- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S526.g09766.01.t
Possible name(s)
IRX2; IRX4; IRX6
Gene model
Location
S526 [15,589 / 18,242]
Amino acid sequence
Length: 582
>Phmamm.CG.MTP2014.S526.g09766.01.p
MDARLVAARLPGLAMYGTPYQSPPFQGYLPYGPAAAAAVAAATDPSAFYSHMGPGDNSEA
WRAGLSQAAAYYDPAVAAHYGYGYGPMGLTDGARRKNATRETTSTLKAWLNEHRKNPYPT
KGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWSPRNRCGEDDDDEDMDDGNHSIP
NNNSRSSTPIGNDSDICSQPTNNPMVPPGAHIRREVVRPNGHSSGGESLSDESAVYSDQP
ENSHHVDKPSENNDTAQSEANNNGKESPNSGFTRLNEEHRARQLSSHFARHAIHPYANPR
SSPSAIPSSLSPSVHSTLRTGMPFKGSVSCHLPTSQPPHRIFHPGHNLPAQFNPAAAASL
IAASRGHTLPPHVMAALNEQAQMHHYQQALQHLPGNPMRIGQSDGHVSGSESPSPLSQTA
SKSPQTPSSTTASSTGSSSPPTKPKIWSLADVATSDDNPKKSETNSPPGSARRTEINFQN
DTGAVRSWMDDVLHQRITGLSGKTPTSLSNNVPMTPQQLHQLAITLSSTHSQGNHMLDHQ
HLVNEGVRIPTGFMDVSSFHNHTNLMRQQVFNLNQRKDSKGG
Nucleotide sequence
Length: 1,749
>Phmamm.CG.MTP2014.S526.g09766.01.t
ATGGACGCTCGACTCGTAGCCGCTCGACTTCCCGGGCTTGCGATGTACGGAACCCCGTAT
CAGTCACCGCCTTTTCAGGGCTATCTTCCGTACGGACCCGCCGCGGCTGCTGCAGTAGCT
GCTGCGACAGACCCATCGGCATTTTACTCACACATGGGCCCCGGCGATAATTCCGAAGCT
TGGCGGGCAGGACTGTCTCAAGCCGCCGCCTACTACGATCCCGCGGTGGCTGCGCACTAC
GGATACGGGTACGGTCCAATGGGCTTGACCGATGGTGCACGCCGAAAAAATGCCACCAGA
GAAACAACTTCAACATTAAAGGCTTGGCTGAACGAACATCGAAAGAATCCGTACCCAACA
AAAGGAGAAAAAATTATGCTCGCCATTATCACTAAAATGACGCTTACTCAGGTGTCAACC
TGGTTTGCAAACGCTCGTCGTCGACTAAAAAAGGAGAACAAGATGACCTGGTCACCACGC
AACAGATGCGGTGAAGATGACGATGATGAAGATATGGATGATGGCAACCACAGTATCCCT
AACAACAACAGTCGGTCTTCAACGCCCATCGGAAACGACAGCGATATTTGTTCTCAACCA
ACAAACAACCCCATGGTTCCGCCCGGCGCCCATATACGTCGTGAAGTTGTGCGGCCAAAC
GGACACAGCAGCGGTGGCGAAAGTTTGTCGGATGAGAGCGCGGTATATTCCGATCAACCG
GAAAATTCACACCACGTCGATAAACCAAGCGAAAACAACGATACTGCCCAGTCCGAAGCG
AACAACAACGGAAAAGAATCGCCGAACTCAGGATTTACCCGACTCAACGAAGAACACCGA
GCAAGACAGCTATCTTCACATTTTGCTCGCCATGCAATTCACCCATATGCAAACCCACGT
AGCTCCCCATCAGCAATTCCCAGCAGTCTTTCACCTTCTGTCCATTCTACTCTTCGCACT
GGAATGCCCTTCAAAGGAAGCGTGTCATGTCACCTACCGACCTCGCAACCGCCACATCGC
ATTTTTCACCCCGGACATAACTTGCCTGCTCAATTCAACCCGGCCGCTGCTGCTTCTCTT
ATAGCTGCCTCAAGGGGCCATACTTTGCCGCCGCACGTAATGGCCGCTCTCAACGAACAG
GCGCAAATGCATCATTACCAGCAAGCGTTACAACATCTTCCTGGCAACCCTATGCGCATT
GGTCAATCTGACGGACATGTATCGGGAAGCGAAAGTCCATCACCATTATCCCAAACAGCT
TCTAAATCTCCACAAACCCCTTCAAGTACGACTGCCTCGTCAACTGGTTCATCTTCACCT
CCTACCAAACCAAAAATTTGGTCCCTGGCTGATGTTGCAACAAGTGACGACAATCCGAAA
AAATCTGAAACAAATTCCCCCCCAGGATCAGCAAGAAGAACTGAAATAAACTTTCAAAAT
GATACAGGGGCTGTAAGAAGTTGGATGGATGATGTTTTGCATCAACGAATAACCGGACTT
TCGGGAAAAACACCGACATCTCTATCTAACAATGTTCCTATGACGCCCCAGCAGTTGCAC
CAGTTAGCCATAACTTTAAGTTCCACCCATTCTCAAGGCAACCACATGTTGGATCACCAG
CATCTTGTGAACGAGGGTGTGCGAATTCCTACAGGTTTTATGGATGTATCGTCGTTTCAT
AACCACACGAACCTGATGCGCCAACAAGTTTTCAACCTCAACCAGCGTAAAGACTCGAAA
GGTGGTTAA
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[89-152] 12.795 |
| SMART |
Homeobox_dom (IPR001356) - T[91-156] 1.7E-11 |
| CDD |
Homeobox_dom (IPR001356) - T[94-153] 7.81807E-14 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[94-159] 1.63E-17 |
| Pfam |
Homeobox_KN_domain (IPR008422) - T[109-148] 2.0E-15 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[127-150] . |
| SMART |
Iroquois_homeo (IPR003893) - T[439-456] 3.5E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IRX6_HUMAN | 52.91 % | 175 | 7.06E-49 |
| IRX4_HUMAN | 61.783 % | 159 | 1.4E-42 |
| IRX2_HUMAN | 68.103 % | 149 | 2.67E-39 |