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  1. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S520.g09705.01.t

Possible name(s)

CDT1

Gene model

Phmamm.CG.MTP2014.S520.g09705

Location

S520 [79,240 / 83,406]

Sequences

Amino acid sequence

Length: 686

>Phmamm.CG.MTP2014.S520.g09705.01.p
MAQQAVVTDYFTRKRQRDTLQDAKRKRTGPAVQSELEVEKSVDAVQEVKKKTREAKTAKA
PTRVTRATTKKSKKSTNKTLDEYLSPKSILKQNSTVSEKSPAKDKISSKTSEPCSISPPV
SPSKRSCNDTDEDPGKKRGRASPTSKEQNESISAQSNTMATLNKKSSQVKVTRNARKRLE
LKENKDDSKSCEQPTATNIEEDTLVTVKNKLSTRSLRTRGKQGDVSNAVNIAEKLLAKKK
ESKETIQESLKSKSNLKDLQETLLKMRDAKKKAKATKSKSKAEKESNKSAEVVKVVKKKD
YAYSRFHTLAQEIPKGLALPFKYKILQEMFRSADTVIGMLFNRQETATWMKVQHSVKDMI
NKNFEKKDLGQIKHVFPEAYLYRQEKGIPTYSDHMKSSDYQLTLEPILDSEELELLENQA
KKLTSGMLVRRRHHFHLQLLDIVKSHHQAFLSSLDPSVTVENSKLRRWHPQFKVDQVPDI
PLDDLPLPPDHEQKKCYSAKEVLDKAKDRLTKKAVDALKKVAEKCVKTPDKVKEGCIEEN
NNVTPVKKTPPKPAIKGVSKSLLDKIREKEADKKLRLMIRSDEDDKKLDMMRQLPDISKA
LRMLFITEKKGALPLDYVAFKLIAACPSVCTSASSESYVRLMAKEADLLISIANIRKQEY
VKLDKNVQLNDVVAQINNKVKVAERS

Nucleotide sequence

Length: 2,061

>Phmamm.CG.MTP2014.S520.g09705.01.t
ATGGCGCAACAGGCGGTAGTCACTGACTATTTTACGCGAAAACGCCAAAGAGACACATTG
CAAGATGCTAAACGCAAAAGAACCGGTCCAGCGGTTCAAAGCGAACTTGAAGTCGAAAAA
TCGGTTGATGCTGTGCAAGAAGTCAAGAAAAAAACAAGAGAAGCAAAAACAGCAAAAGCT
CCGACGAGGGTTACCAGAGCAACAACAAAAAAATCAAAGAAGTCCACCAATAAAACATTA
GATGAGTATTTGAGCCCGAAATCAATCCTTAAACAGAACTCCACTGTCTCGGAAAAATCA
CCTGCCAAAGACAAAATTTCCTCCAAAACTAGTGAACCTTGCAGCATTTCACCACCAGTG
TCACCAAGCAAAAGATCATGTAATGATACTGATGAGGACCCTGGTAAAAAACGAGGAAGG
GCAAGTCCTACCTCAAAGGAACAAAATGAATCTATCTCAGCGCAATCCAACACAATGGCG
ACGTTAAACAAAAAATCTTCACAAGTGAAAGTAACAAGAAATGCTCGCAAACGTTTGGAG
TTAAAAGAAAATAAAGATGATTCGAAATCATGTGAACAACCAACTGCAACCAATATAGAA
GAAGACACATTAGTAACTGTAAAAAACAAGCTTTCCACAAGAAGTTTACGAACCCGAGGT
AAACAAGGGGATGTGTCAAATGCTGTCAATATAGCTGAAAAACTTCTGGCAAAGAAAAAG
GAATCAAAAGAAACTATTCAAGAATCACTAAAATCAAAAAGCAATTTGAAAGACTTGCAG
GAAACACTTTTAAAAATGCGTGATGCCAAAAAGAAGGCAAAAGCAACCAAATCAAAATCA
AAAGCTGAAAAAGAATCAAACAAATCTGCTGAAGTTGTCAAAGTTGTAAAGAAAAAAGAT
TATGCTTACAGCAGGTTTCACACCTTGGCTCAAGAAATTCCCAAAGGCTTAGCTCTTCCA
TTTAAATATAAGATATTGCAAGAAATGTTTCGAAGTGCTGATACAGTAATCGGAATGTTG
TTCAACAGACAAGAAACTGCTACATGGATGAAGGTTCAACATTCTGTTAAAGATATGATC
AACAAGAACTTTGAAAAGAAGGATTTAGGTCAAATCAAACATGTTTTTCCTGAGGCGTAC
CTCTATCGCCAGGAGAAGGGCATTCCAACTTACAGCGATCACATGAAATCCTCTGATTAT
CAGCTGACCCTTGAACCTATTCTGGACAGTGAAGAATTGGAATTGTTGGAAAATCAAGCA
AAGAAATTAACAAGTGGAATGTTAGTTCGACGTCGACATCATTTCCACCTCCAGTTGCTT
GATATTGTTAAAAGCCATCATCAGGCGTTTTTATCTTCCTTGGATCCTTCAGTGACTGTT
GAAAACAGCAAACTTCGTCGCTGGCACCCACAGTTTAAGGTGGACCAGGTTCCAGACATC
CCACTGGATGACCTTCCTCTTCCTCCTGATCATGAACAGAAAAAATGTTACTCTGCCAAG
GAAGTTCTGGATAAGGCCAAAGACAGACTTACCAAAAAGGCTGTGGACGCCTTGAAGAAG
GTTGCAGAGAAATGTGTAAAAACACCTGACAAAGTGAAAGAAGGTTGCATTGAGGAAAAC
AATAATGTAACACCTGTAAAGAAAACTCCACCAAAACCTGCTATTAAGGGTGTTTCAAAA
TCACTCCTAGACAAGATTCGTGAAAAGGAAGCTGACAAAAAGCTCCGTCTCATGATCCGA
TCAGATGAAGATGATAAGAAGCTTGATATGATGAGACAACTACCTGATATTTCAAAGGCT
TTAAGAATGCTCTTCATAACTGAGAAGAAAGGAGCACTACCATTAGATTATGTTGCTTTC
AAACTGATCGCTGCCTGTCCAAGTGTATGCACATCAGCTTCATCAGAAAGCTACGTGAGA
CTAATGGCCAAGGAAGCTGACTTGCTGATTTCGATTGCAAACATCCGAAAACAAGAATAT
GTCAAGCTGGACAAAAACGTTCAACTAAATGATGTTGTTGCACAAATAAACAATAAAGTA
AAAGTAGCTGAAAGATCTTAA

InterProScan

SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[302-489] 2.99E-49
SMART
CDT1_Gemini-bd-like (IPR014939) - T[319-487] 2.5E-66
Pfam
CDT1_Gemini-bd-like (IPR014939) - T[319-486] 6.4E-54
Pfam
Cdt1_C (IPR032054) - T[561-655] 1.3E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CDT1_HUMAN 35.991 % 297 1.93E-92