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  1. Transcript 'KH2012:KH.L116.80.v1...'
  2. Transcript 'Boleac.CG.SB_v3.S418...'
  3. Transcript 'Haaura.CG.MTP2014.S2...'
  4. Region 'REG00000226'
  5. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S544.g09915.01.t

Possible name(s)

AC008695.1; RAPGEF2; RAPGEF6

Location

S544 [42,595 / 50,627]

Sequences

Amino acid sequence

Length: 576

>Phmamm.CG.MTP2014.S544.g09915.01.p
MVAKRRGSYDMATENEESFGKQIPGTKRRGCQCLVLEPSEMIAIDYPDMTLHSGGITTRP
HAFRHSSSNSASSTLDSVIEVDSTSSESLHSSPMHQAMATNLHKAANGQVTMRDDISQSS
FSKDIDDGEEDMEEPDIDEDDSISLHSTSSIVIKDLVIEVLKKDIADRNGDDLEILLEFT
KSLRAFSNMTEPIRRALCKVMVFAWVEKAGTVVLKDDELLDSWSVIINGQVQVKTKDGSS
DTELVMGDSFGVEATLQSQNHKGVMYTCCDDCQFLCIAQQEYYDVLHQGQENIQNITDES
GQIVMVKEKREFDGGAKKGNIVIRGNADSLLHHLLEDNTIDATYTDDFLLTYRAFGNEPR
KICSKLLEWFDNTMFRDKVIRVILLWVNNHFNDFECDWRMMALLEKFEGKLHQHQLQGEM
MLFNIACNAKAKPRTVSITRQSNEVDLGFEIIGGSENNFPIYIDKVKEGSSAEEKGVKRG
DLLMEVNGQNFEKLSKEKAHVILNKNTELNMTLKTSLFPFKQMVEELSNPHKKKKGKGDD
KMPHAPGNRAGRMSLTMLPNDGSDTFDTKHRKGEVL

Nucleotide sequence

Length: 1,731

>Phmamm.CG.MTP2014.S544.g09915.01.t
ATGGTAGCCAAGCGGCGTGGATCTTATGATATGGCCACCGAAAACGAGGAAAGCTTTGGT
AAACAAATTCCTGGTACCAAACGCAGAGGTTGTCAATGCCTTGTCCTTGAACCATCGGAA
ATGATAGCTATTGACTACCCAGATATGACTTTACATAGCGGTGGAATAACGACAAGACCT
CACGCTTTTCGCCATAGCAGCTCAAATTCTGCGTCAAGTACATTAGACAGTGTAATTGAA
GTGGATTCCACATCTTCTGAATCATTACACAGCTCCCCGATGCACCAAGCTATGGCAACA
AACTTGCACAAAGCTGCAAATGGACAAGTTACAATGCGAGACGATATTTCACAATCCAGC
TTTTCAAAAGACATTGATGATGGTGAAGAAGATATGGAAGAACCAGATATTGATGAGGAT
GATTCTATTTCTCTACATTCCACCTCATCCATTGTCATCAAAGATCTTGTGATTGAGGTT
CTCAAAAAGGACATAGCTGACCGAAATGGTGATGATCTTGAAATTCTGCTGGAATTTACC
AAGAGCCTGCGTGCGTTTTCAAACATGACCGAGCCTATCAGAAGAGCTCTTTGCAAAGTC
ATGGTTTTTGCATGGGTAGAAAAAGCTGGCACAGTTGTTCTTAAGGATGATGAACTGCTT
GATTCGTGGTCTGTGATAATCAACGGGCAAGTTCAGGTGAAAACAAAAGATGGAAGTAGC
GATACAGAGCTGGTTATGGGTGACAGCTTCGGGGTTGAAGCCACCTTGCAGTCACAAAAC
CACAAAGGTGTCATGTACACATGCTGCGACGACTGTCAGTTCCTTTGCATTGCACAACAA
GAATATTACGACGTTCTTCACCAAGGACAAGAAAACATTCAAAATATCACAGATGAGAGT
GGCCAGATTGTAATGGTGAAGGAAAAACGAGAATTTGATGGCGGTGCCAAAAAAGGCAAT
ATTGTCATTCGAGGCAATGCTGATAGCCTGCTACATCATTTATTGGAGGACAACACGATA
GATGCAACATACACTGATGACTTTTTACTCACATATAGAGCTTTTGGAAATGAACCACGA
AAAATTTGCAGCAAACTTTTAGAATGGTTCGATAACACCATGTTTCGTGATAAGGTTATC
AGAGTCATATTACTATGGGTGAACAATCATTTCAACGACTTCGAATGCGATTGGCGAATG
ATGGCCCTGCTCGAAAAGTTTGAAGGCAAACTGCATCAGCATCAATTACAAGGCGAAATG
ATGCTCTTCAACATCGCATGCAACGCCAAAGCAAAACCAAGAACAGTCTCCATAACAAGA
CAGTCAAACGAAGTTGATCTTGGCTTTGAAATTATCGGTGGAAGCGAAAACAATTTTCCC
ATTTACATCGATAAGGTCAAGGAAGGCTCCTCTGCTGAAGAAAAAGGTGTCAAAAGAGGT
GACCTTCTCATGGAAGTAAACGGACAAAACTTCGAGAAATTGAGCAAAGAAAAAGCGCAT
GTGATATTAAACAAAAACACAGAGCTCAACATGACATTAAAAACAAGCCTTTTCCCTTTT
AAACAAATGGTTGAAGAACTCAGTAACCCCCATAAGAAGAAAAAGGGCAAAGGAGATGAC
AAAATGCCACACGCGCCAGGCAATCGTGCTGGCAGGATGTCATTAACGATGCTGCCAAAT
GACGGGTCTGACACCTTTGACACAAAACATCGCAAAGGTGAAGTTCTATAA

InterProScan

PANTHER
RapGEF2 (IPR030739) - T[17-48] 5.7E-139 - T[127-515] 5.7E-139
SUPERFAMILY
cNMP-bd-like (IPR018490) - T[163-288] 9.67E-15
Gene3D
RmlC-like_jellyroll (IPR014710) - T[164-291] 4.1E-46
ProSiteProfiles
cNMP-bd_dom (IPR000595) - T[185-286] 10.021
SMART
cNMP-bd_dom (IPR000595) - T[185-304] 2.3E-9
CDD
cNMP-bd_dom (IPR000595) - T[185-288] 6.01461E-11
SUPERFAMILY
Ras_GEF_dom_sf (IPR023578) - T[296-449] 9.94E-20
ProSiteProfiles
Ras-like_Gua-exchang_fac_N (IPR000651) - T[318-430] 16.964
SMART
Ras-like_Gua-exchang_fac_N (IPR000651) - T[318-430] 5.3E-10
Pfam
Ras-like_Gua-exchang_fac_N (IPR000651) - T[323-407] 1.9E-9
CDD
Ras-like_Gua-exchang_fac_N (IPR000651) - T[328-422] 8.77354E-15
SUPERFAMILY
PDZ_sf (IPR036034) - T[431-509] 3.68E-17
ProSiteProfiles
PDZ (IPR001478) - T[435-505] 15.521
Pfam
PDZ (IPR001478) - T[436-512] 2.8E-11
SMART
PDZ (IPR001478) - T[445-517] 1.6E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RPGF6_HUMAN 41.581 % 389 2.37E-120
RPGF2_HUMAN 49.881 % 407 1.95E-127
RPGF3_HUMAN 23.929 % 85.5 2.53E-17





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