- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S553.g10011.01.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
S553 [93,015 / 102,258]
Amino acid sequence
Length: 586
>Phmamm.CG.MTP2014.S553.g10011.01.p
TRANEIEPCGWWLAKVKMSKGEFHVIEYQSCKPKHTEIVTRDRLRNVNTQPLLSVSPILK
VSLPVPEDLQDFCAKYIDAHKEFEKSTGSILVRYNAESKSLDILVPNESAKTRASIVSDL
HFRSLRTKLSMLQKVEEAAKQLEVSQQKATSCTEHFHVADDLIGLAIGTNGTNIIAARRV
PGVIDIILDEETHNFTVYGETKDAVLKAREILEFMETEVLVPRPFVGKVIGKKGVTIQEM
IDKSGVLRVRVIGDDENEPTNRTDGLVPFRFVGTRENIHNAQALLNYHVAYLKDLDNIRL
EQINLNQKIKQLGTGTHGPGSGLPPRGDDGEPRRHQRPNRRYNDERRNRSDREGGTASEL
SNVSDTGSETGDSMAEGKPLTRREYGPGADPRYNRGRGGYRGRGNYRGGGRGNSQTGYQE
RQHPNMKNTILADPNRNPYDVLSNDDEGGSREDSPQGAPNGRFEKGDRPHGGDGGYRGNR
GRRGRGGNRGGGYHNNHNQQNPNGGEMPNLDSDFPPLIDWADSVESANDFIDRGPIKQGK
KSPDNDQKPNGDKKPTQDDAKEQRPPRKTGPISNTKKPVAEVNGVA
Nucleotide sequence
Length: 3,404
>Phmamm.CG.MTP2014.S553.g10011.01.t
CACACGAGCTAATGAGATTGAACCATGTGGATGGTGGCTTGCCAAAGTAAAAATGAGCAA
AGGTGAATTTCATGTGATCGAGTACCAATCATGCAAGCCCAAACACACAGAAATCGTAAC
CAGAGACAGACTCCGTAACGTCAACACTCAACCACTTCTTAGTGTTTCTCCAATACTCAA
AGTCTCGCTGCCTGTACCAGAAGATCTACAAGACTTCTGTGCCAAATACATTGATGCTCA
CAAGGAGTTTGAGAAGAGCACTGGTTCTATTTTGGTGAGGTACAATGCTGAGTCAAAAAG
TCTAGACATCCTTGTTCCAAATGAATCAGCAAAAACACGAGCTTCCATTGTATCTGACTT
GCACTTCAGAAGTCTCCGTACAAAACTCTCCATGCTGCAGAAAGTGGAAGAGGCAGCTAA
ACAACTAGAGGTTAGCCAACAAAAAGCCACATCATGCACTGAGCACTTTCATGTCGCTGA
CGATCTTATTGGGCTTGCGATTGGTACCAATGGAACAAACATCATAGCGGCGCGCCGTGT
TCCTGGGGTTATTGATATTATACTGGATGAGGAAACACACAACTTTACTGTGTATGGTGA
AACCAAGGATGCAGTCTTAAAAGCACGAGAAATTTTGGAATTTATGGAAACTGAAGTTCT
AGTGCCTCGGCCATTTGTGGGCAAAGTAATTGGAAAGAAGGGTGTCACAATTCAAGAAAT
GATTGACAAATCAGGTGTTCTGCGAGTTCGTGTGATCGGTGATGATGAAAATGAACCTAC
AAATCGAACTGACGGCCTCGTGCCATTTCGCTTTGTTGGGACAAGAGAAAATATTCATAA
TGCACAGGCTCTGCTTAACTACCATGTGGCCTACCTTAAGGATTTGGATAACATCAGACT
GGAACAAATTAACCTGAACCAGAAAATCAAACAACTTGGCACAGGCACACATGGCCCTGG
CTCTGGCCTGCCACCTCGTGGTGATGATGGCGAACCTCGCAGACACCAACGTCCCAATCG
AAGATATAACGATGAAAGAAGAAACCGCTCAGACCGTGAAGGCGGAACCGCGTCGGAATT
ATCCAACGTTTCTGATACTGGGTCCGAGACTGGAGACTCGATGGCAGAGGGAAAACCCCT
AACTCGCAGGGAGTACGGACCTGGGGCAGACCCCAGATACAATCGTGGACGGGGTGGTTA
CCGAGGAAGGGGTAACTACCGTGGGGGTGGTAGGGGAAATTCCCAAACGGGGTACCAAGA
GAGACAGCACCCGAATATGAAAAATACCATTCTGGCCGATCCCAACCGAAACCCATACGA
CGTTCTTTCTAACGACGACGAGGGAGGATCACGTGAAGATTCGCCCCAGGGCGCCCCTAA
CGGTCGATTTGAGAAAGGGGATCGCCCGCATGGTGGGGATGGTGGTTATCGTGGAAATCG
GGGACGCAGAGGCCGTGGTGGAAACAGAGGTGGCGGATACCATAACAATCATAATCAACA
AAACCCTAATGGCGGTGAAATGCCAAATCTAGATTCGGATTTTCCTCCATTAATTGATTG
GGCAGATTCTGTTGAGTCAGCAAATGACTTTATTGATAGAGGTCCGATAAAGCAAGGCAA
GAAATCACCGGACAATGACCAGAAACCGAACGGGGACAAAAAGCCGACGCAAGATGATGC
TAAAGAGCAGCGGCCTCCGCGCAAAACAGGCCCCATTTCCAACACGAAGAAACCAGTGGC
TGAAGTAAACGGCGTGGCGTGAACGCAACCCTTTGCTGATCCGATTTCGCCTTACCATCC
GGCCGTTCTTGTATTTATTTCCCAAACCTTGATTTGATTGCTTCTTCTTTGATTTACGCC
TTATTGGTGTGTTCAAAACTTTCTGAAATATTCTCCACAAAATGGGCAAGTTTGGCCTTT
TACTCAACTTGCAGTACCCTGGTATTTAAGAATGGGTTTGTGATTAGGTCATTGTTCAGG
AAATGGCTTGACATTATCCATACACATCTAGTGTGCTGCATGAATAGCATGTTCTTTTTG
CCGTCGGTGGCGTTTACTGTATTGAATAGGATTTCATCCTAATACCACATGTTACTGTGT
ATTCTGTCTTGCATGTTTACCGATTGACCCAGTTTCCAAATGATACTTGATTTCTACTAA
CTTCACTACATAATACAAGCCTGTGTGCCCACTGGCATTAGGCTTTCAAAATATTTGATG
TAGAAATAAGGTTTGAAATTTTGACCCCTTTTCTGATTGGTCGATTTTTGGGTGTTGTGA
CCCCAGCGCAGCTGAAGAGGGGTGGAATTCCCCGAAACCAAGTCCTGTCCATGGGTCACT
CACCCCTAGTAGCCAGTTTGCTTGTCAGAAGAAATAGTGTTTAAGAGTTCCCAATTGTTT
GTACATTTAGTGGTTATCTACAAACACAACGCTGAAGCATTAATTTGTTTGTATTAGTTC
GTATTGTGTGCCTTTGAATGCTACGAATTTTGTTGGAACTGGATTGCTCTTTGTGCATAA
CCCCCCACCTTATTTACCTGCGTTTTCGCATAGTTGAAAAGCGCTACCAATGCTAGTGTT
TGTGCAAAACACCACATGCACTACCTAAGGACATCATTAGTTTGCCCAAAAATTTGCAAA
TATACCCAGCAAATCCGTAGTTTCAACAAGCATTGGACTTTCCGCTCGAACAATACATCT
TGAAACTGAATATTTTCTTCTAAACCTTCACATCTAAGTTTCTTACTAAACCTAATATGC
GACATTATTCTATATTTGTTTGTGTTTGGAACAAGCAATTGATAAATTGGGGTTTAATTT
TGCATGTACTTGTCTTGGAATATAACTTGGGCCCTAAACTCATCACACAACACATTTCTA
TTACCAGAATGTGTTCAGAAGTTATCCACTCTCAAGCGTTTGCGTTTATACTGTGTTGTG
TCTTTCTATTTTAACCTTCTAGCCAATAGACTCTAATCGATGTCTATGGGTATACAACAC
TTCAACAGAAAGACTTAAAAGCCCATGTACCTTGCGATTGGTGCTGATCTTTTGCTAACG
GCCTGTACAAGACACTTTGTTTGCCTGTCACTGTGCACTTTTATGAATAATTACGCATGT
CGTCGATAAGATATCCCTCCGTAACGCACAACATCCACAAAAATAAATATTGCTGTGTCC
CTGAAGATCCAACAAAGATTGTAGTAGTTGTAGATTTTTCTGTGTCACCTTTTAATGACA
TTTTGTAAATGTAACTACGGTGCTCCAAAAGGGTTCCGCTTTTTTTCAACGTTTCAGTGA
GTTCATTTTGCGGCAACGGTATTGTTCTTGGTATTGTTCGCGTTTTTTTCATGTTCGTTC
TCTTCGTTTGCTTATATGCATGCCTTGCAAATATACAATGAAAT
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[1-47] 19.241 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[149-212] 1.4E-23 - T[213-293] 2.1E-22 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[150-218] 2.09E-9 - T[215-291] 1.49E-10 |
| SMART |
KH_dom (IPR004087) - T[150-216] 0.011 - T[217-290] 0.004 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[217-286] 1.1E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 43.694 % | 339 | 8.34E-109 |
| FXR2_HUMAN | 53.165 % | 338 | 4.85E-108 |
| FMR1_HUMAN | 55.078 % | 276 | 1.35E-84 |