- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S56.g02045.02.t
Possible name(s)
LAMA1; LAMA2; LAMA3
Gene model
Location
S56 [90,156 / 102,325]
Amino acid sequence
Length: 1,958
>Phmamm.CG.MTP2014.S56.g02045.02.p
IVMQTLMQASQTISMEYAKSTHTNRSVIYIPSRHLRVLRRTDETLFPDLHLPQENNKSLA
RNERGLFGKTLIRRRGRISLGQILAIARDLCPCGVRELNNTKQYYYSIKDISIGGMCICY
GHASTCPTDSRTGIFRCACEHNTVGPNCEQCLPGFQQYKWRPGNDGFQCEACNCHGHSDD
CFYDEGVAERRESLNQLGEYLGGGVCVGCKDNTEGINCQTCIDGFYRPYAAEPDDVNPCV
SCDCDPYGGRRVPSRTGPYVCVKDITFIDSENDLYPGSCYCNEGFAGSRCDRCVFGYRGF
PRCDPCPCNVAGSRNVDPCVGECVCKANVVGEGCSQCKTGYFNMQRDNPSGCERCYCSGV
ALNCASADLRWSTIHTNHNWEVRDRRNRRRVTPQFDYDLNEPYVEHGQTARDLGTAMYYW
AAPVQYLGERLSSYGGTLRYTVSYDILQGSQALPIQDADVIMEGNGRSLTYNYMGSLVYP
QEETEVLIKLEANKDRDVSGWVDSNSLLPASKEEIMTVLQHVTRLYIRAVYSRNAGAVYR
IRDVYMQAATENGEGATAHSVEKCRCPPGYTGFSCENCAGGYWRSGRMCLPCQCNGHSNS
CNPLNGACENCQHNTMGMHCERCKPGFYGDSTTGTRDDCQMCSCPLPIASNNFSPLCYLD
RTTSEMVCLKCPTGYAGKRCETCEQGYFGDPTTPGGSCQLCECNGNSQSCDSLTGVCTYC
RGHTSGKHCEVCEPAYYGDAIERKNCGPCECNAVGSVSRQCHLVTGQCSCRPGVYGRKCD
ACESGHYLSAEERMCVACECDATGSLSEQCGADGSCICRSGVEGRRCNSCARGYFAFSEL
GCIECNCQHTNGNCDTQTGECICPTNTHGSECSQCVENAFGIDSVNGCELCNCSDVGSLF
TNTCDNSTGQCTCKPEYDGRQCNTCKRGFYGYPNCRPCNCNKIGTAADECDESRNGSCNC
QNDGQCVCKANVVGKQCDQCGEGYFGLSESNPLGCSECFCFGAADLCIAAQGYSWGPPIA
LNSAPVEVLNPSGMANRIEGLIATRDAEVRDADVVIRDIHSQPYYWRLPEQFNGDKLLSY
GGKLRYTIYHVSQVSFEDEEIVKPSVVLKGGRGSKITIQYQLDSPQTGQSRDYVVSMREL
GWTHLDTSRSVTRAEFATILSDIEFFLIKATYGRLMGQSRLSNVFLDIAQTMIRGRGDAG
SNYPPATSIEQCFCYPGYTGSSCQNCDSGYMRIQQGSNYGRCEACNCNNRSSTCDIMTGV
CLNCQDKFIGVQCEMCSPGYYLSGNECRKCACPGPDPFQNFSPNCHPDGADGIADYTCDA
CKTGYEGKHCERCSDGYYGDPTHPGGFCAKCGCNVAGSLDGVCDKVTGQCRCDEGISGRI
CDQCMPRHIISHSGCQECNDGCSSKLLDDIEILTYRASRVKIHTMFPPPWDRLIAARNLT
QQLQKRVENETEEILNRLAVVVSVPDRISATQRNISSLQPQANECKNSGKITVSDVRETK
QRLKTQKTSTRFLSNVIEGFSRTLSRFVHQLRNGTTEEIIGMEDKLEGWVNTMRQRSFDN
LRKIAYEELETSAVFLDMVAANFTAQYLSRLDSIRTEQSEIVNNLTNVMETFDEFRYLLG
NSTSIVAVTNTMNQLNQQTLRQTKSNMERVNNRATIVGVSLSNSESQVEDTRILIQNASA
AMANLGVVFNGLLAELPPLRKIRDGLMGGVDAVVPHFKDALRHVTDLQSDVQYIKSVHRN
ITEFSYNQTEAATRWTQIANKFDLTDQRADSAVTLSMDALNSITTDLGKRSEVSLQRSQD
INDAVTSMENNLNGDRRLLRNQNEALRYENQSVADLAKQHERIQTRLKDTRKQSKTTLKR
VRNAVNQATKKLIGLKKSLYQSDNTLRQLQKTEMDVSQRSFVINETTSNMAAVPVSINRG
FEASERASSLAKRVKLRSDSMRSNITLIRKLIEDTKAK
Nucleotide sequence
Length: 5,876
>Phmamm.CG.MTP2014.S56.g02045.02.t
CCATCGTTATGCAAACATTGATGCAAGCATCGCAGACAATATCGATGGAATATGCAAAAA
GTACACATACAAATCGAAGTGTAATATACATACCAAGCAGACATTTACGCGTTTTGAGGA
GAACTGACGAAACCCTTTTTCCGGATTTACATTTACCCCAGGAAAATAACAAAAGTTTGG
CCAGAAACGAAAGAGGTTTATTTGGCAAAACGCTGATACGGCGTCGAGGTCGTATTTCTC
TCGGTCAAATACTGGCGATAGCCCGCGATCTGTGCCCGTGTGGTGTCAGGGAGTTAAACA
ACACCAAACAGTATTATTACTCGATCAAAGACATCAGTATCGGCGGAATGTGCATTTGTT
ACGGCCACGCCAGTACTTGTCCAACAGATTCAAGAACAGGGATTTTCAGATGTGCTTGTG
AACACAACACTGTGGGCCCGAATTGTGAACAATGCCTTCCCGGCTTTCAACAATACAAGT
GGAGACCGGGCAACGATGGATTTCAGTGTGAAGCGTGCAACTGCCACGGACACTCAGACG
ATTGTTTCTACGACGAAGGGGTTGCCGAAAGAAGAGAAAGTTTGAACCAATTGGGTGAAT
ACCTTGGCGGAGGCGTTTGCGTGGGATGCAAGGATAATACAGAGGGAATTAATTGTCAAA
CGTGCATCGACGGATTTTACCGCCCTTATGCAGCAGAGCCGGACGACGTCAACCCTTGTG
TGAGTTGCGATTGCGATCCGTATGGCGGCCGAAGAGTGCCATCGCGCACCGGACCGTACG
TTTGCGTCAAAGATATTACGTTTATCGACAGTGAAAACGACCTTTATCCGGGTTCATGTT
ACTGCAATGAGGGATTCGCCGGAAGCAGATGCGACAGGTGTGTTTTTGGATATCGTGGAT
TCCCTCGCTGTGATCCTTGTCCTTGCAATGTCGCTGGAAGTCGCAATGTCGATCCTTGCG
TTGGTGAATGTGTTTGCAAAGCCAACGTTGTGGGCGAAGGTTGTTCCCAATGCAAGACAG
GATACTTTAACATGCAACGCGACAACCCTAGCGGCTGCGAGAGGTGTTACTGCAGTGGCG
TCGCGCTGAATTGCGCCTCGGCCGATCTAAGATGGTCTACAATACACACAAACCACAACT
GGGAAGTGCGAGACAGACGAAACCGACGTCGAGTGACGCCGCAGTTCGATTACGATCTCA
ACGAGCCTTACGTGGAACACGGACAAACAGCACGTGACCTAGGCACAGCCATGTACTACT
GGGCAGCGCCCGTACAATATTTAGGAGAGCGCCTGTCATCGTATGGTGGAACATTGCGCT
ACACTGTGTCCTATGATATTCTGCAAGGTTCACAAGCGCTGCCAATTCAGGATGCCGACG
TTATAATGGAGGGAAACGGAAGATCCTTAACATACAACTACATGGGAAGTTTGGTTTATC
CACAAGAAGAAACCGAAGTTTTAATCAAACTGGAAGCCAATAAGGATAGGGATGTATCTG
GTTGGGTTGATTCCAATTCCCTGCTACCAGCGAGCAAAGAGGAAATCATGACAGTTCTTC
AACACGTGACCCGCCTGTACATCAGAGCAGTTTACAGCAGAAATGCTGGAGCAGTTTACA
GAATACGGGATGTGTACATGCAAGCAGCAACGGAAAATGGAGAAGGAGCAACAGCACATT
CAGTAGAGAAATGTCGTTGCCCTCCGGGCTACACCGGATTCTCCTGTGAGAACTGCGCAG
GGGGTTACTGGAGGAGCGGAAGGATGTGTCTACCCTGTCAGTGTAACGGACATTCAAATT
CTTGTAACCCACTAAATGGTGCCTGTGAGAATTGCCAACATAACACGATGGGAATGCACT
GCGAACGATGTAAACCTGGATTCTACGGTGATTCCACAACAGGAACTCGAGATGATTGTC
AAATGTGTTCCTGTCCACTACCGATCGCCAGCAACAACTTCAGTCCGCTGTGCTATTTGG
ATCGCACCACATCAGAAATGGTTTGCCTAAAATGCCCGACAGGTTACGCCGGAAAGAGAT
GCGAAACATGCGAGCAAGGTTACTTCGGCGACCCGACAACACCTGGTGGATCATGTCAAC
TCTGCGAATGCAATGGAAACTCCCAATCGTGTGACTCACTCACTGGGGTGTGCACTTATT
GCAGAGGACACACATCAGGAAAACATTGCGAAGTCTGTGAACCAGCATACTACGGAGACG
CGATCGAGCGAAAAAACTGCGGACCGTGTGAATGCAACGCGGTGGGGTCGGTGAGCCGTC
AGTGCCATCTTGTCACGGGTCAGTGCTCGTGCAGGCCTGGTGTTTACGGGAGGAAGTGTG
ACGCGTGTGAGAGCGGCCATTACCTCAGCGCAGAGGAACGCATGTGCGTGGCGTGTGAAT
GCGATGCCACTGGGAGTCTTTCAGAGCAGTGCGGTGCCGACGGATCTTGCATTTGCCGTT
CGGGTGTGGAGGGACGACGCTGCAATTCGTGTGCGCGTGGATACTTTGCATTCAGCGAAC
TTGGCTGCATAGAATGTAACTGCCAGCACACCAATGGAAACTGCGACACACAAACAGGAG
AGTGCATCTGTCCTACAAACACACACGGCTCTGAATGTAGCCAGTGTGTGGAAAACGCAT
TTGGGATTGACAGTGTGAATGGGTGCGAGCTGTGTAACTGCAGTGATGTTGGTTCTCTGT
TTACAAACACGTGCGATAACTCAACCGGCCAATGTACATGCAAACCCGAATACGACGGCA
GACAATGTAACACTTGCAAGCGTGGATTCTACGGTTATCCCAACTGCAGACCGTGCAACT
GCAACAAAATAGGCACCGCTGCAGACGAATGTGATGAGTCTAGAAATGGTTCGTGTAATT
GCCAAAACGATGGTCAATGTGTATGCAAGGCAAACGTGGTTGGAAAACAATGTGATCAAT
GCGGCGAAGGATACTTCGGTCTGAGTGAAAGCAACCCACTAGGATGCAGCGAGTGCTTCT
GTTTCGGAGCAGCAGACCTCTGCATCGCTGCTCAGGGATACTCCTGGGGTCCTCCGATTG
CGCTTAATTCGGCGCCAGTAGAGGTTTTGAACCCCTCTGGTATGGCGAACAGAATTGAGG
GTCTCATCGCTACCAGAGATGCTGAGGTACGTGATGCAGATGTTGTGATACGGGATATAC
ACAGTCAACCATACTACTGGCGTCTTCCGGAACAGTTTAACGGCGACAAGTTGCTTTCCT
ACGGAGGCAAACTGAGGTATACAATATACCATGTCTCCCAAGTATCGTTTGAAGATGAAG
AAATCGTAAAGCCAAGTGTAGTTTTAAAAGGCGGTCGGGGAAGCAAAATAACCATTCAGT
ATCAGTTGGACAGCCCTCAAACCGGCCAGAGCAGAGATTATGTCGTTTCAATGCGTGAGC
TTGGGTGGACACACCTAGACACCAGCAGAAGTGTGACTCGAGCCGAATTTGCAACAATCC
TTAGTGACATCGAGTTTTTCCTGATCAAGGCAACATACGGCCGCTTGATGGGGCAGTCGA
GGCTGAGCAACGTTTTTCTGGATATCGCCCAAACCATGATACGAGGACGTGGCGATGCAG
GCTCCAATTATCCACCTGCAACAAGTATTGAACAATGCTTTTGCTACCCAGGATATACAG
GTTCCTCTTGTCAGAACTGTGACAGCGGATATATGAGAATCCAACAGGGTTCAAACTATG
GACGGTGTGAAGCTTGCAACTGCAACAACCGAAGTAGCACTTGCGACATAATGACAGGGG
TCTGTTTGAACTGCCAGGACAAGTTCATTGGTGTCCAGTGTGAAATGTGCTCGCCGGGAT
ACTACCTGTCAGGTAACGAATGCAGGAAATGTGCGTGCCCTGGACCAGATCCTTTCCAAA
ATTTCAGCCCCAATTGCCACCCGGATGGAGCGGACGGAATCGCCGATTATACGTGCGATG
CATGTAAAACAGGATACGAAGGAAAACATTGTGAACGGTGCTCGGATGGCTACTACGGGG
ATCCTACCCACCCTGGAGGTTTCTGTGCCAAGTGCGGATGCAACGTCGCAGGTTCCCTGG
ATGGTGTTTGCGACAAGGTCACAGGGCAATGCCGATGCGATGAAGGCATCTCGGGTAGAA
TTTGTGACCAATGTATGCCACGACATATTATCTCCCACTCCGGGTGCCAAGAATGCAATG
ATGGTTGTTCCAGCAAACTTCTCGACGATATTGAAATTTTGACCTACAGGGCGTCAAGAG
TGAAAATTCACACAATGTTTCCACCGCCTTGGGATCGACTTATAGCAGCTCGCAACCTTA
CACAACAGCTTCAGAAACGTGTTGAAAACGAAACAGAAGAAATCTTGAACCGCTTGGCTG
TTGTAGTGTCAGTTCCTGACAGGATCAGTGCCACACAACGCAACATATCATCACTGCAAC
CACAAGCCAATGAATGCAAAAACAGTGGCAAGATTACAGTATCCGATGTTCGTGAAACCA
AACAACGACTAAAGACCCAGAAGACTTCTACACGATTTTTGTCCAACGTAATAGAAGGAT
TTTCACGCACACTATCACGATTCGTGCATCAGCTGCGAAACGGAACCACAGAGGAGATAA
TTGGAATGGAGGACAAGCTTGAGGGTTGGGTTAATACTATGCGCCAGAGGAGTTTTGACA
ACTTGCGGAAAATAGCTTATGAAGAACTGGAGACCTCGGCTGTCTTTTTGGATATGGTTG
CAGCAAACTTTACTGCACAATACTTATCAAGGTTAGACTCTATTCGCACTGAGCAAAGCG
AAATAGTAAACAATCTTACCAATGTTATGGAAACCTTTGACGAGTTTCGGTATCTCCTCG
GCAACAGCACATCGATAGTCGCTGTAACGAACACAATGAACCAACTTAACCAACAAACTC
TGAGACAGACAAAGAGCAACATGGAAAGAGTCAACAACAGGGCTACCATAGTTGGTGTGA
GCCTATCCAACTCAGAATCACAAGTCGAAGATACTCGTATTCTGATACAAAATGCAAGCG
CTGCTATGGCGAACTTAGGCGTCGTTTTCAACGGGCTGTTGGCTGAATTGCCACCACTTC
GCAAAATTAGAGATGGTTTAATGGGTGGTGTGGATGCAGTAGTGCCTCATTTCAAAGACG
CTCTTCGGCACGTAACTGACTTGCAGTCGGATGTCCAATACATCAAAAGTGTGCACCGCA
ATATAACCGAATTTTCGTACAACCAAACCGAAGCAGCTACCCGCTGGACACAGATTGCAA
ACAAATTTGATCTTACCGATCAAAGAGCCGATTCCGCGGTGACTCTGTCTATGGATGCGC
TTAACTCCATCACGACAGACCTTGGCAAAAGATCGGAGGTGTCGTTGCAGAGAAGCCAAG
ACATTAATGATGCGGTAACCTCGATGGAAAACAATCTTAACGGCGATCGGAGGTTACTTC
GCAATCAGAACGAGGCTTTGAGATATGAAAACCAATCGGTCGCAGATCTTGCTAAACAAC
ACGAACGAATTCAAACCAGACTCAAAGACACTCGAAAACAATCGAAGACAACATTGAAAC
GAGTTAGAAATGCTGTTAACCAAGCCACAAAAAAACTTATTGGTCTTAAAAAGAGCCTAT
ATCAGTCGGACAACACTTTAAGGCAATTGCAGAAAACTGAAATGGATGTTTCACAACGCT
CATTTGTAATAAACGAGACTACAAGCAATATGGCTGCGGTTCCTGTATCCATCAACCGGG
GGTTCGAAGCATCGGAGCGCGCATCTTCATTGGCAAAGCGAGTCAAACTCCGCAGCGATA
GCATGCGGTCAAACATCACCCTTATCCGGAAATTGATTGAGGATACCAAAGCAAAA
| Gene3D |
Laminin_N_sf (IPR038684) - T[71-140] 1.6E-12 |
| Pfam |
Laminin_EGF (IPR002049) - T[117-163] 1.4E-4 - T[172-228] 8.0E-4 - T[242-302] 7.1E-4 - T[306-352] 7.2E-6 - T[563-585] 0.0094 - T[592-639] 2.3E-9 - T[642-698] 3.5E-6 - T[701-746] 2.6E-7 - T[749-791] 6.7E-11 - T[798-838] 3.8E-7 - T[845-888] 3.1E-4 - T[891-934] 5.9E-9 - T[938-995] 2.5E-8 - T[1211-1237] 0.0099 - T[1245-1290] 2.2E-7 - T[1351-1398] 3.7E-6 |
| SMART |
Laminin_EGF (IPR002049) - T[117-169] 3.2E-4 - T[172-239] 8.3E-7 - T[242-303] 0.0013 - T[306-352] 0.0017 - T[592-639] 3.8E-14 - T[642-698] 1.5E-6 - T[701-746] 1.1E-7 - T[749-795] 2.8E-11 - T[798-842] 1.4E-8 - T[845-888] 0.013 - T[891-935] 5.2E-10 - T[938-995] 1.7E-9 - T[1245-1287] 9.6E-11 - T[1290-1348] 2.6E-6 - T[1351-1395] 2.8E-7 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[117-171] 12.102 - T[172-241] 10.826 - T[242-305] 9.189 - T[306-354] 13.206 - T[552-591] 6.351 - T[592-641] 19.509 - T[642-700] 9.817 - T[701-748] 14.73 - T[749-797] 18.233 - T[798-844] 15.472 - T[845-890] 8.617 - T[891-937] 19.7 - T[938-997] 17.129 - T[1245-1289] 12.197 - T[1304-1350] 12.635 - T[1351-1397] 13.054 |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[137-169] . - T[323-357] . - T[608-644] . - T[768-800] . - T[911-940] . - T[966-1000] . - T[1318-1353] . |
| SMART |
EGF-like_dom (IPR000742) - T[238-291] 84.0 - T[591-640] 70.0 - T[656-699] 160.0 - T[760-796] 230.0 - T[799-843] 43.0 - T[892-936] 25.0 - T[949-996] 29.0 - T[1253-1288] 25.0 - T[1289-1331] 25.0 - T[1347-1382] 240.0 |
| ProSiteProfiles |
Laminin_IV (IPR000034) - T[375-563] 33.473 - T[1021-1211] 31.563 |
| SMART |
Laminin_IV (IPR000034) - T[414-551] 2.4E-26 - T[1060-1191] 2.3E-34 |
| Pfam |
Laminin_IV (IPR000034) - T[419-562] 4.2E-31 - T[1065-1195] 4.5E-29 |
| SMART |
TNFR/NGFR_Cys_rich_reg (IPR001368) - T[578-608] 12.0 - T[782-818] 9.1 - T[925-958] 40.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMA1_HUMAN | 35.982 % | 1182 | 0 |
| LAMA2_HUMAN | 36.467 % | 1212 | 0 |
| LAMC1_HUMAN | 35.024 % | 423 | 1.31E-121 |