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- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S553.g10011.05.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
S553 [94,657 / 104,246]
Amino acid sequence
Length: 658
>Phmamm.CG.MTP2014.S553.g10011.05.p
MDQRIIEVRGSNTAFYKAYLKDVLPDGVTVTFENNWQAERKISLAEARFAPTPEESDIGD
DDLVEGQEIEVHTRANEIEPCGWWLAKVKMSKGEFHVIEYQSCKPKHTEIVTRDRLRNVN
TQPLLSVSPILKVSLPVPEDLQDFCAKYIDAHKEFEKSTGSILVRYNAESKSLDILVPNE
SAKTRASIVSDLHFRSLRTKLSMLQKVEEAAKQLEVSQQKATSCTEHFHVADDLIGLAIG
TNGTNIIAARRVPGVIDIILDEETHNFTVYGETKDAVLKAREILEFMETEVLVPRPFVGK
VIGKKGVTIQEMIDKSGVLRVRVIGDDENEPTNRTDGLVPFRFVGTRENIHNAQALLNYH
VAYLKDLDNIRLEQINLNQKIKQLGTGTHGPGSGLPPRGDDGEPRRHQRPNRRYNDERRN
RSDREGGTASELSNVSDTGSETGDSMAEGKPLTRREYGPGADPRYNRGRGGYRGRGNYRG
GGRGNSQTGYQERQHPNMKNTILADPNRNPYDVLSNDDEGGSREDSPQGAPNGRFEKGDR
PHGGDGGYRGNRGRRGRGGNRGGGYHNNHNQQNPNGGEMPNLDSDFPPLIDWADSVESAN
DFIDRGPIKQGKKSPDNDQKPNGDKKPTQDDAKEQRPPRKTGPISNTKKPVAEVNGVA
Nucleotide sequence
Length: 1,977
>Phmamm.CG.MTP2014.S553.g10011.05.t
ATGGATCAAAGAATAATTGAAGTGCGTGGTTCGAACACTGCCTTCTATAAGGCCTATTTG
AAAGATGTCTTACCAGATGGAGTCACTGTGACTTTTGAAAACAACTGGCAAGCTGAAAGA
AAGATTAGTCTTGCAGAAGCAAGATTTGCACCCACACCTGAAGAATCTGATATTGGTGAT
GATGACCTTGTTGAAGGACAAGAAATTGAGGTTCACACACGAGCTAATGAGATTGAACCA
TGTGGATGGTGGCTTGCCAAAGTAAAAATGAGCAAAGGTGAATTTCATGTGATCGAGTAC
CAATCATGCAAGCCCAAACACACAGAAATCGTAACCAGAGACAGACTCCGTAACGTCAAC
ACTCAACCACTTCTTAGTGTTTCTCCAATACTCAAAGTCTCGCTGCCTGTACCAGAAGAT
CTACAAGACTTCTGTGCCAAATACATTGATGCTCACAAGGAGTTTGAGAAGAGCACTGGT
TCTATTTTGGTGAGGTACAATGCTGAGTCAAAAAGTCTAGACATCCTTGTTCCAAATGAA
TCAGCAAAAACACGAGCTTCCATTGTATCTGACTTGCACTTCAGAAGTCTCCGTACAAAA
CTCTCCATGCTGCAGAAAGTGGAAGAGGCAGCTAAACAACTAGAGGTTAGCCAACAAAAA
GCCACATCATGCACTGAGCACTTTCATGTCGCTGACGATCTTATTGGGCTTGCGATTGGT
ACCAATGGAACAAACATCATAGCGGCGCGCCGTGTTCCTGGGGTTATTGATATTATACTG
GATGAGGAAACACACAACTTTACTGTGTATGGTGAAACCAAGGATGCAGTCTTAAAAGCA
CGAGAAATTTTGGAATTTATGGAAACTGAAGTTCTAGTGCCTCGGCCATTTGTGGGCAAA
GTAATTGGAAAGAAGGGTGTCACAATTCAAGAAATGATTGACAAATCAGGTGTTCTGCGA
GTTCGTGTGATCGGTGATGATGAAAATGAACCTACAAATCGAACTGACGGCCTCGTGCCA
TTTCGCTTTGTTGGGACAAGAGAAAATATTCATAATGCACAGGCTCTGCTTAACTACCAT
GTGGCCTACCTTAAGGATTTGGATAACATCAGACTGGAACAAATTAACCTGAACCAGAAA
ATCAAACAACTTGGCACAGGCACACATGGCCCTGGCTCTGGCCTGCCACCTCGTGGTGAT
GATGGCGAACCTCGCAGACACCAACGTCCCAATCGAAGATATAACGATGAAAGAAGAAAC
CGCTCAGACCGTGAAGGCGGAACCGCGTCGGAATTATCCAACGTTTCTGATACTGGGTCC
GAGACTGGAGACTCGATGGCAGAGGGAAAACCCCTAACTCGCAGGGAGTACGGACCTGGG
GCAGACCCCAGATACAATCGTGGACGGGGTGGTTACCGAGGAAGGGGTAACTACCGTGGG
GGTGGTAGGGGAAATTCCCAAACGGGGTACCAAGAGAGACAGCACCCGAATATGAAAAAT
ACCATTCTGGCCGATCCCAACCGAAACCCATACGACGTTCTTTCTAACGACGACGAGGGA
GGATCACGTGAAGATTCGCCCCAGGGCGCCCCTAACGGTCGATTTGAGAAAGGGGATCGC
CCGCATGGTGGGGATGGTGGTTATCGTGGAAATCGGGGACGCAGAGGCCGTGGTGGAAAC
AGAGGTGGCGGATACCATAACAATCATAATCAACAAAACCCTAATGGCGGTGAAATGCCA
AATCTAGATTCGGATTTTCCTCCATTAATTGATTGGGCAGATTCTGTTGAGTCAGCAAAT
GACTTTATTGATAGAGGTCCGATAAAGCAAGGCAAGAAATCACCGGACAATGACCAGAAA
CCGAACGGGGACAAAAAGCCGACGCAAGATGATGCTAAAGAGCAGCGGCCTCCGCGCAAA
ACAGGCCCCATTTCCAACACGAAGAAACCAGTGGCTGAAGTAAACGGCGTGGCGTGA
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[3-50] 12.087 - T[67-119] 20.884 |
| SMART |
KH_dom (IPR004087) - T[222-288] 0.011 - T[289-362] 0.004 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[222-290] 2.47E-9 - T[286-363] 1.49E-10 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[222-285] 1.7E-23 - T[286-365] 2.5E-22 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[289-358] 1.3E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 44.574 % | 406 | 7.49E-134 |
| FXR2_HUMAN | 51.832 % | 404 | 2.66E-132 |
| FMR1_HUMAN | 53.495 % | 344 | 9.36E-110 |