNKKMQSLSIGGMHGPNDANARDLLNMDQNSPHGAPERIKSGFGKMLIGEPEVTSS
THQTKFQKQGTAILGGGGGLLPSRRQMVLIANDRRDSGTVSDVSRKSSMTSMGSRRSSQM
SNAGMNVAGSYDPISLDSSRRSSSKSNAQGPNYCGRNDMNSLDPCQLHQLRSKFNEEMGR
PPPTPIDRDAYTKSQLTKWLEDSNDRLPDPGYHPMIQPTPPKHMGPPQGVGDMRRRSDGA
YIDPSKLPNVQRYNSWNNIAPLPGIKGRHPNQPNSQYSGYPNNPNFQHVARQRSDSNGSL
YGNESGYQSNGSNAALNHQHMQQPQHTHHAQHIQQQHFNYHQRPVMNEQMLMENLNADFA
AQRGAMEPFGYGGNMPSPSMGPNHPYNTNPNPLHPGYGHPGPQRSFQGQFAPNQPINNQQ
RPYSNYQSPNHMTQHPIAPQPPMSQHFQANNYQHPHGGVVSQASLTPRPPPSGSTPNSNR
QRVARVRSAASNAEMTSQMPVTSSGQGMTSGAGVHTNQVNCTPDAQIPDGFLQQEFLDCI
PELRPDDLGDISTNENQPYIKMPADSTTGPEGDHAFRNDVENDDAMSAATNTDVTLPPMS
AFSSRMATPLMEKPYPVPNQHPASNMAINSMSSMLSALVEEEKYFGMIPPQ

Nucleotide sequence

Length: 3,756

>Phmamm.CG.MTP2014.S516.g09647.01.t
ATGAGTGCTTTTCTGAGTCAATGTATTTTTGCAGCTAAAACTCGAGATACCAGAAACCTG
TCGGACAACCAAACATCTTCGCAGCATAATTTCCAATTTGGTCATTCTGTTGGCAGTGAC
AAAGGTGACAGACGACTCTCTTTTACCCCCCATATTCCGGTGGATCCCCAAACGCGAGAA
GGACGCTACTCGTTTGATGCTCGTTCTATGCAAATGCACACTGCACCAGGCGTGACCGGA
AGTCCCAATATCTCCGACATTTCGTTGATTCCGTTGTCTCCCCAGCCACTACCTGGCGCT
GTTCAGAACCCGTTTACTCATGGTTCTCCATTGGACTTTTACATGAACGGAATGCAATCT
CCAACTATGTCAATGTTGTCCCAAGCAAGAAATCTTAGCCCAAGACATTCTATGCAAGAA
CTTGAGAAGCTAGCCTATCCTTACTATAACGCTCATTTGCAAAACAACATGTCGTCCACT
GGAGGCGCCCAAGTTCCGACTTCAGCCTTTCCTATGCCGCCTCCCATGTCCCCCATCGCT
TATTACCAGTTCGTGCAACAACAACGTCTCCTTGCGGCTGCTGCTGCTCGAAGTGGTGAC
CGCTCGGTGGCGCAAGAGAAGCTTGAAGAGTTATCCAGGTTTCCTAGCCCTTTATGCAGG
TCACGTGGAAGGAAACGTCCACTTTCGATTTCTCCATGCTTTTCTGATCCAAATCTGGAT
CTGACGTCAATGATTCGGACTTCCCCTAATTCCCTCATTCCTTTTGTGAATGGAGGATTA
ACCCACTCCAGGAGTTCATCTGTAGGAAGCGGTGGAAGTTACGGACATCTTGCTGCAGGC
GGAATAAGCCCAACGTTCGGTTACCATGCTCCAATGATGACGTCACCTCAGCATCTTCAG
GCCCATCTGCTCTCACGTCAGATGACGTCAGCAATTCAGAACAACATGGCTGCGCAGCGG
TCTCTTAGTCTCGAACAGTCGCAAGGAAGTTCAATGCCAAATCCCTTTGAACAAGCTGCG
GCTTTGCACAGAAATTCACAACCACATGGGGGCGCGCCGGCGCAGTTGAAACAGGAGGGA
ATGCATGGACAGTACTTCACTGAACGAAAGAGCATGTCGAAGCTTATGAACGAACAGCGT
CACCAACTATCTCAGAATCAATCAAATAACAACAGTAACCACCCAGGTGTTTCCCCTGGT
TCCCAGGCACCGCCTGACGACGACGGACTTTATGAAACAAACTGTGATTGGGAAAACTGT
TCGTTAGAGTTCGACACACAAGAACAACTGGTGCATAAACCGTATGCCTGTAAGATAGAA
GGCTGCACCAAGCGATACACCGACCCCAGCTCACTGAGGAAACACGTGAAAACGGTGCAT
GGACCAGAAGCCCACGTGACGAAACGCATGATTGCACAAAGGGAACGTGAGGGAAAAGAT
GGTGGCGTCAAACAGGAACCTGGTTTAAACAAAGACAAACGAAAGGAGAGCGGTTCGTCG
AAATCCAAATGCCGCGCTTTTTCGCCCAATTCACACAACGATTCGAACGACCCGAACGCT
TCTCAAAACATGAACCCACGAAGCAACCAATCGTCGTGCACTTCCGGCTCTGACGTATCT
GTGACGCCACAAAATTCCCCGCATATGACGTCACAAAACAATGACTCAGGCGTTGACGTC
AACGTTGGTGGAAATGATGGTGATAGTGACGGAGATATTGTGGTAGATGAACACCCACTA
CCCGACTCAACATCCGGGGGTGTTCAAGCTCTGTCACGTGGTCACAGCAGAAGTGGAATA
GTGCCGCGAATCGTCAACAAAAAGATGCAGAGCCTTTCTATTGGCGGAATGCATGGACCC
AATGACGCTAATGCTCGGGATTTACTAAACATGGACCAAAATAGTCCACATGGAGCGCCA
GAGAGAATAAAATCAGGTTTCGGAAAAATGTTGATTGGGGAACCCGAAGTGACGTCATCA
ACGCACCAGACCAAGTTTCAGAAACAGGGCACAGCCATTCTGGGCGGAGGGGGAGGTTTA
CTACCCTCCCGTCGCCAGATGGTGCTCATCGCTAACGACCGCCGAGACAGCGGCACTGTG
AGTGACGTCAGCCGGAAGTCGTCTATGACGTCAATGGGCAGTCGACGGTCAAGCCAGATG
TCAAATGCGGGAATGAATGTTGCTGGTTCGTACGATCCAATTTCGCTCGATTCCTCAAGG
AGATCAAGTTCAAAATCAAATGCACAAGGGCCAAATTACTGTGGACGTAACGATATGAAC
TCACTTGACCCCTGCCAATTGCACCAGTTGAGGTCAAAGTTCAACGAGGAAATGGGCCGG
CCTCCTCCCACTCCTATTGACAGAGACGCTTATACCAAAAGTCAACTCACAAAATGGCTC
GAGGACAGTAATGACCGCTTGCCAGATCCGGGTTACCACCCGATGATCCAACCAACCCCA
CCCAAGCACATGGGACCGCCCCAGGGAGTTGGGGATATGCGGCGCAGGAGCGATGGGGCT
TATATTGATCCAAGCAAATTACCGAACGTGCAGAGGTACAACAGCTGGAACAACATCGCC
CCACTGCCGGGAATAAAAGGAAGACATCCAAATCAACCTAATTCTCAATACAGTGGTTAC
CCAAACAATCCAAATTTCCAGCACGTCGCTAGGCAACGCAGCGATAGCAATGGGAGCTTG
TATGGCAACGAGAGCGGTTACCAGAGCAACGGTAGCAACGCGGCCCTCAACCATCAGCAT
ATGCAACAACCACAACATACACATCATGCACAGCACATCCAGCAACAGCATTTTAACTAT
CACCAAAGGCCTGTCATGAATGAACAAATGCTTATGGAGAATTTGAATGCCGACTTTGCA
GCACAAAGAGGTGCTATGGAACCGTTTGGTTACGGTGGTAATATGCCTTCACCCAGTATG
GGACCCAATCACCCCTACAACACCAACCCCAATCCACTCCATCCAGGTTACGGTCACCCT
GGCCCCCAAAGGTCGTTCCAAGGTCAATTCGCGCCAAATCAACCAATCAACAACCAACAG
CGACCGTACTCAAACTATCAGTCACCAAATCACATGACTCAGCACCCTATAGCGCCCCAA
CCGCCCATGAGTCAGCACTTTCAAGCGAACAATTATCAGCATCCACATGGTGGCGTCGTG
AGTCAGGCTTCACTTACACCTCGACCGCCCCCTAGTGGTTCCACGCCAAACTCGAATCGC
CAGAGAGTGGCTCGGGTCCGCTCGGCGGCAAGCAACGCAGAGATGACGTCACAAATGCCT
GTGACGTCATCGGGGCAAGGGATGACGTCAGGGGCAGGGGTGCATACGAATCAAGTCAAC
TGCACGCCTGATGCGCAGATTCCAGATGGATTTTTGCAGCAAGAATTTCTTGATTGTATT
CCTGAACTTAGACCGGATGACCTTGGAGATATATCTACGAACGAGAATCAGCCTTACATC
AAAATGCCTGCTGACAGCACTACAGGTCCAGAAGGAGACCACGCGTTTCGCAATGACGTC
GAAAATGATGACGCAATGAGCGCCGCCACCAACACTGACGTCACACTGCCACCGATGTCC
GCATTTTCGTCACGCATGGCCACACCTTTAATGGAAAAGCCTTATCCAGTTCCAAACCAA
CATCCCGCATCTAATATGGCGATAAACAGTATGAGTTCCATGCTATCCGCGCTGGTAGAG
GAAGAAAAATATTTCGGAATGATTCCTCCACAATAG

InterProScan

SUPERFAMILY
Znf_C2H2_sf (IPR036236) - T[433-460] 1.28E-7
SMART
Znf_C2H2_type (IPR013087) - T[435-460] 4.3E-4
ProSiteProfiles
Znf_C2H2_type (IPR013087) - T[435-465] 10.575
ProSitePatterns
Znf_C2H2_type (IPR013087) - T[437-460] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GLI1_HUMAN 36.923 % 92.8 7.14E-19
GLI2_HUMAN 37.594 % 110 2.26E-24
GLI3_HUMAN 27.642 % 124 1.8E-28