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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA225YN20' > 
  2. Transcript 'Phmamm.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S5471.g18799.01.t

Possible name(s)

TRIM54; TRIM55; TRIM63

Gene model

Phmamm.CG.MTP2014.S5471.g18799

Location

S5471 [221 / 4,147]

Sequences

Amino acid sequence

Length: 257

>Phmamm.CG.MTP2014.S5471.g18799.01.p
TATETTQSSSIFLDPPTVPVELQCPACRQLFDTPVFFPCSHTFCRFCAAHLIEAADPVLQ
QRNRFLCPTCRNIIKYGPEGVSSLPRNINIEQAVKRFKQESKIRYPACERHREFHMEKLM
WCETCDTNLCPLCALDDKHKDHKIAPIAVLKKFKAVRRRLQGTTDVLSGKIEKIGSNILQ
TEGVVTEMEDQGVKLKEKVDKECDAMIGQIEKRRQAMYADIDGIVERKKGKRQKEIKGLR
VEFNEVIFLNTSRTTNV

Nucleotide sequence

Length: 773

>Phmamm.CG.MTP2014.S5471.g18799.01.t
TACAGCAACGGAGACCACACAGTCTTCTTCGATATTTTTGGACCCTCCCACGGTGCCGGT
GGAGTTACAATGTCCAGCTTGTCGCCAATTGTTCGACACGCCCGTATTTTTTCCCTGCTC
TCATACATTTTGTCGGTTTTGTGCAGCCCACTTGATCGAGGCTGCTGACCCTGTACTACA
GCAACGGAACAGGTTTCTGTGTCCAACATGTCGAAATATCATCAAGTATGGTCCAGAAGG
TGTCAGCAGTCTGCCAAGGAACATTAACATTGAACAGGCAGTAAAGCGTTTCAAGCAGGA
GAGCAAGATACGATATCCGGCATGCGAGAGACATAGAGAGTTCCACATGGAGAAACTCAT
GTGGTGTGAAACATGCGACACCAATCTCTGCCCGCTTTGCGCATTGGACGACAAACACAA
GGATCATAAGATTGCTCCTATCGCAGTTTTGAAGAAGTTTAAGGCTGTAAGGCGACGACT
GCAAGGAACAACCGACGTGTTATCCGGAAAAATAGAGAAAATTGGCAGCAATATTCTGCA
AACGGAAGGAGTTGTTACAGAAATGGAAGACCAAGGAGTAAAGTTGAAAGAAAAGGTTGA
TAAGGAGTGCGATGCCATGATTGGTCAAATCGAGAAGAGGCGACAGGCCATGTATGCTGA
TATCGACGGCATTGTTGAACGGAAAAAGGGAAAACGACAAAAGGAAATCAAGGGCCTCAG
AGTGGAGTTTAACGAGGTAATCTTTTTGAACACTTCAAGAACGACTAATGTAG

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[14-105] 2.2E-15
ProSiteProfiles
Znf_RING (IPR001841) - T[24-71] 11.53
Pfam
Znf-RING_LisH (IPR027370) - T[24-68] 1.1E-7
SMART
Znf_RING (IPR001841) - T[24-70] 2.4E-5
ProSitePatterns
Znf_RING_CS (IPR017907) - T[39-48] .
ProSiteProfiles
Znf_B-box (IPR000315) - T[103-147] 10.978
Pfam
Znf_B-box (IPR000315) - T[105-147] 2.5E-6
CDD
Znf_B-box (IPR000315) - T[106-147] 4.81342E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRI54_HUMAN 26.86 % 102 2.26E-25
TRI63_HUMAN 27.232 % 95.1 9.76E-23
TRI55_HUMAN 30.631 % 105 1.07E-25