- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S585.g10304.02.t
Possible name(s)
RNF144A; RNF19A; RNF19B
Gene model
Location
S585 [20,555 / 31,819]
Amino acid sequence
Length: 735
>Phmamm.CG.MTP2014.S585.g10304.02.p
MSSGDVNTPSQKTRRFPRFRIRTGVFSRNKRCSAKSDKKADAVNINSDTSAPSTSAYKNE
SKNTKPDEKLSLGASAVAETKIEAKAESSAKSTSSVLECPLCLVTQSIENFPQLSTCHHR
SCMDCLRQYLAIEISESRVNLMCPECQERLHPVDMKSILDTNPQLMQKWEEFTLRRFLSI
DPDCRWCPAPDCGFAVIASGCASCPRLKCQRDGCETEFCYHCRQEWHPDQTCDAAHLQRR
KQLRIRNNSVAYSQGSNFHDEIKPCPKCGALIVKMNDGSCNHMTCTVCDAEFCWLCLQEI
TDLHYLSPSGCTFWGKKPWSRKKKILWQLGLLIGAPLGIGLVAGIAVPAIIVGLPVWVAR
RIMAQFENKENVSKYKRNLLVATCVAGSVILSPALAALAVGVGVPVMLLYVYGVVPFSLC
RTGSYGITSRNPNGSNSALSMLPMGLRLDLGGTSGQPGSSTAEDTGNFHSGNGSINTRLG
PINPSIGEASVGGMTMGSFNMSRGSNMDKVGRIDPDGASTIAIAGTSITGSLSGISGAGA
LGSNKVEVHHSTKDVDQQSTHTQISVGSAPNITSVQVHMHDNVSEHSVTSAPINSYVPPG
SAIKKSYSAKSLGSKRKTKPIKSDTETVFAILGSSASAKVPGLKKTSIDEPHGLPVVDDM
SPHHTSDISTAPKMGTVDENASASITITPEMKSSPNSSEDATCDASSCSSNNPLLSSPTI
SIETTLSSDVTEVIV
Nucleotide sequence
Length: 2,208
>Phmamm.CG.MTP2014.S585.g10304.02.t
ATGTCATCTGGGGATGTAAATACACCGAGCCAAAAAACAAGAAGGTTTCCACGGTTCAGG
ATACGCACAGGCGTTTTTTCAAGGAACAAGCGGTGCAGTGCAAAAAGTGACAAGAAAGCA
GATGCTGTGAATATTAATTCCGACACTAGTGCCCCATCTACATCTGCCTACAAAAATGAA
TCGAAAAACACAAAACCCGATGAAAAACTCTCATTAGGAGCTTCTGCAGTTGCTGAGACA
AAGATAGAAGCCAAAGCAGAATCAAGTGCCAAAAGTACCTCAAGTGTATTAGAATGCCCG
CTTTGCCTTGTAACACAGTCAATAGAAAACTTTCCCCAACTGAGTACATGCCATCACCGG
TCGTGCATGGATTGTCTTCGGCAGTATTTAGCAATCGAGATTTCCGAAAGCAGGGTAAAT
TTAATGTGTCCAGAGTGTCAGGAACGACTACATCCTGTTGATATGAAGTCTATACTTGAC
ACAAATCCTCAGTTGATGCAGAAATGGGAAGAGTTTACGCTGCGACGATTTCTCTCAATT
GATCCTGACTGCAGATGGTGTCCAGCACCTGATTGTGGGTTTGCCGTAATTGCCAGTGGT
TGTGCCAGCTGCCCACGTCTCAAGTGCCAGAGAGATGGCTGCGAAACGGAGTTCTGTTAC
CACTGCCGACAGGAATGGCATCCAGACCAGACCTGTGACGCCGCCCACTTACAAAGAAGA
AAACAACTTCGAATACGAAATAACTCAGTTGCGTACAGCCAAGGTTCCAACTTTCACGAT
GAAATAAAGCCTTGTCCAAAATGTGGAGCGCTCATTGTGAAAATGAATGATGGATCATGT
AACCACATGACTTGCACTGTTTGCGATGCCGAGTTTTGCTGGCTGTGTTTGCAAGAAATA
ACAGATCTACATTATTTAAGTCCATCAGGATGTACTTTCTGGGGTAAAAAACCTTGGAGT
AGAAAGAAAAAAATACTCTGGCAACTGGGCTTGCTTATCGGTGCCCCACTGGGTATTGGT
CTTGTTGCTGGTATCGCCGTCCCTGCCATCATTGTTGGCTTGCCTGTTTGGGTTGCCAGA
AGAATTATGGCCCAGTTTGAAAACAAGGAGAATGTTTCAAAATACAAGAGAAACTTGCTA
GTTGCCACTTGTGTTGCTGGATCTGTCATACTTTCACCGGCTCTTGCCGCTTTAGCTGTT
GGTGTTGGTGTCCCTGTGATGCTGCTCTACGTGTACGGAGTCGTGCCTTTCTCATTATGT
CGTACCGGGAGTTACGGAATTACCTCACGTAATCCGAACGGCAGCAACTCTGCCCTTTCT
ATGCTTCCCATGGGTCTTAGACTTGATCTAGGTGGTACGTCTGGTCAACCAGGTTCCTCC
ACAGCTGAGGATACTGGCAATTTTCACAGTGGCAATGGCTCAATCAACACCCGACTGGGT
CCTATTAACCCAAGTATTGGCGAAGCAAGTGTTGGTGGGATGACGATGGGCAGTTTTAAT
ATGTCGCGCGGCAGTAACATGGATAAGGTGGGAAGAATAGACCCAGATGGCGCCAGTACA
ATCGCTATTGCAGGCACAAGTATTACAGGAAGTTTATCAGGAATCAGTGGAGCAGGAGCC
CTTGGATCAAACAAAGTTGAAGTTCACCACAGTACAAAGGACGTTGATCAACAATCTACA
CATACACAGATATCTGTGGGTTCTGCACCAAATATTACATCTGTACAGGTCCACATGCAT
GACAATGTGTCAGAACACAGCGTCACAAGTGCTCCGATAAATTCTTACGTCCCTCCAGGA
AGCGCCATAAAAAAATCCTATTCTGCAAAATCGCTCGGATCAAAACGGAAAACTAAACCA
ATTAAATCAGATACAGAAACTGTGTTTGCCATCCTAGGTTCATCTGCTTCTGCAAAAGTC
CCAGGTTTAAAGAAGACGAGCATTGATGAGCCACACGGCTTGCCTGTAGTTGACGATATG
TCTCCTCATCACACCAGCGATATTTCCACAGCACCTAAGATGGGCACCGTAGATGAGAAC
GCCTCAGCGTCAATAACCATTACTCCCGAAATGAAGTCATCCCCAAACTCTTCGGAGGAT
GCAACTTGCGATGCGAGCAGCTGCAGCAGTAACAATCCTCTTTTGTCTTCCCCGACCATT
TCAATTGAAACGACATTATCTTCTGATGTGACAGAAGTCATAGTTTAA
| PANTHER |
E3_UB_ligase_RBR (IPR031127) - T[80-536] 1.0E-153 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[92-179] 5.9E-16 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[99-147] 10.542 |
| SMART |
IBR_dom (IPR002867) - T[167-232] 1.0E-22 - T[239-311] 0.009 |
| Pfam |
IBR_dom (IPR002867) - T[167-232] 4.0E-13 - T[259-304] 2.7E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| R144A_HUMAN | 26.022 % | 85.9 | 2.64E-18 |
| RN19A_HUMAN | 53.668 % | 553 | 0 |
| RN19B_HUMAN | 49.808 % | 503 | 3.36E-169 |