- Transcript 'Cisavi.CG.ENS81.R4.4...' >
- Transcript 'Harore.CG.MTP2014.S6...' >
- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S58.g02081.01.t
Possible name(s)
PCDH10; PCDH12; PCDH18
Gene model
Location
S58 [31,056 / 36,646]
Amino acid sequence
Length: 1,054
>Phmamm.CG.MTP2014.S58.g02081.01.p
VEMSEGWQNFASVALLMTAWFITSSIASRAFTQRFHLKENSPTGTIVAELADILDTKITP
KKNFQLLSEKLMTYGTKSTDKRRWMALDETTGTITLQRELNREAICGDLSSCLFQLQIFV
RTDFRMVNLEVEVLDVNEHAPAFPVKYAIVNVSEEAQIGDVISLDRYLARDRDAGNNSII
VYVLSPTNYFSLVQSSDETGSPHLQLKVERSLDYERKPLFDLTLNAEDKGEPRLSSQVPL
QVRVIDANDNSPRFDSEEYPVVLRENLEPGYVITRVQARDPDSGASGTVRYFLATRNPES
VHRIVAVNEVTGEVTLKSELDRESNDKTIIYIEARDLGERVQKLGRTRLVLHVGDVNDNA
PVISISYIAPSDGNIVFVSETSPNPTYFAYVSAKDADFDINGLVDIEIKNVVTVVPTEST
PETTLASQHADALDTFVLNKNGFLGISKMLDREVTERYTITLQACDQGKDQQCSYEQLDV
VVMDENDHAPQFSQSEVNVTIAENASVGSVITTITATDGDNVNLPALKLNEDDETISSTN
GDLSYSLTGGDGSFAIEPRSGSISLVRSIDREQYSQWTITVTATDGGGQKAMCTLNVFVT
DVNDNTPQFTNPVNDDLTIYATIVRDDIITRMQAVDYDLGINGEMKFSLVTVDGIQQTGH
VNTSLFVLNSTNGDLRLNMSSPLLRSSLGPHSIVIQVRDGGKPTRKSERRMTVIITDKLT
LPTMPTVSDKASLFKSDSSFLIIIVALSSALVLLIIVSAAIACKCRKENKKVRTYSCSKA
HEDRRSSVKLIDENATTLPRTTSKESLKGSIAWSQTSNKRQHSQTYDSTTDVTNLSRSDA
VMSHQFTSSGASLNNPSNSRQVDSTCVIKSRPLASSSQLEGDSGHGDSDPDVTSGDISFE
QGFSRQRKPSELSSVDGMYIHNESLGPHCNKQCLELGHSDTCWMPTTTEDNPSNFLEIRT
PASTELSEKSGNLEPIPETQPVRSFWAHVSSQSTMSSIYSSVSPTLYATPNHDTYADPRH
VMLETRFSVRNANARNNSTTDSITTGYVTEPEII
Nucleotide sequence
Length: 3,280
>Phmamm.CG.MTP2014.S58.g02081.01.t
GTTGAAATGAGTGAGGGCTGGCAGAATTTCGCCTCGGTGGCGCTGTTGATGACTGCATGG
TTCATTACGTCATCGATTGCCTCCCGAGCGTTCACTCAAAGGTTTCATTTAAAGGAAAAT
TCGCCGACCGGTACAATTGTCGCGGAGCTCGCTGACATTTTAGACACGAAGATAACGCCA
AAAAAGAACTTTCAGCTATTGAGCGAGAAACTGATGACATACGGAACCAAGTCGACCGAC
AAGCGCAGGTGGATGGCACTCGATGAAACCACGGGGACGATAACTCTACAGCGCGAGCTC
AACCGCGAGGCTATCTGCGGAGACTTGTCGTCTTGTCTTTTTCAACTCCAGATCTTTGTG
CGAACTGACTTCCGTATGGTGAACCTTGAAGTGGAAGTGCTGGACGTCAACGAGCATGCC
CCGGCGTTCCCGGTCAAGTACGCGATTGTCAACGTCAGCGAGGAGGCACAGATCGGTGAC
GTCATCAGCCTTGATCGGTATCTGGCACGTGATCGCGACGCAGGCAACAACTCTATCATC
GTGTATGTGCTGAGCCCCACCAATTATTTTAGCCTTGTTCAGTCAAGCGACGAAACGGGA
AGTCCACATCTGCAGCTCAAAGTCGAACGGTCTCTCGATTACGAACGCAAGCCTCTTTTC
GATCTTACTCTCAACGCTGAAGACAAGGGCGAGCCACGGTTGTCAAGTCAGGTGCCTCTG
CAAGTTAGAGTTATTGATGCAAATGACAACAGTCCAAGATTTGACAGCGAGGAATATCCT
GTGGTGCTGCGAGAGAACCTTGAACCCGGATACGTTATCACCCGCGTTCAGGCAAGAGAC
CCTGATTCCGGTGCTTCGGGAACAGTGAGATATTTTCTCGCCACAAGAAACCCCGAATCT
GTGCATCGAATCGTTGCCGTTAATGAAGTCACCGGAGAGGTGACGCTCAAAAGCGAACTG
GACAGAGAGTCAAACGACAAAACTATAATCTACATCGAAGCCAGGGATTTGGGAGAAAGA
GTACAGAAGCTTGGCCGAACACGACTTGTACTCCATGTTGGGGATGTTAACGACAACGCT
CCAGTTATTAGTATCAGCTACATAGCGCCATCTGATGGAAATATAGTGTTTGTTTCTGAA
ACATCACCCAACCCGACGTATTTTGCGTACGTAAGCGCCAAAGACGCCGATTTTGATATC
AACGGTTTGGTAGACATAGAAATCAAAAACGTTGTAACAGTTGTGCCAACCGAATCGACT
CCCGAAACAACATTGGCAAGCCAACATGCCGATGCCCTGGACACATTCGTACTGAATAAA
AATGGATTTCTAGGCATCAGTAAAATGCTGGACAGGGAGGTCACGGAGAGATACACTATT
ACATTACAAGCCTGTGACCAAGGAAAAGATCAACAATGCTCTTACGAACAGTTGGATGTT
GTTGTGATGGACGAGAACGACCACGCCCCTCAATTTAGCCAATCAGAGGTTAATGTAACC
ATTGCTGAGAATGCATCTGTCGGAAGTGTGATAACAACCATAACAGCTACTGACGGTGAC
AATGTAAATCTTCCAGCACTTAAACTTAACGAGGACGATGAAACGATTTCGTCGACTAAT
GGCGATTTAAGCTACTCGCTCACTGGAGGTGATGGATCGTTCGCAATCGAACCAAGAAGT
GGGAGTATTAGCCTTGTAAGATCAATTGACAGAGAGCAATATTCACAATGGACGATAACT
GTGACGGCTACGGACGGCGGAGGTCAGAAAGCAATGTGCACATTAAACGTGTTCGTGACA
GACGTTAACGACAACACACCCCAATTCACCAACCCAGTGAACGACGACCTGACGATATAC
GCGACTATTGTGCGTGATGACATTATTACACGCATGCAGGCTGTGGATTACGATCTCGGT
ATTAACGGCGAGATGAAGTTTAGTTTGGTGACTGTGGACGGTATTCAACAAACAGGCCAC
GTTAACACCTCACTCTTTGTTCTCAACTCTACAAATGGGGACCTACGCCTAAACATGAGC
AGTCCATTGCTACGCTCAAGTCTCGGCCCACATAGCATCGTCATACAGGTACGTGATGGT
GGAAAGCCAACAAGAAAGAGCGAACGACGAATGACAGTGATCATCACCGATAAACTTACT
CTGCCCACCATGCCAACCGTTTCGGACAAGGCTTCGTTATTCAAATCAGATTCGTCGTTT
CTCATTATAATCGTGGCTCTCTCTTCTGCTCTTGTGCTTCTTATCATTGTTTCTGCAGCC
ATCGCATGCAAATGTAGAAAAGAAAATAAGAAAGTGCGAACGTACAGTTGCAGTAAGGCT
CATGAAGACCGACGTAGCTCAGTAAAACTCATTGATGAAAACGCTACCACCTTGCCTCGT
ACAACATCGAAAGAAAGCCTAAAAGGAAGCATCGCGTGGAGCCAAACATCAAATAAAAGA
CAACATTCCCAAACGTACGATTCGACAACCGACGTTACAAATTTATCCCGCAGTGATGCT
GTCATGTCACATCAGTTTACATCTTCTGGGGCAAGCCTAAATAACCCAAGCAACTCACGA
CAGGTTGACTCTACCTGCGTCATTAAGTCCCGTCCTCTTGCGTCATCATCGCAACTCGAA
GGCGACAGCGGACACGGCGACAGTGATCCTGACGTCACAAGCGGAGACATCTCATTTGAA
CAAGGCTTTTCGCGACAAAGAAAACCGTCTGAATTAAGCTCCGTTGACGGAATGTACATT
CATAACGAAAGTCTCGGACCGCATTGCAACAAACAATGTCTTGAGCTGGGACACAGCGAT
ACCTGCTGGATGCCGACGACTACAGAAGACAACCCAAGCAACTTTCTGGAAATACGCACA
CCCGCCAGCACCGAGTTATCAGAAAAGTCGGGAAATCTTGAACCGATTCCCGAGACTCAA
CCAGTGCGCTCTTTCTGGGCCCACGTTAGTTCACAGTCAACAATGAGTTCGATATACTCC
AGCGTTTCACCGACTCTGTACGCCACCCCCAATCACGATACCTACGCCGACCCGCGTCAC
GTAATGCTCGAGACGCGCTTTTCGGTGAGAAATGCGAACGCACGGAACAACTCAACCACC
GACAGTATTACGACAGGATATGTCACCGAGCCTGAAATCATTTAACTATTATCGCATTAA
AATTATTTGTGTTTTATAGCTCACCTAAACTGTTGTCTTTTGTTTGTTATTTTCGCTTTA
GGTTAAGCAGTATTATTTCTACATATTCCACTACAAGAAA
| Pfam |
Cadherin_N (IPR013164) - T[34-120] 1.4E-7 |
| SMART |
Cadherin (IPR002126) - T[46-141] 0.046 - T[167-252] 5.3E-19 - T[276-361] 7.7E-18 - T[391-490] 2.1E-11 - T[527-607] 4.2E-22 - T[632-723] 4.7E-4 |
| PRINTS |
Cadherin (IPR002126) - T[83-102] 3.8E-28 - T[254-283] 3.8E-28 - T[457-469] 3.8E-28 - T[471-490] 3.8E-28 - T[490-503] 3.8E-28 - T[559-585] 3.8E-28 - T[591-608] 3.8E-28 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[136-246] 5.85E-17 - T[242-367] 5.71E-25 - T[356-484] 7.42E-13 - T[480-612] 1.81E-25 - T[597-718] 7.59E-13 |
| Pfam |
Cadherin (IPR002126) - T[151-244] 3.6E-9 - T[259-343] 7.7E-13 - T[498-599] 3.1E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[242-252] . - T[351-361] . - T[480-490] . - T[597-607] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 26.19 % | 288 | 1.54E-81 |
| PCD12_HUMAN | 28.465 % | 277 | 1.24E-77 |
| PCD10_HUMAN | 27.212 % | 293 | 1.05E-83 |