- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S553.g10011.03.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
S553 [93,086 / 103,921]
Amino acid sequence
Length: 601
>Phmamm.CG.MTP2014.S553.g10011.03.p
SWQAERKISLAEARFAPTPEESDIGDDDLVEGQEIEVHTRANEIEPCGWWLAKVKMSKGE
FHVIEYQSCKPKHTEIVTRDRLRNVNTQPLLSVSPILKVSLPVPEDLQDFCAKYIDAHKE
FEKSTGSILVRYNAESKSLDILVPNESAKTRASIVSDLHFRSLRTKLSMLQKVEEAAKQL
EVSQQKATSCTEHFHVADDLIGLAIGTNGTNIIAARRVPGVIDIILDEETHNFTVYGETK
DAVLKAREILEFMETEVLVPRPFVGKVIGKKGVTIQEMIDKSGVLRVRVIGDDENEPTNR
TDGLVPFRFVGTRENIHNAQALLNYHVAYLKDLDNIRLEQINLNQKIKQLGTGTHGPGSG
LPPRGDDGEPRRHQRPNRRYNDERRNRSDREGGTASELSNVSDTGSETGDSMAEGKPLTR
REYGPGADPRYNRGRGGYRGRGNYRGGGRGNSQTGYQERQHPNMKNTILADPNRNPYDVL
SNDDEGGSREDSPQGAPNGRFEKGDRPHGGDGGYRGNRGRRGRGGNRGGGYHNNHNQQNP
NGGEMPNRGPIKQGKKSPDNDQKPNGDKKPTQDDAKEQRPPRKTGPISNTKKPVAEVNGV
A
Nucleotide sequence
Length: 3,378
>Phmamm.CG.MTP2014.S553.g10011.03.t
TAGCTGGCAAGCTGAAAGAAAGATTAGTCTTGCAGAAGCAAGATTTGCACCCACACCTGA
AGAATCTGATATTGGTGATGATGACCTTGTTGAAGGACAAGAAATTGAGGTTCACACACG
AGCTAATGAGATTGAACCATGTGGATGGTGGCTTGCCAAAGTAAAAATGAGCAAAGGTGA
ATTTCATGTGATCGAGTACCAATCATGCAAGCCCAAACACACAGAAATCGTAACCAGAGA
CAGACTCCGTAACGTCAACACTCAACCACTTCTTAGTGTTTCTCCAATACTCAAAGTCTC
GCTGCCTGTACCAGAAGATCTACAAGACTTCTGTGCCAAATACATTGATGCTCACAAGGA
GTTTGAGAAGAGCACTGGTTCTATTTTGGTGAGGTACAATGCTGAGTCAAAAAGTCTAGA
CATCCTTGTTCCAAATGAATCAGCAAAAACACGAGCTTCCATTGTATCTGACTTGCACTT
CAGAAGTCTCCGTACAAAACTCTCCATGCTGCAGAAAGTGGAAGAGGCAGCTAAACAACT
AGAGGTTAGCCAACAAAAAGCCACATCATGCACTGAGCACTTTCATGTCGCTGACGATCT
TATTGGGCTTGCGATTGGTACCAATGGAACAAACATCATAGCGGCGCGCCGTGTTCCTGG
GGTTATTGATATTATACTGGATGAGGAAACACACAACTTTACTGTGTATGGTGAAACCAA
GGATGCAGTCTTAAAAGCACGAGAAATTTTGGAATTTATGGAAACTGAAGTTCTAGTGCC
TCGGCCATTTGTGGGCAAAGTAATTGGAAAGAAGGGTGTCACAATTCAAGAAATGATTGA
CAAATCAGGTGTTCTGCGAGTTCGTGTGATCGGTGATGATGAAAATGAACCTACAAATCG
AACTGACGGCCTCGTGCCATTTCGCTTTGTTGGGACAAGAGAAAATATTCATAATGCACA
GGCTCTGCTTAACTACCATGTGGCCTACCTTAAGGATTTGGATAACATCAGACTGGAACA
AATTAACCTGAACCAGAAAATCAAACAACTTGGCACAGGCACACATGGCCCTGGCTCTGG
CCTGCCACCTCGTGGTGATGATGGCGAACCTCGCAGACACCAACGTCCCAATCGAAGATA
TAACGATGAAAGAAGAAACCGCTCAGACCGTGAAGGCGGAACCGCGTCGGAATTATCCAA
CGTTTCTGATACTGGGTCCGAGACTGGAGACTCGATGGCAGAGGGAAAACCCCTAACTCG
CAGGGAGTACGGACCTGGGGCAGACCCCAGATACAATCGTGGACGGGGTGGTTACCGAGG
AAGGGGTAACTACCGTGGGGGTGGTAGGGGAAATTCCCAAACGGGGTACCAAGAGAGACA
GCACCCGAATATGAAAAATACCATTCTGGCCGATCCCAACCGAAACCCATACGACGTTCT
TTCTAACGACGACGAGGGAGGATCACGTGAAGATTCGCCCCAGGGCGCCCCTAACGGTCG
ATTTGAGAAAGGGGATCGCCCGCATGGTGGGGATGGTGGTTATCGTGGAAATCGGGGACG
CAGAGGCCGTGGTGGAAACAGAGGTGGCGGATACCATAACAATCATAATCAACAAAACCC
TAATGGCGGTGAAATGCCAAATAGAGGTCCGATAAAGCAAGGCAAGAAATCACCGGACAA
TGACCAGAAACCGAACGGGGACAAAAAGCCGACGCAAGATGATGCTAAAGAGCAGCGGCC
TCCGCGCAAAACAGGCCCCATTTCCAACACGAAGAAACCAGTGGCTGAAGTAAACGGCGT
GGCGTGAACGCAACCCTTTGCTGATCCGATTTCGCCTTACCATCCGGCCGTTCTTGTATT
TATTTCCCAAACCTTGATTTGATTGCTTCTTCTTTGATTTACGCCTTATTGGTGTGTTCA
AAACTTTCTGAAATATTCTCCACAAAATGGGCAAGTTTGGCCTTTTACTCAACTTGCAGT
ACCCTGGTATTTAAGAATGGGTTTGTGATTAGGTCATTGTTCAGGAAATGGCTTGACATT
ATCCATACACATCTAGTGTGCTGCATGAATAGCATGTTCTTTTTGCCGTCGGTGGCGTTT
ACTGTATTGAATAGGATTTCATCCTAATACCACATGTTACTGTGTATTCTGTCTTGCATG
TTTACCGATTGACCCAGTTTCCAAATGATACTTGATTTCTACTAACTTCACTACATAATA
CAAGCCTGTGTGCCCACTGGCATTAGGCTTTCAAAATATTTGATGTAGAAATAAGGTTTG
AAATTTTGACCCCTTTTCTGATTGGTCGATTTTTGGGTGTTGTGACCCCAGCGCAGCTGA
AGAGGGGTGGAATTCCCCGAAACCAAGTCCTGTCCATGGGTCACTCACCCCTAGTAGCCA
GTTTGCTTGTCAGAAGAAATAGTGTTTAAGAGTTCCCAATTGTTTGTACATTTAGTGGTT
ATCTACAAACACAACGCTGAAGCATTAATTTGTTTGTATTAGTTCGTATTGTGTGCCTTT
GAATGCTACGAATTTTGTTGGAACTGGATTGCTCTTTGTGCATAACCCCCCACCTTATTT
ACCTGCGTTTTCGCATAGTTGAAAAGCGCTACCAATGCTAGTGTTTGTGCAAAACACCAC
ATGCACTACCTAAGGACATCATTAGTTTGCCCAAAAATTTGCAAATATACCCAGCAAATC
CGTAGTTTCAACAAGCATTGGACTTTCCGCTCGAACAATACATCTTGAAACTGAATATTT
TCTTCTAAACCTTCACATCTAAGTTTCTTACTAAACCTAATATGCGACATTATTCTATAT
TTGTTTGTGTTTGGAACAAGCAATTGATAAATTGGGGTTTAATTTTGCATGTACTTGTCT
TGGAATATAACTTGGGCCCTAAACTCATCACACAACACATTTCTATTACCAGAATGTGTT
CAGAAGTTATCCACTCTCAAGCGTTTGCGTTTATACTGTGTTGTGTCTTTCTATTTTAAC
CTTCTAGCCAATAGACTCTAATCGATGTCTATGGGTATACAACACTTCAACAGAAAGACT
TAAAAGCCCATGTACCTTGCGATTGGTGCTGATCTTTTGCTAACGGCCTGTACAAGACAC
TTTGTTTGCCTGTCACTGTGCACTTTTATGAATAATTACGCATGTCGTCGATAAGATATC
CCTCCGTAACGCACAACATCCACAAAAATAAATATTGCTGTGTCCCTGAAGATCCAACAA
AGATTGTAGTAGTTGTAGATTTTTCTGTGTCACCTTTTAATGACATTTTGTAAATGTAAC
TACGGTGCTCCAAAAGGGTTCCGCTTTTTTTCAACGTTTCAGTGAGTTCATTTTGCGGCA
ACGGTATTGTTCTTGGTA
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[33-85] 20.884 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[188-251] 1.5E-23 - T[252-331] 2.2E-22 |
| SMART |
KH_dom (IPR004087) - T[188-254] 0.011 - T[255-328] 0.004 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[188-256] 2.15E-9 - T[252-329] 1.31E-10 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[255-324] 1.2E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 43.451 % | 362 | 8.44E-118 |
| FXR2_HUMAN | 50.568 % | 362 | 6.58E-117 |
| FMR1_HUMAN | 52.381 % | 296 | 3.17E-92 |